Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00674

Experiment: PYE with CHIR-090 4 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00673 and CCNA_00674 are separated by 98 nucleotidesCCNA_00674 and CCNA_00675 overlap by 35 nucleotidesCCNA_00675 and CCNA_00676 overlap by 1 nucleotidesCCNA_00676 and CCNA_00677 are separated by 147 nucleotides CCNA_00673: CCNA_00673 - AraC-family transcriptional regulator, at 730,781 to 731,788 _00673 CCNA_00674: CCNA_00674 - NAD(FAD)-utilizing dehydrogenase, at 731,887 to 733,134 _00674 CCNA_00675: CCNA_00675 - VapC-like PIN domain ribonuclease, at 733,100 to 733,495 _00675 CCNA_00676: CCNA_00676 - PSK-family transcription factor, at 733,495 to 733,734 _00676 CCNA_00677: CCNA_00677 - LSU ribosomal protein L1P, at 733,882 to 734,571 _00677 Position (kb) 731 732 733 734Strain fitness (log2 ratio) -1 0 1 2at 730.945 kb on - strand, within CCNA_00673at 730.950 kb on - strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 731.007 kb on + strand, within CCNA_00673at 731.008 kb on - strand, within CCNA_00673at 731.062 kb on - strand, within CCNA_00673at 731.073 kb on + strand, within CCNA_00673at 731.100 kb on + strand, within CCNA_00673at 731.102 kb on - strand, within CCNA_00673at 731.109 kb on + strand, within CCNA_00673at 731.124 kb on - strand, within CCNA_00673at 731.161 kb on + strand, within CCNA_00673at 731.164 kb on - strand, within CCNA_00673at 731.169 kb on - strand, within CCNA_00673at 731.169 kb on - strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.194 kb on - strand, within CCNA_00673at 731.194 kb on - strand, within CCNA_00673at 731.196 kb on - strand, within CCNA_00673at 731.196 kb on - strand, within CCNA_00673at 731.199 kb on + strand, within CCNA_00673at 731.199 kb on + strand, within CCNA_00673at 731.199 kb on + strand, within CCNA_00673at 731.207 kb on - strand, within CCNA_00673at 731.217 kb on - strand, within CCNA_00673at 731.279 kb on - strand, within CCNA_00673at 731.421 kb on - strand, within CCNA_00673at 731.476 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.505 kb on - strand, within CCNA_00673at 731.529 kb on + strand, within CCNA_00673at 731.550 kb on - strand, within CCNA_00673at 731.578 kb on + strand, within CCNA_00673at 731.587 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.624 kb on - strand, within CCNA_00673at 731.627 kb on + strand, within CCNA_00673at 731.635 kb on - strand, within CCNA_00673at 731.662 kb on - strand, within CCNA_00673at 731.689 kb on - strandat 731.712 kb on + strandat 731.750 kb on - strandat 731.750 kb on - strandat 731.754 kb on + strandat 731.762 kb on - strandat 731.884 kb on + strandat 731.907 kb on - strandat 731.911 kb on - strandat 731.972 kb on + strandat 731.977 kb on + strandat 731.980 kb on - strandat 732.003 kb on + strandat 732.029 kb on - strand, within CCNA_00674at 732.034 kb on - strand, within CCNA_00674at 732.153 kb on + strand, within CCNA_00674at 732.153 kb on + strand, within CCNA_00674at 732.153 kb on + strand, within CCNA_00674at 732.161 kb on - strand, within CCNA_00674at 732.180 kb on + strand, within CCNA_00674at 732.180 kb on + strand, within CCNA_00674at 732.188 kb on - strand, within CCNA_00674at 732.209 kb on + strand, within CCNA_00674at 732.209 kb on + strand, within CCNA_00674at 732.264 kb on + strand, within CCNA_00674at 732.297 kb on + strand, within CCNA_00674at 732.305 kb on - strand, within CCNA_00674at 732.330 kb on - strand, within CCNA_00674at 732.335 kb on - strand, within CCNA_00674at 732.337 kb on - strand, within CCNA_00674at 732.363 kb on - strand, within CCNA_00674at 732.370 kb on + strand, within CCNA_00674at 732.422 kb on + strand, within CCNA_00674at 732.467 kb on + strand, within CCNA_00674at 732.622 kb on + strand, within CCNA_00674at 732.630 kb on - strand, within CCNA_00674at 732.684 kb on - strand, within CCNA_00674at 732.693 kb on - strand, within CCNA_00674at 732.750 kb on + strand, within CCNA_00674at 732.808 kb on + strand, within CCNA_00674at 732.808 kb on + strand, within CCNA_00674at 732.816 kb on - strand, within CCNA_00674at 732.822 kb on + strand, within CCNA_00674at 732.832 kb on + strand, within CCNA_00674at 732.832 kb on + strand, within CCNA_00674at 732.841 kb on + strand, within CCNA_00674at 732.841 kb on + strand, within CCNA_00674at 732.849 kb on - strand, within CCNA_00674at 732.849 kb on - strand, within CCNA_00674at 732.849 kb on - strand, within CCNA_00674at 732.849 kb on - strand, within CCNA_00674at 732.849 kb on - strand, within CCNA_00674at 732.849 kb on - strand, within CCNA_00674at 732.851 kb on - strand, within CCNA_00674at 732.859 kb on - strand, within CCNA_00674at 732.859 kb on - strand, within CCNA_00674at 732.906 kb on - strand, within CCNA_00674at 732.937 kb on + strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 733.016 kb on + strandat 733.016 kb on + strandat 733.066 kb on - strandat 733.074 kb on + strandat 733.140 kb on + strand, within CCNA_00675at 733.140 kb on + strand, within CCNA_00675at 733.145 kb on - strand, within CCNA_00675at 733.165 kb on - strand, within CCNA_00675at 733.170 kb on + strand, within CCNA_00675at 733.173 kb on - strand, within CCNA_00675at 733.183 kb on - strand, within CCNA_00675at 733.183 kb on - strand, within CCNA_00675at 733.214 kb on + strand, within CCNA_00675at 733.241 kb on + strand, within CCNA_00675at 733.292 kb on - strand, within CCNA_00675at 733.301 kb on + strand, within CCNA_00675at 733.301 kb on + strand, within CCNA_00675at 733.304 kb on - strand, within CCNA_00675at 733.304 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.326 kb on - strand, within CCNA_00675at 733.443 kb on + strand, within CCNA_00675at 733.451 kb on - strand, within CCNA_00675at 733.557 kb on - strand, within CCNA_00676at 733.585 kb on - strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.615 kb on - strand, within CCNA_00676at 733.615 kb on - strand, within CCNA_00676at 733.615 kb on - strand, within CCNA_00676at 733.627 kb on + strand, within CCNA_00676at 733.777 kb on + strandat 733.788 kb on + strandat 733.820 kb on + strandat 733.893 kb on - strandat 733.915 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
remove
730,945 - CCNA_00673 0.16 -0.6
730,950 - CCNA_00673 0.17 -0.3
730,952 + CCNA_00673 0.17 -1.0
730,952 + CCNA_00673 0.17 -1.0
730,960 - CCNA_00673 0.18 -0.2
730,960 - CCNA_00673 0.18 +0.4
730,960 - CCNA_00673 0.18 +0.3
730,960 - CCNA_00673 0.18 -1.3
730,960 - CCNA_00673 0.18 -0.7
730,960 - CCNA_00673 0.18 +0.5
730,960 - CCNA_00673 0.18 +0.0
730,960 - CCNA_00673 0.18 +1.5
731,007 + CCNA_00673 0.22 -0.2
731,008 - CCNA_00673 0.23 +0.5
731,062 - CCNA_00673 0.28 -1.0
731,073 + CCNA_00673 0.29 -0.1
731,100 + CCNA_00673 0.32 +1.5
731,102 - CCNA_00673 0.32 -0.4
731,109 + CCNA_00673 0.33 -1.6
731,124 - CCNA_00673 0.34 +0.2
731,161 + CCNA_00673 0.38 -0.5
731,164 - CCNA_00673 0.38 -1.0
731,169 - CCNA_00673 0.38 -0.0
731,169 - CCNA_00673 0.38 -0.1
731,188 + CCNA_00673 0.40 -0.2
731,188 + CCNA_00673 0.40 -0.0
731,188 + CCNA_00673 0.40 -0.2
731,194 - CCNA_00673 0.41 -0.8
731,194 - CCNA_00673 0.41 -0.1
731,196 - CCNA_00673 0.41 +0.4
731,196 - CCNA_00673 0.41 +0.3
731,199 + CCNA_00673 0.41 -0.8
731,199 + CCNA_00673 0.41 -0.3
731,199 + CCNA_00673 0.41 -0.7
731,207 - CCNA_00673 0.42 +0.0
731,217 - CCNA_00673 0.43 +0.3
731,279 - CCNA_00673 0.49 -0.7
731,421 - CCNA_00673 0.63 +0.6
731,476 + CCNA_00673 0.69 +0.4
731,497 + CCNA_00673 0.71 -0.9
731,505 - CCNA_00673 0.72 -0.3
731,529 + CCNA_00673 0.74 +0.3
731,550 - CCNA_00673 0.76 +0.0
731,578 + CCNA_00673 0.79 +1.3
731,587 + CCNA_00673 0.80 -0.1
731,596 + CCNA_00673 0.81 +0.7
731,596 + CCNA_00673 0.81 -0.3
731,596 + CCNA_00673 0.81 +0.3
731,596 + CCNA_00673 0.81 +0.1
731,596 + CCNA_00673 0.81 +0.1
731,596 + CCNA_00673 0.81 +0.6
731,604 - CCNA_00673 0.82 +1.2
731,604 - CCNA_00673 0.82 +0.8
731,604 - CCNA_00673 0.82 +0.7
731,604 - CCNA_00673 0.82 +0.1
731,604 - CCNA_00673 0.82 +0.7
731,604 - CCNA_00673 0.82 -0.7
731,604 - CCNA_00673 0.82 -0.1
731,604 - CCNA_00673 0.82 +0.5
731,624 - CCNA_00673 0.84 +0.2
731,627 + CCNA_00673 0.84 -0.3
731,635 - CCNA_00673 0.85 -0.3
731,662 - CCNA_00673 0.87 +0.0
731,689 - +0.9
731,712 + -0.0
731,750 - +0.6
731,750 - +1.0
731,754 + +0.0
731,762 - -0.7
731,884 + -0.0
731,907 - +1.3
731,911 - -0.4
731,972 + -0.1
731,977 + +1.8
731,980 - +0.3
732,003 + +0.2
732,029 - CCNA_00674 0.11 +0.3
732,034 - CCNA_00674 0.12 +0.2
732,153 + CCNA_00674 0.21 +0.0
732,153 + CCNA_00674 0.21 -0.3
732,153 + CCNA_00674 0.21 -0.2
732,161 - CCNA_00674 0.22 -0.0
732,180 + CCNA_00674 0.23 -0.4
732,180 + CCNA_00674 0.23 +0.4
732,188 - CCNA_00674 0.24 +0.3
732,209 + CCNA_00674 0.26 +0.2
732,209 + CCNA_00674 0.26 +0.2
732,264 + CCNA_00674 0.30 +0.1
732,297 + CCNA_00674 0.33 -1.5
732,305 - CCNA_00674 0.33 +0.4
732,330 - CCNA_00674 0.35 +0.2
732,335 - CCNA_00674 0.36 -0.2
732,337 - CCNA_00674 0.36 -0.3
732,363 - CCNA_00674 0.38 -1.3
732,370 + CCNA_00674 0.39 -0.7
732,422 + CCNA_00674 0.43 -0.1
732,467 + CCNA_00674 0.46 +1.2
732,622 + CCNA_00674 0.59 +0.0
732,630 - CCNA_00674 0.60 +0.1
732,684 - CCNA_00674 0.64 +0.7
732,693 - CCNA_00674 0.65 +0.1
732,750 + CCNA_00674 0.69 -1.0
732,808 + CCNA_00674 0.74 +1.7
732,808 + CCNA_00674 0.74 +0.3
732,816 - CCNA_00674 0.74 +0.6
732,822 + CCNA_00674 0.75 -0.3
732,832 + CCNA_00674 0.76 +0.3
732,832 + CCNA_00674 0.76 +0.2
732,841 + CCNA_00674 0.76 -0.0
732,841 + CCNA_00674 0.76 +0.1
732,849 - CCNA_00674 0.77 +0.6
732,849 - CCNA_00674 0.77 +0.3
732,849 - CCNA_00674 0.77 +0.3
732,849 - CCNA_00674 0.77 -0.2
732,849 - CCNA_00674 0.77 +0.0
732,849 - CCNA_00674 0.77 +0.7
732,851 - CCNA_00674 0.77 +0.2
732,859 - CCNA_00674 0.78 +0.3
732,859 - CCNA_00674 0.78 +0.4
732,906 - CCNA_00674 0.82 +1.5
732,937 + CCNA_00674 0.84 -1.0
732,944 - CCNA_00674 0.85 +0.5
733,016 + -1.3
733,016 + -0.0
733,066 - +0.8
733,074 + -0.3
733,140 + CCNA_00675 0.10 +0.8
733,140 + CCNA_00675 0.10 -0.2
733,145 - CCNA_00675 0.11 +0.1
733,165 - CCNA_00675 0.16 +0.6
733,170 + CCNA_00675 0.18 -1.1
733,173 - CCNA_00675 0.18 +1.1
733,183 - CCNA_00675 0.21 +0.4
733,183 - CCNA_00675 0.21 +0.7
733,214 + CCNA_00675 0.29 -1.4
733,241 + CCNA_00675 0.36 -0.1
733,292 - CCNA_00675 0.48 +0.2
733,301 + CCNA_00675 0.51 -1.7
733,301 + CCNA_00675 0.51 -0.6
733,304 - CCNA_00675 0.52 -0.3
733,304 - CCNA_00675 0.52 +1.0
733,309 - CCNA_00675 0.53 +0.0
733,309 - CCNA_00675 0.53 +0.6
733,309 - CCNA_00675 0.53 +0.2
733,326 - CCNA_00675 0.57 +0.4
733,443 + CCNA_00675 0.87 -0.4
733,451 - CCNA_00675 0.89 +0.5
733,557 - CCNA_00676 0.26 +0.4
733,585 - CCNA_00676 0.38 +0.0
733,607 + CCNA_00676 0.47 -1.3
733,607 + CCNA_00676 0.47 -1.1
733,607 + CCNA_00676 0.47 -1.4
733,615 - CCNA_00676 0.50 +0.1
733,615 - CCNA_00676 0.50 -1.3
733,615 - CCNA_00676 0.50 +0.6
733,627 + CCNA_00676 0.55 +0.8
733,777 + +0.1
733,788 + -0.7
733,820 + -0.8
733,893 - -0.4
733,915 - -0.1

Or see this region's nucleotide sequence