Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00670

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00669 and CCNA_00670 overlap by 4 nucleotidesCCNA_00670 and CCNA_00671 are separated by 9 nucleotidesCCNA_00671 and CCNA_00672 are separated by 133 nucleotides CCNA_00669: CCNA_00669 - glycosyltransferase family 99 protein WbsX, at 725,750 to 728,206 _00669 CCNA_00670: CCNA_00670 - ABC-type polysaccharide/polyol phosphate transport system, ATPase component, at 728,203 to 728,955 _00670 CCNA_00671: CCNA_00671 - ABC-type polysaccharide/polyol phosphate export system, permease component, at 728,965 to 729,756 _00671 CCNA_00672: CCNA_00672 - hypothetical protein, at 729,890 to 730,693 _00672 Position (kb) 728 729Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 727.211 kb on - strand, within CCNA_00669at 727.216 kb on - strand, within CCNA_00669at 727.226 kb on - strand, within CCNA_00669at 727.228 kb on + strand, within CCNA_00669at 727.236 kb on - strand, within CCNA_00669at 727.244 kb on - strand, within CCNA_00669at 727.246 kb on + strand, within CCNA_00669at 727.341 kb on + strand, within CCNA_00669at 727.349 kb on - strand, within CCNA_00669at 727.349 kb on - strand, within CCNA_00669at 727.351 kb on + strand, within CCNA_00669at 727.372 kb on - strand, within CCNA_00669at 727.381 kb on + strand, within CCNA_00669at 727.387 kb on + strand, within CCNA_00669at 727.431 kb on + strand, within CCNA_00669at 727.449 kb on + strand, within CCNA_00669at 727.457 kb on - strand, within CCNA_00669at 727.486 kb on - strand, within CCNA_00669at 727.502 kb on - strand, within CCNA_00669at 727.512 kb on + strand, within CCNA_00669at 727.528 kb on + strand, within CCNA_00669at 727.550 kb on - strand, within CCNA_00669at 727.617 kb on - strand, within CCNA_00669at 727.843 kb on - strand, within CCNA_00669at 727.919 kb on + strand, within CCNA_00669at 728.031 kb on - strandat 728.031 kb on - strandat 728.057 kb on - strandat 728.067 kb on + strandat 728.075 kb on - strandat 728.131 kb on - strandat 728.178 kb on + strandat 728.236 kb on + strandat 728.236 kb on + strandat 728.269 kb on + strandat 728.290 kb on + strand, within CCNA_00670at 728.316 kb on + strand, within CCNA_00670at 728.318 kb on - strand, within CCNA_00670at 728.347 kb on - strand, within CCNA_00670at 728.352 kb on + strand, within CCNA_00670at 728.413 kb on - strand, within CCNA_00670at 728.465 kb on - strand, within CCNA_00670at 728.568 kb on - strand, within CCNA_00670at 728.598 kb on + strand, within CCNA_00670at 728.664 kb on - strand, within CCNA_00670at 728.728 kb on - strand, within CCNA_00670at 728.728 kb on - strand, within CCNA_00670at 728.747 kb on - strand, within CCNA_00670at 728.845 kb on - strand, within CCNA_00670at 728.866 kb on + strand, within CCNA_00670at 728.871 kb on + strand, within CCNA_00670at 728.940 kb on - strandat 729.004 kb on - strandat 729.058 kb on + strand, within CCNA_00671at 729.090 kb on - strand, within CCNA_00671at 729.101 kb on + strand, within CCNA_00671at 729.145 kb on - strand, within CCNA_00671at 729.170 kb on + strand, within CCNA_00671at 729.178 kb on - strand, within CCNA_00671at 729.178 kb on - strand, within CCNA_00671at 729.215 kb on - strand, within CCNA_00671at 729.229 kb on - strand, within CCNA_00671at 729.252 kb on + strand, within CCNA_00671at 729.278 kb on + strand, within CCNA_00671at 729.278 kb on - strand, within CCNA_00671at 729.323 kb on - strand, within CCNA_00671at 729.382 kb on - strand, within CCNA_00671at 729.538 kb on - strand, within CCNA_00671at 729.545 kb on - strand, within CCNA_00671at 729.556 kb on - strand, within CCNA_00671at 729.562 kb on - strand, within CCNA_00671at 729.589 kb on + strand, within CCNA_00671at 729.592 kb on - strand, within CCNA_00671at 729.616 kb on - strand, within CCNA_00671at 729.680 kb on - strandat 729.699 kb on - strandat 729.719 kb on + strandat 729.727 kb on + strandat 729.735 kb on - strandat 729.782 kb on + strandat 729.790 kb on - strandat 729.830 kb on + strandat 729.837 kb on - strandat 729.858 kb on - strandat 729.911 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.933 kb on + strandat 729.950 kb on - strandat 729.950 kb on - strandat 729.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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727,211 - CCNA_00669 0.59 +0.6
727,216 - CCNA_00669 0.60 -0.2
727,226 - CCNA_00669 0.60 +0.4
727,228 + CCNA_00669 0.60 +0.7
727,236 - CCNA_00669 0.60 -1.0
727,244 - CCNA_00669 0.61 +0.2
727,246 + CCNA_00669 0.61 +0.6
727,341 + CCNA_00669 0.65 -0.6
727,349 - CCNA_00669 0.65 +0.7
727,349 - CCNA_00669 0.65 -0.4
727,351 + CCNA_00669 0.65 +0.9
727,372 - CCNA_00669 0.66 +1.8
727,381 + CCNA_00669 0.66 +0.0
727,387 + CCNA_00669 0.67 -0.7
727,431 + CCNA_00669 0.68 -0.2
727,449 + CCNA_00669 0.69 +1.1
727,457 - CCNA_00669 0.69 -1.5
727,486 - CCNA_00669 0.71 +1.3
727,502 - CCNA_00669 0.71 -1.1
727,512 + CCNA_00669 0.72 +0.0
727,528 + CCNA_00669 0.72 -0.4
727,550 - CCNA_00669 0.73 -0.8
727,617 - CCNA_00669 0.76 -0.2
727,843 - CCNA_00669 0.85 -0.4
727,919 + CCNA_00669 0.88 +0.3
728,031 - +0.3
728,031 - +1.3
728,057 - +1.6
728,067 + -0.9
728,075 - +0.2
728,131 - +0.9
728,178 + -0.3
728,236 + -1.4
728,236 + -1.4
728,269 + -0.7
728,290 + CCNA_00670 0.12 +0.6
728,316 + CCNA_00670 0.15 +0.0
728,318 - CCNA_00670 0.15 +0.3
728,347 - CCNA_00670 0.19 -0.4
728,352 + CCNA_00670 0.20 +0.6
728,413 - CCNA_00670 0.28 +0.0
728,465 - CCNA_00670 0.35 +0.6
728,568 - CCNA_00670 0.48 +0.4
728,598 + CCNA_00670 0.52 -1.9
728,664 - CCNA_00670 0.61 +0.0
728,728 - CCNA_00670 0.70 -1.0
728,728 - CCNA_00670 0.70 +1.4
728,747 - CCNA_00670 0.72 -1.2
728,845 - CCNA_00670 0.85 -0.7
728,866 + CCNA_00670 0.88 +0.3
728,871 + CCNA_00670 0.89 -1.2
728,940 - -0.2
729,004 - +1.4
729,058 + CCNA_00671 0.12 +0.6
729,090 - CCNA_00671 0.16 +0.6
729,101 + CCNA_00671 0.17 +2.0
729,145 - CCNA_00671 0.23 -2.8
729,170 + CCNA_00671 0.26 +0.0
729,178 - CCNA_00671 0.27 +0.2
729,178 - CCNA_00671 0.27 -0.3
729,215 - CCNA_00671 0.32 +1.3
729,229 - CCNA_00671 0.33 +0.0
729,252 + CCNA_00671 0.36 -0.3
729,278 + CCNA_00671 0.40 +0.6
729,278 - CCNA_00671 0.40 -0.7
729,323 - CCNA_00671 0.45 +0.7
729,382 - CCNA_00671 0.53 +1.0
729,538 - CCNA_00671 0.72 -0.7
729,545 - CCNA_00671 0.73 -0.7
729,556 - CCNA_00671 0.75 -0.2
729,562 - CCNA_00671 0.75 +1.0
729,589 + CCNA_00671 0.79 +0.6
729,592 - CCNA_00671 0.79 +1.0
729,616 - CCNA_00671 0.82 +0.3
729,680 - -0.8
729,699 - -1.0
729,719 + -1.0
729,727 + +0.3
729,735 - -0.2
729,782 + -0.2
729,790 - +0.6
729,830 + -0.6
729,837 - -0.0
729,858 - -0.3
729,911 + +0.7
729,927 + -1.5
729,927 + +1.2
729,927 + +0.8
729,927 + -1.0
729,933 + +1.9
729,950 - -1.4
729,950 - -0.8
729,950 - -0.6

Or see this region's nucleotide sequence