Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00660

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00659 and CCNA_00660 overlap by 4 nucleotidesCCNA_00660 and CCNA_00661 overlap by 4 nucleotidesCCNA_00661 and CCNA_00662 overlap by 17 nucleotidesCCNA_00662 and CCNA_00663 are separated by 43 nucleotides CCNA_00659: CCNA_00659 - type I restriction-modification system restriction subunit, at 714,931 to 717,825 _00659 CCNA_00660: CCNA_00660 - transposase, at 717,822 to 718,802 _00660 CCNA_00661: CCNA_00661 - transposase, HTH-Tnp1 superfamily, at 718,799 to 719,233 _00661 CCNA_00662: CCNA_00662 - hypothetical protein, at 719,217 to 719,564 _00662 CCNA_00663: CCNA_00663 - bacterial apoptosis endonuclease BapE, at 719,608 to 719,943 _00663 Position (kb) 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 716.825 kb on - strand, within CCNA_00659at 716.827 kb on + strand, within CCNA_00659at 716.843 kb on - strand, within CCNA_00659at 716.852 kb on + strand, within CCNA_00659at 716.852 kb on + strand, within CCNA_00659at 716.852 kb on + strand, within CCNA_00659at 716.865 kb on - strand, within CCNA_00659at 716.874 kb on - strand, within CCNA_00659at 716.886 kb on + strand, within CCNA_00659at 716.886 kb on + strand, within CCNA_00659at 716.892 kb on - strand, within CCNA_00659at 716.893 kb on + strand, within CCNA_00659at 716.893 kb on + strand, within CCNA_00659at 716.894 kb on - strand, within CCNA_00659at 716.919 kb on + strand, within CCNA_00659at 716.971 kb on - strand, within CCNA_00659at 717.001 kb on + strand, within CCNA_00659at 717.001 kb on + strand, within CCNA_00659at 717.001 kb on + strand, within CCNA_00659at 717.009 kb on - strand, within CCNA_00659at 717.016 kb on + strand, within CCNA_00659at 717.016 kb on + strand, within CCNA_00659at 717.024 kb on - strand, within CCNA_00659at 717.024 kb on - strand, within CCNA_00659at 717.024 kb on - strand, within CCNA_00659at 717.029 kb on - strand, within CCNA_00659at 717.104 kb on - strand, within CCNA_00659at 717.113 kb on + strand, within CCNA_00659at 717.113 kb on + strand, within CCNA_00659at 717.118 kb on + strand, within CCNA_00659at 717.121 kb on - strand, within CCNA_00659at 717.123 kb on + strand, within CCNA_00659at 717.148 kb on - strand, within CCNA_00659at 717.148 kb on - strand, within CCNA_00659at 717.148 kb on - strand, within CCNA_00659at 717.148 kb on - strand, within CCNA_00659at 717.152 kb on + strand, within CCNA_00659at 717.152 kb on + strand, within CCNA_00659at 717.152 kb on + strand, within CCNA_00659at 717.153 kb on - strand, within CCNA_00659at 717.160 kb on - strand, within CCNA_00659at 717.160 kb on - strand, within CCNA_00659at 717.160 kb on - strand, within CCNA_00659at 717.164 kb on + strand, within CCNA_00659at 717.196 kb on - strand, within CCNA_00659at 717.242 kb on - strand, within CCNA_00659at 717.247 kb on - strand, within CCNA_00659at 717.252 kb on - strand, within CCNA_00659at 717.291 kb on + strand, within CCNA_00659at 717.313 kb on + strand, within CCNA_00659at 717.318 kb on + strand, within CCNA_00659at 717.326 kb on - strand, within CCNA_00659at 717.336 kb on + strand, within CCNA_00659at 717.337 kb on + strand, within CCNA_00659at 717.378 kb on + strand, within CCNA_00659at 717.378 kb on + strand, within CCNA_00659at 717.378 kb on + strand, within CCNA_00659at 717.385 kb on + strand, within CCNA_00659at 717.386 kb on + strand, within CCNA_00659at 717.394 kb on - strand, within CCNA_00659at 717.394 kb on - strand, within CCNA_00659at 717.394 kb on - strand, within CCNA_00659at 717.394 kb on - strand, within CCNA_00659at 717.396 kb on + strand, within CCNA_00659at 717.396 kb on + strand, within CCNA_00659at 717.417 kb on - strand, within CCNA_00659at 717.434 kb on - strand, within CCNA_00659at 717.434 kb on - strand, within CCNA_00659at 717.465 kb on + strand, within CCNA_00659at 717.521 kb on - strand, within CCNA_00659at 717.534 kb on + strand, within CCNA_00659at 717.547 kb on - strandat 717.561 kb on - strandat 717.567 kb on - strandat 717.603 kb on + strandat 717.623 kb on + strandat 717.623 kb on + strandat 717.623 kb on + strandat 717.624 kb on - strandat 717.630 kb on + strandat 717.631 kb on - strandat 717.638 kb on - strandat 717.643 kb on + strandat 717.646 kb on - strandat 717.715 kb on - strandat 717.720 kb on + strandat 717.720 kb on + strandat 717.739 kb on + strandat 719.214 kb on + strandat 719.214 kb on + strandat 719.219 kb on + strandat 719.219 kb on + strandat 719.227 kb on + strandat 719.281 kb on + strand, within CCNA_00662at 719.291 kb on + strand, within CCNA_00662at 719.297 kb on + strand, within CCNA_00662at 719.299 kb on - strand, within CCNA_00662at 719.305 kb on - strand, within CCNA_00662at 719.310 kb on + strand, within CCNA_00662at 719.312 kb on - strand, within CCNA_00662at 719.334 kb on + strand, within CCNA_00662at 719.337 kb on - strand, within CCNA_00662at 719.337 kb on - strand, within CCNA_00662at 719.340 kb on + strand, within CCNA_00662at 719.378 kb on + strand, within CCNA_00662at 719.380 kb on + strand, within CCNA_00662at 719.386 kb on - strand, within CCNA_00662at 719.386 kb on - strand, within CCNA_00662at 719.400 kb on + strand, within CCNA_00662at 719.432 kb on + strand, within CCNA_00662at 719.432 kb on + strand, within CCNA_00662at 719.432 kb on + strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.473 kb on + strand, within CCNA_00662at 719.474 kb on - strand, within CCNA_00662at 719.482 kb on + strand, within CCNA_00662at 719.484 kb on - strand, within CCNA_00662at 719.536 kb on - strandat 719.568 kb on + strandat 719.596 kb on + strandat 719.596 kb on + strandat 719.629 kb on + strandat 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.660 kb on + strand, within CCNA_00663at 719.660 kb on + strand, within CCNA_00663at 719.660 kb on + strand, within CCNA_00663at 719.663 kb on - strand, within CCNA_00663at 719.663 kb on - strand, within CCNA_00663at 719.695 kb on + strand, within CCNA_00663at 719.700 kb on - strand, within CCNA_00663at 719.700 kb on - strand, within CCNA_00663at 719.711 kb on - strand, within CCNA_00663at 719.713 kb on + strand, within CCNA_00663at 719.713 kb on + strand, within CCNA_00663at 719.726 kb on + strand, within CCNA_00663at 719.744 kb on - strand, within CCNA_00663at 719.782 kb on - strand, within CCNA_00663

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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716,825 - CCNA_00659 0.65 -0.9
716,827 + CCNA_00659 0.65 +0.7
716,843 - CCNA_00659 0.66 -0.5
716,852 + CCNA_00659 0.66 -0.3
716,852 + CCNA_00659 0.66 +0.1
716,852 + CCNA_00659 0.66 +1.0
716,865 - CCNA_00659 0.67 -0.5
716,874 - CCNA_00659 0.67 -1.6
716,886 + CCNA_00659 0.68 -1.1
716,886 + CCNA_00659 0.68 -0.5
716,892 - CCNA_00659 0.68 -0.2
716,893 + CCNA_00659 0.68 +0.2
716,893 + CCNA_00659 0.68 +0.2
716,894 - CCNA_00659 0.68 -0.5
716,919 + CCNA_00659 0.69 -0.9
716,971 - CCNA_00659 0.70 -2.8
717,001 + CCNA_00659 0.72 +0.1
717,001 + CCNA_00659 0.72 -0.1
717,001 + CCNA_00659 0.72 +0.4
717,009 - CCNA_00659 0.72 +0.7
717,016 + CCNA_00659 0.72 -0.1
717,016 + CCNA_00659 0.72 +0.2
717,024 - CCNA_00659 0.72 -0.2
717,024 - CCNA_00659 0.72 +0.7
717,024 - CCNA_00659 0.72 +0.4
717,029 - CCNA_00659 0.72 -0.2
717,104 - CCNA_00659 0.75 -0.6
717,113 + CCNA_00659 0.75 -1.4
717,113 + CCNA_00659 0.75 -0.1
717,118 + CCNA_00659 0.76 +0.4
717,121 - CCNA_00659 0.76 -0.1
717,123 + CCNA_00659 0.76 +0.1
717,148 - CCNA_00659 0.77 -1.2
717,148 - CCNA_00659 0.77 +0.6
717,148 - CCNA_00659 0.77 -0.5
717,148 - CCNA_00659 0.77 +0.0
717,152 + CCNA_00659 0.77 +0.2
717,152 + CCNA_00659 0.77 -2.0
717,152 + CCNA_00659 0.77 -1.0
717,153 - CCNA_00659 0.77 +0.1
717,160 - CCNA_00659 0.77 +0.0
717,160 - CCNA_00659 0.77 -0.7
717,160 - CCNA_00659 0.77 -0.9
717,164 + CCNA_00659 0.77 -0.4
717,196 - CCNA_00659 0.78 -0.6
717,242 - CCNA_00659 0.80 +2.2
717,247 - CCNA_00659 0.80 -0.4
717,252 - CCNA_00659 0.80 -0.5
717,291 + CCNA_00659 0.82 -0.7
717,313 + CCNA_00659 0.82 -1.3
717,318 + CCNA_00659 0.82 -0.3
717,326 - CCNA_00659 0.83 -1.3
717,336 + CCNA_00659 0.83 -0.5
717,337 + CCNA_00659 0.83 -0.1
717,378 + CCNA_00659 0.85 +0.8
717,378 + CCNA_00659 0.85 -0.0
717,378 + CCNA_00659 0.85 +1.1
717,385 + CCNA_00659 0.85 -0.6
717,386 + CCNA_00659 0.85 -0.1
717,394 - CCNA_00659 0.85 -1.5
717,394 - CCNA_00659 0.85 +0.4
717,394 - CCNA_00659 0.85 +0.5
717,394 - CCNA_00659 0.85 +0.1
717,396 + CCNA_00659 0.85 +0.2
717,396 + CCNA_00659 0.85 +0.4
717,417 - CCNA_00659 0.86 -0.1
717,434 - CCNA_00659 0.86 -0.5
717,434 - CCNA_00659 0.86 -0.4
717,465 + CCNA_00659 0.88 +0.2
717,521 - CCNA_00659 0.89 +0.7
717,534 + CCNA_00659 0.90 +0.8
717,547 - -0.5
717,561 - +0.0
717,567 - +0.2
717,603 + -0.5
717,623 + +0.2
717,623 + -0.4
717,623 + +0.4
717,624 - +0.6
717,630 + +0.3
717,631 - -0.3
717,638 - +1.0
717,643 + +1.0
717,646 - +0.0
717,715 - -0.1
717,720 + +0.2
717,720 + +0.2
717,739 + -0.7
719,214 + -0.5
719,214 + +0.7
719,219 + -0.3
719,219 + +1.6
719,227 + +1.0
719,281 + CCNA_00662 0.18 -0.2
719,291 + CCNA_00662 0.21 -0.4
719,297 + CCNA_00662 0.23 -0.0
719,299 - CCNA_00662 0.24 +0.7
719,305 - CCNA_00662 0.25 +0.3
719,310 + CCNA_00662 0.27 +0.2
719,312 - CCNA_00662 0.27 +0.0
719,334 + CCNA_00662 0.34 +1.0
719,337 - CCNA_00662 0.34 -0.3
719,337 - CCNA_00662 0.34 -1.1
719,340 + CCNA_00662 0.35 -1.2
719,378 + CCNA_00662 0.46 -0.7
719,380 + CCNA_00662 0.47 +0.7
719,386 - CCNA_00662 0.49 +0.8
719,386 - CCNA_00662 0.49 +0.6
719,400 + CCNA_00662 0.53 -0.2
719,432 + CCNA_00662 0.62 +0.9
719,432 + CCNA_00662 0.62 +0.9
719,432 + CCNA_00662 0.62 +0.6
719,456 - CCNA_00662 0.69 +0.1
719,456 - CCNA_00662 0.69 +0.3
719,456 - CCNA_00662 0.69 -2.5
719,456 - CCNA_00662 0.69 -0.3
719,473 + CCNA_00662 0.74 -0.7
719,474 - CCNA_00662 0.74 -0.1
719,482 + CCNA_00662 0.76 +0.3
719,484 - CCNA_00662 0.77 +0.5
719,536 - -0.1
719,568 + -1.5
719,596 + -1.0
719,596 + +0.7
719,629 + -0.4
719,655 + CCNA_00663 0.14 -1.6
719,655 + CCNA_00663 0.14 -0.4
719,655 + CCNA_00663 0.14 -0.5
719,660 + CCNA_00663 0.15 +0.4
719,660 + CCNA_00663 0.15 -0.5
719,660 + CCNA_00663 0.15 +0.5
719,663 - CCNA_00663 0.16 +0.9
719,663 - CCNA_00663 0.16 -1.0
719,695 + CCNA_00663 0.26 -1.0
719,700 - CCNA_00663 0.27 -0.8
719,700 - CCNA_00663 0.27 -1.7
719,711 - CCNA_00663 0.31 -0.6
719,713 + CCNA_00663 0.31 -0.4
719,713 + CCNA_00663 0.31 -0.2
719,726 + CCNA_00663 0.35 +0.5
719,744 - CCNA_00663 0.40 -1.6
719,782 - CCNA_00663 0.52 +0.1

Or see this region's nucleotide sequence