Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00509

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00507 and CCNA_00508 are separated by 67 nucleotidesCCNA_00508 and CCNA_00509 are separated by 65 nucleotidesCCNA_00509 and CCNA_00510 overlap by 4 nucleotidesCCNA_00510 and CCNA_00511 overlap by 1 nucleotides CCNA_00507: CCNA_00507 - cytochrome c1, at 522,241 to 523,086 _00507 CCNA_00508: CCNA_00508 - aspartate protease, at 523,154 to 523,927 _00508 CCNA_00509: CCNA_00509 - phosphoglycerate mutase family, at 523,993 to 524,526 _00509 CCNA_00510: CCNA_00510 - carboxymethylenebutenolidase, at 524,523 to 525,200 _00510 CCNA_00511: CCNA_00511 - carboxymethylenebutenolidase, at 525,200 to 525,880 _00511 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1 2at 523.037 kb on - strandat 523.206 kb on - strandat 523.250 kb on - strand, within CCNA_00508at 523.252 kb on + strand, within CCNA_00508at 523.410 kb on - strand, within CCNA_00508at 523.412 kb on - strand, within CCNA_00508at 523.513 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.531 kb on - strand, within CCNA_00508at 523.574 kb on - strand, within CCNA_00508at 523.616 kb on + strand, within CCNA_00508at 523.655 kb on - strand, within CCNA_00508at 523.673 kb on - strand, within CCNA_00508at 523.721 kb on - strand, within CCNA_00508at 523.728 kb on + strand, within CCNA_00508at 523.745 kb on + strand, within CCNA_00508at 523.748 kb on - strand, within CCNA_00508at 523.755 kb on - strand, within CCNA_00508at 523.820 kb on + strand, within CCNA_00508at 523.847 kb on + strand, within CCNA_00508at 523.868 kb on + strandat 523.878 kb on + strandat 523.878 kb on + strandat 523.878 kb on + strandat 523.883 kb on + strandat 523.883 kb on + strandat 523.883 kb on + strandat 523.886 kb on - strandat 523.886 kb on - strandat 523.886 kb on - strandat 523.891 kb on - strandat 523.937 kb on - strandat 523.945 kb on + strandat 523.948 kb on - strandat 523.948 kb on - strandat 523.953 kb on - strandat 523.953 kb on - strandat 523.965 kb on + strandat 523.978 kb on - strandat 524.006 kb on - strandat 524.014 kb on + strandat 524.016 kb on - strandat 524.016 kb on - strandat 524.032 kb on + strandat 524.032 kb on - strandat 524.058 kb on + strand, within CCNA_00509at 524.066 kb on - strand, within CCNA_00509at 524.115 kb on - strand, within CCNA_00509at 524.148 kb on + strand, within CCNA_00509at 524.148 kb on + strand, within CCNA_00509at 524.172 kb on + strand, within CCNA_00509at 524.185 kb on + strand, within CCNA_00509at 524.227 kb on + strand, within CCNA_00509at 524.235 kb on - strand, within CCNA_00509at 524.235 kb on - strand, within CCNA_00509at 524.235 kb on - strand, within CCNA_00509at 524.235 kb on - strand, within CCNA_00509at 524.282 kb on + strand, within CCNA_00509at 524.287 kb on + strand, within CCNA_00509at 524.295 kb on - strand, within CCNA_00509at 524.304 kb on - strand, within CCNA_00509at 524.307 kb on - strand, within CCNA_00509at 524.317 kb on - strand, within CCNA_00509at 524.323 kb on + strand, within CCNA_00509at 524.331 kb on - strand, within CCNA_00509at 524.333 kb on + strand, within CCNA_00509at 524.358 kb on - strand, within CCNA_00509at 524.445 kb on - strand, within CCNA_00509at 524.466 kb on - strand, within CCNA_00509at 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.501 kb on - strandat 524.502 kb on - strandat 524.528 kb on + strandat 524.561 kb on + strandat 524.569 kb on - strandat 524.582 kb on - strandat 524.635 kb on + strand, within CCNA_00510at 524.694 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.726 kb on + strand, within CCNA_00510at 524.732 kb on - strand, within CCNA_00510at 524.732 kb on - strand, within CCNA_00510at 524.732 kb on - strand, within CCNA_00510at 524.741 kb on - strand, within CCNA_00510at 524.742 kb on - strand, within CCNA_00510at 524.749 kb on - strand, within CCNA_00510at 524.778 kb on + strand, within CCNA_00510at 524.812 kb on - strand, within CCNA_00510at 524.856 kb on + strand, within CCNA_00510at 524.863 kb on + strand, within CCNA_00510at 524.863 kb on + strand, within CCNA_00510at 524.875 kb on - strand, within CCNA_00510at 524.890 kb on + strand, within CCNA_00510at 524.898 kb on - strand, within CCNA_00510at 524.903 kb on - strand, within CCNA_00510at 524.915 kb on - strand, within CCNA_00510at 524.915 kb on - strand, within CCNA_00510at 524.939 kb on + strand, within CCNA_00510at 524.955 kb on + strand, within CCNA_00510at 524.964 kb on + strand, within CCNA_00510at 524.987 kb on - strand, within CCNA_00510at 525.011 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.033 kb on - strand, within CCNA_00510at 525.035 kb on + strand, within CCNA_00510at 525.040 kb on - strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.055 kb on - strand, within CCNA_00510at 525.065 kb on + strand, within CCNA_00510at 525.072 kb on - strand, within CCNA_00510at 525.096 kb on - strand, within CCNA_00510at 525.148 kb on - strandat 525.153 kb on - strandat 525.210 kb on - strandat 525.219 kb on + strandat 525.236 kb on + strandat 525.242 kb on - strandat 525.330 kb on + strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.437 kb on - strand, within CCNA_00511at 525.509 kb on + strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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523,037 - -1.3
523,206 - +0.0
523,250 - CCNA_00508 0.12 -0.2
523,252 + CCNA_00508 0.13 +0.0
523,410 - CCNA_00508 0.33 +0.5
523,412 - CCNA_00508 0.33 +0.2
523,513 + CCNA_00508 0.46 -0.0
523,518 + CCNA_00508 0.47 -0.8
523,518 + CCNA_00508 0.47 +0.9
523,518 + CCNA_00508 0.47 +1.2
523,518 + CCNA_00508 0.47 -0.0
523,518 + CCNA_00508 0.47 -0.3
523,518 + CCNA_00508 0.47 +0.6
523,518 + CCNA_00508 0.47 -0.1
523,518 + CCNA_00508 0.47 +0.4
523,518 + CCNA_00508 0.47 -0.3
523,518 + CCNA_00508 0.47 -0.2
523,518 + CCNA_00508 0.47 -1.0
523,518 + CCNA_00508 0.47 +0.1
523,518 + CCNA_00508 0.47 +0.3
523,526 - CCNA_00508 0.48 +0.6
523,526 - CCNA_00508 0.48 +0.1
523,526 - CCNA_00508 0.48 +0.5
523,526 - CCNA_00508 0.48 -0.2
523,526 - CCNA_00508 0.48 +0.1
523,526 - CCNA_00508 0.48 +0.2
523,526 - CCNA_00508 0.48 +0.7
523,526 - CCNA_00508 0.48 +0.1
523,526 - CCNA_00508 0.48 +0.3
523,526 - CCNA_00508 0.48 -2.0
523,531 - CCNA_00508 0.49 +0.0
523,574 - CCNA_00508 0.54 +1.3
523,616 + CCNA_00508 0.60 +0.3
523,655 - CCNA_00508 0.65 +0.2
523,673 - CCNA_00508 0.67 -0.2
523,721 - CCNA_00508 0.73 +0.2
523,728 + CCNA_00508 0.74 +0.0
523,745 + CCNA_00508 0.76 +0.3
523,748 - CCNA_00508 0.77 -0.4
523,755 - CCNA_00508 0.78 +0.1
523,820 + CCNA_00508 0.86 -0.5
523,847 + CCNA_00508 0.90 +0.1
523,868 + +1.1
523,878 + +0.4
523,878 + -0.1
523,878 + +0.1
523,883 + +0.8
523,883 + +0.5
523,883 + +0.1
523,886 - -1.1
523,886 - +2.0
523,886 - +0.9
523,891 - +0.4
523,937 - +1.5
523,945 + +0.3
523,948 - -0.1
523,948 - -0.2
523,953 - -0.1
523,953 - -0.3
523,965 + +0.1
523,978 - -0.7
524,006 - +0.6
524,014 + +0.1
524,016 - -0.2
524,016 - +1.0
524,032 + +0.1
524,032 - -1.9
524,058 + CCNA_00509 0.12 +0.1
524,066 - CCNA_00509 0.14 +0.2
524,115 - CCNA_00509 0.23 +0.2
524,148 + CCNA_00509 0.29 -0.6
524,148 + CCNA_00509 0.29 +0.3
524,172 + CCNA_00509 0.34 -0.2
524,185 + CCNA_00509 0.36 +0.0
524,227 + CCNA_00509 0.44 +0.1
524,235 - CCNA_00509 0.45 +0.2
524,235 - CCNA_00509 0.45 -0.1
524,235 - CCNA_00509 0.45 +0.4
524,235 - CCNA_00509 0.45 -1.4
524,282 + CCNA_00509 0.54 -0.6
524,287 + CCNA_00509 0.55 +0.1
524,295 - CCNA_00509 0.57 -0.8
524,304 - CCNA_00509 0.58 +0.3
524,307 - CCNA_00509 0.59 +0.5
524,317 - CCNA_00509 0.61 +0.3
524,323 + CCNA_00509 0.62 +0.1
524,331 - CCNA_00509 0.63 +0.0
524,333 + CCNA_00509 0.64 -0.5
524,358 - CCNA_00509 0.68 -0.5
524,445 - CCNA_00509 0.85 +0.2
524,466 - CCNA_00509 0.89 -0.5
524,494 + -0.2
524,494 + +0.7
524,494 + -0.0
524,494 + +0.9
524,494 + +1.5
524,501 - +0.5
524,502 - -0.1
524,528 + -0.2
524,561 + +0.9
524,569 - +0.6
524,582 - -0.6
524,635 + CCNA_00510 0.17 +0.1
524,694 + CCNA_00510 0.25 -0.1
524,724 + CCNA_00510 0.30 +0.8
524,724 + CCNA_00510 0.30 -0.2
524,724 + CCNA_00510 0.30 -0.4
524,726 + CCNA_00510 0.30 -0.3
524,732 - CCNA_00510 0.31 +0.1
524,732 - CCNA_00510 0.31 +1.4
524,732 - CCNA_00510 0.31 +0.6
524,741 - CCNA_00510 0.32 +0.4
524,742 - CCNA_00510 0.32 -0.0
524,749 - CCNA_00510 0.33 +1.3
524,778 + CCNA_00510 0.38 -0.3
524,812 - CCNA_00510 0.43 -0.1
524,856 + CCNA_00510 0.49 +0.5
524,863 + CCNA_00510 0.50 +0.4
524,863 + CCNA_00510 0.50 -0.4
524,875 - CCNA_00510 0.52 +0.3
524,890 + CCNA_00510 0.54 -0.0
524,898 - CCNA_00510 0.55 -1.1
524,903 - CCNA_00510 0.56 +0.1
524,915 - CCNA_00510 0.58 +0.2
524,915 - CCNA_00510 0.58 +0.7
524,939 + CCNA_00510 0.61 -0.3
524,955 + CCNA_00510 0.64 -0.1
524,964 + CCNA_00510 0.65 +0.6
524,987 - CCNA_00510 0.68 -0.0
525,011 + CCNA_00510 0.72 -0.4
525,032 + CCNA_00510 0.75 +0.4
525,032 + CCNA_00510 0.75 +0.1
525,032 + CCNA_00510 0.75 -0.2
525,033 - CCNA_00510 0.75 +0.2
525,035 + CCNA_00510 0.76 -1.6
525,040 - CCNA_00510 0.76 -0.2
525,042 - CCNA_00510 0.77 -0.5
525,055 - CCNA_00510 0.78 +0.3
525,065 + CCNA_00510 0.80 +0.3
525,072 - CCNA_00510 0.81 +1.8
525,096 - CCNA_00510 0.85 -0.3
525,148 - +0.8
525,153 - +0.3
525,210 - +0.2
525,219 + -0.9
525,236 + -0.4
525,242 - +0.6
525,330 + CCNA_00511 0.19 +1.1
525,365 - CCNA_00511 0.24 +0.5
525,365 - CCNA_00511 0.24 -0.0
525,437 - CCNA_00511 0.35 +0.5
525,509 + CCNA_00511 0.45 +0.7
525,517 - CCNA_00511 0.47 +0.2
525,517 - CCNA_00511 0.47 +0.3

Or see this region's nucleotide sequence