Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00483

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00482 and CCNA_R0007 are separated by 229 nucleotidesCCNA_R0007 and CCNA_00483 are separated by 204 nucleotidesCCNA_00483 and CCNA_00484 are separated by 89 nucleotidesCCNA_00484 and CCNA_00485 are separated by 98 nucleotides CCNA_00482: CCNA_00482 - toxin protein module HipA, at 497,584 to 498,855 _00482 CCNA_R0007: CCNA_R0007 - tRNA-Ser, at 499,085 to 499,174 _R0007 CCNA_00483: CCNA_00483 - Zn-dependent hydrolase, glyoxalase II family, at 499,379 to 500,224 _00483 CCNA_00484: CCNA_00484 - hypothetical protein, at 500,314 to 501,015 _00484 CCNA_00485: CCNA_00485 - ribosomal large subunit pseudouridine synthase D, at 501,114 to 502,142 _00485 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1 2at 498.389 kb on + strand, within CCNA_00482at 498.389 kb on + strand, within CCNA_00482at 498.397 kb on - strand, within CCNA_00482at 498.397 kb on - strand, within CCNA_00482at 498.418 kb on - strand, within CCNA_00482at 498.418 kb on - strand, within CCNA_00482at 498.439 kb on + strand, within CCNA_00482at 498.480 kb on + strand, within CCNA_00482at 498.550 kb on + strand, within CCNA_00482at 498.555 kb on + strand, within CCNA_00482at 498.558 kb on + strand, within CCNA_00482at 498.558 kb on + strand, within CCNA_00482at 498.558 kb on - strand, within CCNA_00482at 498.558 kb on - strand, within CCNA_00482at 498.572 kb on + strand, within CCNA_00482at 498.584 kb on + strand, within CCNA_00482at 498.587 kb on - strand, within CCNA_00482at 498.638 kb on - strand, within CCNA_00482at 498.638 kb on - strand, within CCNA_00482at 498.638 kb on - strand, within CCNA_00482at 498.684 kb on - strand, within CCNA_00482at 498.730 kb on - strandat 498.732 kb on + strandat 498.732 kb on + strandat 498.732 kb on + strandat 498.816 kb on + strandat 498.816 kb on + strandat 498.816 kb on + strandat 498.849 kb on + strandat 498.864 kb on + strandat 498.864 kb on + strandat 498.864 kb on + strandat 498.869 kb on + strandat 498.869 kb on + strandat 498.869 kb on + strandat 498.872 kb on - strandat 498.872 kb on - strandat 498.874 kb on + strandat 498.874 kb on + strandat 498.877 kb on - strandat 498.879 kb on + strandat 498.879 kb on + strandat 498.888 kb on + strandat 498.897 kb on - strandat 498.907 kb on + strandat 498.937 kb on + strandat 498.947 kb on + strandat 498.949 kb on + strandat 498.980 kb on - strandat 499.022 kb on - strandat 499.247 kb on + strandat 499.377 kb on + strandat 499.387 kb on + strandat 499.436 kb on - strandat 499.465 kb on + strand, within CCNA_00483at 499.470 kb on + strand, within CCNA_00483at 499.473 kb on - strand, within CCNA_00483at 499.480 kb on + strand, within CCNA_00483at 499.488 kb on - strand, within CCNA_00483at 499.527 kb on - strand, within CCNA_00483at 499.550 kb on + strand, within CCNA_00483at 499.558 kb on + strand, within CCNA_00483at 499.568 kb on - strand, within CCNA_00483at 499.570 kb on - strand, within CCNA_00483at 499.639 kb on - strand, within CCNA_00483at 499.667 kb on + strand, within CCNA_00483at 499.668 kb on + strand, within CCNA_00483at 499.676 kb on - strand, within CCNA_00483at 499.676 kb on - strand, within CCNA_00483at 499.685 kb on - strand, within CCNA_00483at 499.725 kb on + strand, within CCNA_00483at 499.743 kb on + strand, within CCNA_00483at 499.754 kb on + strand, within CCNA_00483at 499.816 kb on + strand, within CCNA_00483at 499.896 kb on - strand, within CCNA_00483at 499.979 kb on - strand, within CCNA_00483at 499.989 kb on + strand, within CCNA_00483at 499.989 kb on + strand, within CCNA_00483at 500.014 kb on - strand, within CCNA_00483at 500.043 kb on - strand, within CCNA_00483at 500.131 kb on + strand, within CCNA_00483at 500.149 kb on - strandat 500.202 kb on - strandat 500.229 kb on + strandat 500.237 kb on - strandat 500.325 kb on + strandat 500.344 kb on - strandat 500.369 kb on + strandat 500.389 kb on + strand, within CCNA_00484at 500.441 kb on + strand, within CCNA_00484at 500.444 kb on - strand, within CCNA_00484at 500.449 kb on - strand, within CCNA_00484at 500.503 kb on + strand, within CCNA_00484at 500.515 kb on + strand, within CCNA_00484at 500.526 kb on + strand, within CCNA_00484at 500.529 kb on - strand, within CCNA_00484at 500.529 kb on - strand, within CCNA_00484at 500.529 kb on - strand, within CCNA_00484at 500.532 kb on + strand, within CCNA_00484at 500.533 kb on + strand, within CCNA_00484at 500.535 kb on - strand, within CCNA_00484at 500.535 kb on - strand, within CCNA_00484at 500.538 kb on + strand, within CCNA_00484at 500.639 kb on - strand, within CCNA_00484at 500.716 kb on + strand, within CCNA_00484at 500.723 kb on + strand, within CCNA_00484at 500.723 kb on + strand, within CCNA_00484at 500.765 kb on - strand, within CCNA_00484at 500.812 kb on + strand, within CCNA_00484at 500.817 kb on + strand, within CCNA_00484at 500.820 kb on - strand, within CCNA_00484at 500.872 kb on - strand, within CCNA_00484at 500.984 kb on + strandat 500.984 kb on - strandat 500.989 kb on + strandat 501.003 kb on + strandat 501.013 kb on + strandat 501.038 kb on + strandat 501.046 kb on - strandat 501.065 kb on + strandat 501.084 kb on - strandat 501.095 kb on + strandat 501.095 kb on + strandat 501.096 kb on + strandat 501.103 kb on - strandat 501.120 kb on - strandat 501.120 kb on - strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.134 kb on + strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.142 kb on - strandat 501.166 kb on - strandat 501.207 kb on + strandat 501.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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498,389 + CCNA_00482 0.63 -1.4
498,389 + CCNA_00482 0.63 +0.3
498,397 - CCNA_00482 0.64 -0.8
498,397 - CCNA_00482 0.64 +0.0
498,418 - CCNA_00482 0.66 -1.5
498,418 - CCNA_00482 0.66 -1.3
498,439 + CCNA_00482 0.67 -0.1
498,480 + CCNA_00482 0.70 -0.0
498,550 + CCNA_00482 0.76 -0.1
498,555 + CCNA_00482 0.76 +0.0
498,558 + CCNA_00482 0.77 -0.1
498,558 + CCNA_00482 0.77 +0.3
498,558 - CCNA_00482 0.77 +0.6
498,558 - CCNA_00482 0.77 -0.8
498,572 + CCNA_00482 0.78 +0.4
498,584 + CCNA_00482 0.79 +0.2
498,587 - CCNA_00482 0.79 +0.9
498,638 - CCNA_00482 0.83 -0.4
498,638 - CCNA_00482 0.83 -0.2
498,638 - CCNA_00482 0.83 +0.1
498,684 - CCNA_00482 0.86 +0.5
498,730 - +0.6
498,732 + +0.8
498,732 + +0.2
498,732 + -0.7
498,816 + -0.4
498,816 + -1.1
498,816 + -1.3
498,849 + -1.2
498,864 + -1.4
498,864 + +1.0
498,864 + -1.1
498,869 + -1.0
498,869 + -0.9
498,869 + -0.3
498,872 - -0.2
498,872 - +0.7
498,874 + +0.1
498,874 + +0.1
498,877 - +0.4
498,879 + -0.8
498,879 + -2.5
498,888 + -0.9
498,897 - -0.4
498,907 + +1.9
498,937 + -0.5
498,947 + -0.0
498,949 + -1.0
498,980 - +0.3
499,022 - +0.3
499,247 + -2.1
499,377 + +0.1
499,387 + -1.2
499,436 - +0.1
499,465 + CCNA_00483 0.10 -0.1
499,470 + CCNA_00483 0.11 -0.7
499,473 - CCNA_00483 0.11 +0.8
499,480 + CCNA_00483 0.12 -1.0
499,488 - CCNA_00483 0.13 +0.1
499,527 - CCNA_00483 0.17 -0.0
499,550 + CCNA_00483 0.20 +0.3
499,558 + CCNA_00483 0.21 -0.5
499,568 - CCNA_00483 0.22 +0.8
499,570 - CCNA_00483 0.23 +0.5
499,639 - CCNA_00483 0.31 -0.7
499,667 + CCNA_00483 0.34 -0.1
499,668 + CCNA_00483 0.34 -1.4
499,676 - CCNA_00483 0.35 -0.6
499,676 - CCNA_00483 0.35 +0.6
499,685 - CCNA_00483 0.36 +0.2
499,725 + CCNA_00483 0.41 -0.4
499,743 + CCNA_00483 0.43 +0.1
499,754 + CCNA_00483 0.44 -0.2
499,816 + CCNA_00483 0.52 -0.3
499,896 - CCNA_00483 0.61 +0.0
499,979 - CCNA_00483 0.71 +0.2
499,989 + CCNA_00483 0.72 +0.6
499,989 + CCNA_00483 0.72 -2.3
500,014 - CCNA_00483 0.75 -0.3
500,043 - CCNA_00483 0.78 -0.4
500,131 + CCNA_00483 0.89 +0.6
500,149 - -0.1
500,202 - +1.0
500,229 + -1.9
500,237 - +1.4
500,325 + +1.5
500,344 - -0.6
500,369 + -0.6
500,389 + CCNA_00484 0.11 -0.0
500,441 + CCNA_00484 0.18 -2.3
500,444 - CCNA_00484 0.19 -0.0
500,449 - CCNA_00484 0.19 +0.2
500,503 + CCNA_00484 0.27 -1.0
500,515 + CCNA_00484 0.29 +0.1
500,526 + CCNA_00484 0.30 -0.3
500,529 - CCNA_00484 0.31 +0.3
500,529 - CCNA_00484 0.31 +0.5
500,529 - CCNA_00484 0.31 -0.1
500,532 + CCNA_00484 0.31 -0.3
500,533 + CCNA_00484 0.31 +0.5
500,535 - CCNA_00484 0.31 -0.7
500,535 - CCNA_00484 0.31 +0.0
500,538 + CCNA_00484 0.32 +0.5
500,639 - CCNA_00484 0.46 -0.6
500,716 + CCNA_00484 0.57 +0.2
500,723 + CCNA_00484 0.58 -0.2
500,723 + CCNA_00484 0.58 -0.4
500,765 - CCNA_00484 0.64 -0.5
500,812 + CCNA_00484 0.71 -0.1
500,817 + CCNA_00484 0.72 -0.4
500,820 - CCNA_00484 0.72 +0.4
500,872 - CCNA_00484 0.79 +0.2
500,984 + -0.6
500,984 - -0.8
500,989 + -0.2
501,003 + +0.3
501,013 + +0.9
501,038 + -1.1
501,046 - +0.5
501,065 + -0.7
501,084 - +0.3
501,095 + -0.7
501,095 + -0.3
501,096 + -1.0
501,103 - +0.0
501,120 - -0.5
501,120 - -0.3
501,134 + -0.4
501,134 + +0.1
501,134 + -0.9
501,134 + -0.2
501,134 + -0.6
501,142 - -0.9
501,142 - +1.5
501,142 - -0.0
501,142 - -0.0
501,142 - -0.0
501,166 - -1.8
501,207 + -0.1
501,215 - +1.0

Or see this region's nucleotide sequence