Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00382 and CCNA_00383 are separated by 138 nucleotides CCNA_00383 and CCNA_00384 are separated by 86 nucleotides
CCNA_00382: CCNA_00382 - adenine-specific methyltransferase ccrM, at 398,637 to 399,713
_00382
CCNA_00383: CCNA_00383 - ribonuclease HII, at 399,852 to 400,487
_00383
CCNA_00384: CCNA_00384 - glucan endo-1,3-beta-glucosidase, at 400,574 to 401,479
_00384
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.876 kb on - strand at 399.876 kb on - strand at 399.893 kb on - strand at 399.905 kb on + strand at 399.907 kb on + strand at 399.913 kb on - strand at 399.943 kb on - strand, within CCNA_00383 at 399.960 kb on - strand, within CCNA_00383 at 399.966 kb on - strand, within CCNA_00383 at 399.966 kb on - strand, within CCNA_00383 at 399.987 kb on - strand, within CCNA_00383 at 400.006 kb on + strand, within CCNA_00383 at 400.048 kb on + strand, within CCNA_00383 at 400.056 kb on - strand, within CCNA_00383 at 400.098 kb on + strand, within CCNA_00383 at 400.117 kb on + strand, within CCNA_00383 at 400.122 kb on + strand, within CCNA_00383 at 400.127 kb on + strand, within CCNA_00383 at 400.135 kb on - strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.180 kb on + strand, within CCNA_00383 at 400.181 kb on - strand, within CCNA_00383 at 400.187 kb on - strand, within CCNA_00383 at 400.187 kb on - strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.259 kb on - strand, within CCNA_00383 at 400.264 kb on - strand, within CCNA_00383 at 400.282 kb on + strand, within CCNA_00383 at 400.282 kb on + strand, within CCNA_00383 at 400.296 kb on + strand, within CCNA_00383 at 400.296 kb on + strand, within CCNA_00383 at 400.304 kb on - strand, within CCNA_00383 at 400.319 kb on - strand, within CCNA_00383 at 400.319 kb on - strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.353 kb on - strand, within CCNA_00383 at 400.392 kb on - strand, within CCNA_00383 at 400.425 kb on - strand at 400.447 kb on + strand at 400.495 kb on + strand at 400.495 kb on + strand at 400.495 kb on + strand at 400.495 kb on + strand at 400.495 kb on + strand at 400.503 kb on - strand at 400.503 kb on - strand at 400.558 kb on + strand at 400.577 kb on - strand at 400.580 kb on - strand at 400.593 kb on + strand at 400.610 kb on + strand at 400.647 kb on + strand at 400.672 kb on + strand, within CCNA_00384 at 400.683 kb on - strand, within CCNA_00384 at 400.694 kb on - strand, within CCNA_00384 at 400.774 kb on - strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.832 kb on - strand, within CCNA_00384 at 400.835 kb on + strand, within CCNA_00384 at 400.877 kb on + strand, within CCNA_00384 at 400.896 kb on - strand, within CCNA_00384 at 400.896 kb on - strand, within CCNA_00384 at 400.897 kb on - strand, within CCNA_00384 at 400.911 kb on + strand, within CCNA_00384 at 400.942 kb on - strand, within CCNA_00384 at 400.989 kb on - strand, within CCNA_00384 at 400.992 kb on + strand, within CCNA_00384 at 401.033 kb on - strand, within CCNA_00384 at 401.052 kb on - strand, within CCNA_00384 at 401.113 kb on - strand, within CCNA_00384 at 401.113 kb on - strand, within CCNA_00384 at 401.204 kb on - strand, within CCNA_00384 at 401.204 kb on - strand, within CCNA_00384 at 401.205 kb on + strand, within CCNA_00384 at 401.222 kb on + strand, within CCNA_00384 at 401.275 kb on - strand, within CCNA_00384 at 401.285 kb on + strand, within CCNA_00384 at 401.319 kb on + strand, within CCNA_00384 at 401.322 kb on - strand, within CCNA_00384 at 401.389 kb on + strand at 401.422 kb on + strand at 401.435 kb on + strand at 401.435 kb on + strand at 401.435 kb on + strand at 401.439 kb on - strand at 401.445 kb on + strand at 401.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 399,876 - +0.3 399,876 - -0.3 399,893 - -0.0 399,905 + -0.6 399,907 + -0.5 399,913 - +0.4 399,943 - CCNA_00383 0.14 -0.2 399,960 - CCNA_00383 0.17 +0.5 399,966 - CCNA_00383 0.18 -0.2 399,966 - CCNA_00383 0.18 -0.8 399,987 - CCNA_00383 0.21 +0.3 400,006 + CCNA_00383 0.24 -0.7 400,048 + CCNA_00383 0.31 -0.4 400,056 - CCNA_00383 0.32 +0.7 400,098 + CCNA_00383 0.39 -1.1 400,117 + CCNA_00383 0.42 -0.6 400,122 + CCNA_00383 0.42 +0.2 400,127 + CCNA_00383 0.43 +0.2 400,135 - CCNA_00383 0.44 +1.3 400,179 + CCNA_00383 0.51 -0.6 400,179 + CCNA_00383 0.51 +0.2 400,179 + CCNA_00383 0.51 +1.3 400,179 + CCNA_00383 0.51 +0.4 400,179 + CCNA_00383 0.51 -0.2 400,179 + CCNA_00383 0.51 +0.3 400,179 + CCNA_00383 0.51 -0.3 400,180 + CCNA_00383 0.52 -2.1 400,181 - CCNA_00383 0.52 -0.1 400,187 - CCNA_00383 0.53 +0.1 400,187 - CCNA_00383 0.53 -0.1 400,222 + CCNA_00383 0.58 -1.0 400,222 + CCNA_00383 0.58 -1.8 400,222 + CCNA_00383 0.58 -0.1 400,230 - CCNA_00383 0.59 +0.1 400,230 - CCNA_00383 0.59 +1.2 400,259 - CCNA_00383 0.64 +0.8 400,264 - CCNA_00383 0.65 +0.5 400,282 + CCNA_00383 0.68 -0.8 400,282 + CCNA_00383 0.68 -0.7 400,296 + CCNA_00383 0.70 +0.0 400,296 + CCNA_00383 0.70 -1.6 400,304 - CCNA_00383 0.71 +0.6 400,319 - CCNA_00383 0.73 +0.2 400,319 - CCNA_00383 0.73 +0.2 400,338 + CCNA_00383 0.76 -0.8 400,338 + CCNA_00383 0.76 +0.4 400,346 - CCNA_00383 0.78 -0.2 400,346 - CCNA_00383 0.78 +1.3 400,346 - CCNA_00383 0.78 -0.7 400,353 - CCNA_00383 0.79 +0.2 400,392 - CCNA_00383 0.85 -0.2 400,425 - -0.2 400,447 + -1.6 400,495 + -0.8 400,495 + +1.6 400,495 + +0.0 400,495 + -0.2 400,495 + -0.3 400,503 - -0.8 400,503 - +0.2 400,558 + -0.1 400,577 - +0.2 400,580 - +0.3 400,593 + -0.2 400,610 + -0.2 400,647 + +0.4 400,672 + CCNA_00384 0.11 -0.0 400,683 - CCNA_00384 0.12 +1.1 400,694 - CCNA_00384 0.13 +0.4 400,774 - CCNA_00384 0.22 +1.4 400,781 + CCNA_00384 0.23 -0.1 400,781 + CCNA_00384 0.23 +0.1 400,781 + CCNA_00384 0.23 -0.6 400,789 - CCNA_00384 0.24 +0.7 400,789 - CCNA_00384 0.24 +0.2 400,832 - CCNA_00384 0.28 +0.2 400,835 + CCNA_00384 0.29 -0.0 400,877 + CCNA_00384 0.33 -0.4 400,896 - CCNA_00384 0.36 -0.1 400,896 - CCNA_00384 0.36 -0.3 400,897 - CCNA_00384 0.36 -0.9 400,911 + CCNA_00384 0.37 -0.6 400,942 - CCNA_00384 0.41 -0.9 400,989 - CCNA_00384 0.46 -1.0 400,992 + CCNA_00384 0.46 +0.3 401,033 - CCNA_00384 0.51 -1.5 401,052 - CCNA_00384 0.53 -0.0 401,113 - CCNA_00384 0.59 -0.4 401,113 - CCNA_00384 0.59 -0.4 401,204 - CCNA_00384 0.70 +0.1 401,204 - CCNA_00384 0.70 -1.2 401,205 + CCNA_00384 0.70 +0.0 401,222 + CCNA_00384 0.72 +0.3 401,275 - CCNA_00384 0.77 -1.5 401,285 + CCNA_00384 0.78 +0.3 401,319 + CCNA_00384 0.82 -0.3 401,322 - CCNA_00384 0.83 -0.3 401,389 + +0.7 401,422 + -0.6 401,435 + -0.2 401,435 + +1.3 401,435 + -2.1 401,439 - +0.3 401,445 + +0.1 401,447 + +1.8
Or see this region's nucleotide sequence