Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00349

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00348 and CCNA_00349 are separated by 173 nucleotidesCCNA_00349 and CCNA_00350 overlap by 4 nucleotidesCCNA_00350 and CCNA_00351 are separated by 125 nucleotides CCNA_00348: CCNA_00348 - methyl-accepting chemotaxis protein, at 362,218 to 364,221 _00348 CCNA_00349: CCNA_00349 - integrase/recombinase, XerC-CodV family, at 364,395 to 365,309 _00349 CCNA_00350: CCNA_00350 - hypothetical protein, at 365,306 to 365,986 _00350 CCNA_00351: CCNA_00351 - primosomal protein N', at 366,112 to 368,271 _00351 Position (kb) 364 365 366Strain fitness (log2 ratio) -1 0 1at 363.431 kb on + strand, within CCNA_00348at 363.441 kb on - strand, within CCNA_00348at 363.446 kb on - strand, within CCNA_00348at 363.454 kb on - strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.470 kb on + strand, within CCNA_00348at 363.482 kb on + strand, within CCNA_00348at 363.482 kb on + strand, within CCNA_00348at 363.501 kb on + strand, within CCNA_00348at 363.502 kb on - strand, within CCNA_00348at 363.520 kb on + strand, within CCNA_00348at 363.520 kb on + strand, within CCNA_00348at 363.527 kb on + strand, within CCNA_00348at 363.547 kb on + strand, within CCNA_00348at 363.553 kb on + strand, within CCNA_00348at 363.556 kb on - strand, within CCNA_00348at 363.556 kb on - strand, within CCNA_00348at 363.606 kb on - strand, within CCNA_00348at 363.613 kb on + strand, within CCNA_00348at 363.613 kb on + strand, within CCNA_00348at 363.621 kb on - strand, within CCNA_00348at 363.621 kb on - strand, within CCNA_00348at 363.663 kb on - strand, within CCNA_00348at 363.699 kb on - strand, within CCNA_00348at 363.701 kb on + strand, within CCNA_00348at 363.709 kb on - strand, within CCNA_00348at 363.725 kb on + strand, within CCNA_00348at 363.733 kb on - strand, within CCNA_00348at 363.746 kb on + strand, within CCNA_00348at 363.779 kb on + strand, within CCNA_00348at 363.804 kb on - strand, within CCNA_00348at 363.822 kb on + strand, within CCNA_00348at 363.824 kb on - strand, within CCNA_00348at 363.835 kb on - strand, within CCNA_00348at 363.844 kb on + strand, within CCNA_00348at 363.844 kb on + strand, within CCNA_00348at 363.845 kb on + strand, within CCNA_00348at 363.852 kb on - strand, within CCNA_00348at 363.852 kb on - strand, within CCNA_00348at 363.852 kb on - strand, within CCNA_00348at 363.853 kb on - strand, within CCNA_00348at 363.853 kb on - strand, within CCNA_00348at 363.853 kb on - strand, within CCNA_00348at 363.856 kb on + strand, within CCNA_00348at 363.858 kb on - strand, within CCNA_00348at 363.908 kb on - strand, within CCNA_00348at 363.940 kb on + strand, within CCNA_00348at 363.957 kb on + strand, within CCNA_00348at 363.957 kb on + strand, within CCNA_00348at 363.960 kb on - strand, within CCNA_00348at 363.965 kb on - strand, within CCNA_00348at 363.965 kb on - strand, within CCNA_00348at 363.970 kb on - strand, within CCNA_00348at 363.971 kb on + strand, within CCNA_00348at 363.979 kb on - strand, within CCNA_00348at 363.989 kb on - strand, within CCNA_00348at 363.991 kb on + strand, within CCNA_00348at 364.032 kb on - strandat 364.095 kb on - strandat 364.100 kb on - strandat 364.170 kb on - strandat 364.339 kb on + strandat 364.392 kb on + strandat 364.395 kb on - strandat 364.399 kb on + strandat 364.399 kb on + strandat 364.406 kb on + strandat 364.406 kb on + strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.461 kb on - strandat 364.571 kb on + strand, within CCNA_00349at 364.654 kb on + strand, within CCNA_00349at 364.971 kb on - strand, within CCNA_00349at 365.208 kb on + strand, within CCNA_00349at 365.208 kb on + strand, within CCNA_00349at 365.295 kb on - strandat 365.991 kb on + strandat 365.999 kb on - strandat 366.006 kb on + strandat 366.009 kb on - strandat 366.014 kb on - strandat 366.045 kb on - strandat 366.071 kb on + strandat 366.080 kb on - strandat 366.102 kb on + strandat 366.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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363,431 + CCNA_00348 0.61 -0.3
363,441 - CCNA_00348 0.61 +0.3
363,446 - CCNA_00348 0.61 +1.2
363,454 - CCNA_00348 0.62 +0.1
363,460 + CCNA_00348 0.62 -0.0
363,460 + CCNA_00348 0.62 -0.5
363,470 + CCNA_00348 0.62 -0.4
363,482 + CCNA_00348 0.63 +0.7
363,482 + CCNA_00348 0.63 -0.1
363,501 + CCNA_00348 0.64 +0.3
363,502 - CCNA_00348 0.64 -0.8
363,520 + CCNA_00348 0.65 +0.4
363,520 + CCNA_00348 0.65 -0.4
363,527 + CCNA_00348 0.65 +0.4
363,547 + CCNA_00348 0.66 -0.0
363,553 + CCNA_00348 0.67 -0.8
363,556 - CCNA_00348 0.67 +0.4
363,556 - CCNA_00348 0.67 -0.2
363,606 - CCNA_00348 0.69 +0.1
363,613 + CCNA_00348 0.70 +0.7
363,613 + CCNA_00348 0.70 +0.5
363,621 - CCNA_00348 0.70 +0.3
363,621 - CCNA_00348 0.70 -0.1
363,663 - CCNA_00348 0.72 -0.1
363,699 - CCNA_00348 0.74 -0.2
363,701 + CCNA_00348 0.74 -1.0
363,709 - CCNA_00348 0.74 -1.1
363,725 + CCNA_00348 0.75 -0.3
363,733 - CCNA_00348 0.76 +0.1
363,746 + CCNA_00348 0.76 -0.3
363,779 + CCNA_00348 0.78 -0.6
363,804 - CCNA_00348 0.79 +0.2
363,822 + CCNA_00348 0.80 -0.2
363,824 - CCNA_00348 0.80 +0.8
363,835 - CCNA_00348 0.81 +0.3
363,844 + CCNA_00348 0.81 +1.0
363,844 + CCNA_00348 0.81 +1.0
363,845 + CCNA_00348 0.81 +0.8
363,852 - CCNA_00348 0.82 -0.3
363,852 - CCNA_00348 0.82 -0.1
363,852 - CCNA_00348 0.82 +0.7
363,853 - CCNA_00348 0.82 -0.4
363,853 - CCNA_00348 0.82 +1.1
363,853 - CCNA_00348 0.82 +0.1
363,856 + CCNA_00348 0.82 -1.0
363,858 - CCNA_00348 0.82 +0.7
363,908 - CCNA_00348 0.84 -0.0
363,940 + CCNA_00348 0.86 -1.1
363,957 + CCNA_00348 0.87 -0.4
363,957 + CCNA_00348 0.87 -0.3
363,960 - CCNA_00348 0.87 -0.3
363,965 - CCNA_00348 0.87 +0.1
363,965 - CCNA_00348 0.87 +0.1
363,970 - CCNA_00348 0.87 -0.3
363,971 + CCNA_00348 0.87 +0.8
363,979 - CCNA_00348 0.88 -0.6
363,989 - CCNA_00348 0.88 +0.6
363,991 + CCNA_00348 0.88 -0.2
364,032 - +0.3
364,095 - -0.1
364,100 - +0.0
364,170 - +0.8
364,339 + +0.3
364,392 + -0.3
364,395 - +0.5
364,399 + -0.8
364,399 + +0.3
364,406 + +0.0
364,406 + +0.2
364,407 - +0.1
364,407 - -0.7
364,407 - +0.4
364,407 - -0.0
364,407 - -0.2
364,461 - -0.2
364,571 + CCNA_00349 0.19 +0.4
364,654 + CCNA_00349 0.28 -0.7
364,971 - CCNA_00349 0.63 -0.8
365,208 + CCNA_00349 0.89 +0.1
365,208 + CCNA_00349 0.89 -0.4
365,295 - -0.1
365,991 + +0.6
365,999 - -1.6
366,006 + +0.1
366,009 - +0.6
366,014 - -0.1
366,045 - -1.3
366,071 + -0.1
366,080 - -0.5
366,102 + -0.2
366,111 - +0.4

Or see this region's nucleotide sequence