Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00315

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00313 and CCNA_00314 are separated by 42 nucleotidesCCNA_00314 and CCNA_00315 are separated by 25 nucleotidesCCNA_00315 and CCNA_00316 are separated by 23 nucleotides CCNA_00313: CCNA_00313 - peptidase, M14 family, at 326,715 to 328,544 _00313 CCNA_00314: CCNA_00314 - hypothetical protein, at 328,587 to 329,198 _00314 CCNA_00315: CCNA_00315 - 3-polyprenyl-4-hydroxybenzoate decarboxylase, at 329,224 to 330,753 _00315 CCNA_00316: CCNA_00316 - glutamate 5-kinase, at 330,777 to 331,910 _00316 Position (kb) 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 328.256 kb on - strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.293 kb on + strand, within CCNA_00313at 328.294 kb on + strand, within CCNA_00313at 328.302 kb on - strand, within CCNA_00313at 328.330 kb on + strand, within CCNA_00313at 328.363 kb on + strandat 328.371 kb on - strandat 328.371 kb on - strandat 328.371 kb on - strandat 328.379 kb on + strandat 328.387 kb on - strandat 328.414 kb on - strandat 328.414 kb on - strandat 328.422 kb on + strandat 328.465 kb on + strandat 328.465 kb on + strandat 328.465 kb on + strandat 328.465 kb on + strandat 328.473 kb on - strandat 328.479 kb on + strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.488 kb on - strandat 328.537 kb on - strandat 328.542 kb on - strandat 328.547 kb on + strandat 328.568 kb on + strandat 328.615 kb on + strandat 328.615 kb on + strandat 328.651 kb on - strand, within CCNA_00314at 328.653 kb on + strand, within CCNA_00314at 328.653 kb on + strand, within CCNA_00314at 328.663 kb on + strand, within CCNA_00314at 328.725 kb on + strand, within CCNA_00314at 328.740 kb on - strand, within CCNA_00314at 328.742 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.761 kb on - strand, within CCNA_00314at 328.761 kb on - strand, within CCNA_00314at 328.865 kb on + strand, within CCNA_00314at 328.926 kb on + strand, within CCNA_00314at 328.934 kb on - strand, within CCNA_00314at 328.934 kb on - strand, within CCNA_00314at 328.961 kb on + strand, within CCNA_00314at 328.969 kb on - strand, within CCNA_00314at 328.969 kb on - strand, within CCNA_00314at 328.976 kb on - strand, within CCNA_00314at 328.992 kb on - strand, within CCNA_00314at 328.997 kb on - strand, within CCNA_00314at 328.997 kb on - strand, within CCNA_00314at 329.002 kb on + strand, within CCNA_00314at 329.010 kb on - strand, within CCNA_00314at 329.085 kb on + strand, within CCNA_00314at 329.086 kb on + strand, within CCNA_00314at 329.094 kb on - strand, within CCNA_00314at 329.104 kb on - strand, within CCNA_00314at 329.112 kb on - strand, within CCNA_00314at 329.114 kb on - strand, within CCNA_00314at 329.159 kb on - strandat 329.198 kb on + strandat 329.280 kb on - strandat 329.361 kb on + strandat 329.420 kb on + strand, within CCNA_00315at 329.426 kb on - strand, within CCNA_00315at 329.433 kb on - strand, within CCNA_00315at 329.482 kb on + strand, within CCNA_00315at 329.544 kb on - strand, within CCNA_00315at 329.577 kb on + strand, within CCNA_00315at 329.585 kb on - strand, within CCNA_00315at 329.600 kb on + strand, within CCNA_00315at 329.607 kb on - strand, within CCNA_00315at 329.608 kb on - strand, within CCNA_00315at 329.657 kb on + strand, within CCNA_00315at 329.824 kb on - strand, within CCNA_00315at 329.945 kb on + strand, within CCNA_00315at 330.081 kb on - strand, within CCNA_00315at 330.126 kb on - strand, within CCNA_00315at 330.126 kb on - strand, within CCNA_00315at 330.146 kb on - strand, within CCNA_00315at 330.251 kb on + strand, within CCNA_00315at 330.273 kb on + strand, within CCNA_00315at 330.286 kb on + strand, within CCNA_00315at 330.462 kb on - strand, within CCNA_00315at 330.664 kb on - strandat 330.704 kb on + strandat 330.704 kb on + strandat 330.756 kb on - strandat 330.774 kb on + strandat 330.774 kb on + strandat 330.775 kb on + strandat 330.782 kb on - strandat 330.853 kb on + strandat 330.853 kb on + strandat 330.853 kb on + strandat 330.888 kb on + strandat 330.888 kb on + strandat 330.896 kb on - strand, within CCNA_00316at 330.896 kb on - strand, within CCNA_00316at 330.896 kb on - strand, within CCNA_00316at 330.896 kb on - strand, within CCNA_00316at 330.914 kb on + strand, within CCNA_00316at 330.946 kb on + strand, within CCNA_00316at 330.946 kb on + strand, within CCNA_00316at 330.954 kb on - strand, within CCNA_00316at 330.965 kb on - strand, within CCNA_00316at 331.014 kb on - strand, within CCNA_00316at 331.050 kb on + strand, within CCNA_00316at 331.053 kb on - strand, within CCNA_00316at 331.075 kb on + strand, within CCNA_00316at 331.177 kb on - strand, within CCNA_00316at 331.177 kb on - strand, within CCNA_00316at 331.326 kb on - strand, within CCNA_00316at 331.338 kb on - strand, within CCNA_00316at 331.338 kb on - strand, within CCNA_00316at 331.349 kb on + strand, within CCNA_00316at 331.354 kb on + strand, within CCNA_00316at 331.357 kb on - strand, within CCNA_00316at 331.362 kb on - strand, within CCNA_00316at 331.362 kb on - strand, within CCNA_00316at 331.365 kb on - strand, within CCNA_00316at 331.394 kb on + strand, within CCNA_00316at 331.394 kb on + strand, within CCNA_00316at 331.410 kb on - strand, within CCNA_00316at 331.452 kb on + strand, within CCNA_00316at 331.466 kb on + strand, within CCNA_00316at 331.580 kb on - strand, within CCNA_00316at 331.580 kb on - strand, within CCNA_00316at 331.589 kb on - strand, within CCNA_00316at 331.594 kb on - strand, within CCNA_00316at 331.600 kb on - strand, within CCNA_00316at 331.615 kb on - strand, within CCNA_00316at 331.615 kb on - strand, within CCNA_00316at 331.621 kb on + strand, within CCNA_00316at 331.640 kb on - strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.687 kb on - strand, within CCNA_00316at 331.708 kb on - strand, within CCNA_00316at 331.724 kb on - strand, within CCNA_00316

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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328,256 - CCNA_00313 0.84 +0.7
328,281 + CCNA_00313 0.86 -0.6
328,281 + CCNA_00313 0.86 -1.7
328,281 + CCNA_00313 0.86 +0.2
328,281 + CCNA_00313 0.86 -0.2
328,281 + CCNA_00313 0.86 -0.4
328,289 - CCNA_00313 0.86 -0.0
328,289 - CCNA_00313 0.86 -0.4
328,289 - CCNA_00313 0.86 -0.3
328,289 - CCNA_00313 0.86 +0.1
328,289 - CCNA_00313 0.86 +0.1
328,289 - CCNA_00313 0.86 -0.4
328,293 + CCNA_00313 0.86 -0.2
328,294 + CCNA_00313 0.86 -0.6
328,302 - CCNA_00313 0.87 -0.0
328,330 + CCNA_00313 0.88 +0.5
328,363 + +0.1
328,371 - -0.1
328,371 - -0.5
328,371 - -0.3
328,379 + -0.3
328,387 - +0.5
328,414 - -0.1
328,414 - +0.0
328,422 + -1.1
328,465 + -0.2
328,465 + -0.2
328,465 + -0.9
328,465 + -0.1
328,473 - -0.5
328,479 + +0.3
328,487 - -0.1
328,487 - +0.2
328,487 - -0.3
328,487 - -1.3
328,488 - +0.0
328,537 - +0.1
328,542 - +0.0
328,547 + -1.4
328,568 + -0.8
328,615 + -1.2
328,615 + -0.5
328,651 - CCNA_00314 0.10 -1.1
328,653 + CCNA_00314 0.11 +1.0
328,653 + CCNA_00314 0.11 -1.6
328,663 + CCNA_00314 0.12 +0.2
328,725 + CCNA_00314 0.23 -2.3
328,740 - CCNA_00314 0.25 +0.5
328,742 + CCNA_00314 0.25 -0.1
328,753 + CCNA_00314 0.27 -1.0
328,753 + CCNA_00314 0.27 +0.1
328,761 - CCNA_00314 0.28 +0.9
328,761 - CCNA_00314 0.28 +0.6
328,865 + CCNA_00314 0.45 +2.4
328,926 + CCNA_00314 0.55 +0.0
328,934 - CCNA_00314 0.57 +0.3
328,934 - CCNA_00314 0.57 -0.1
328,961 + CCNA_00314 0.61 -0.0
328,969 - CCNA_00314 0.62 +0.2
328,969 - CCNA_00314 0.62 -0.2
328,976 - CCNA_00314 0.64 +0.0
328,992 - CCNA_00314 0.66 +0.2
328,997 - CCNA_00314 0.67 -0.1
328,997 - CCNA_00314 0.67 +0.4
329,002 + CCNA_00314 0.68 +1.4
329,010 - CCNA_00314 0.69 -0.2
329,085 + CCNA_00314 0.81 +0.4
329,086 + CCNA_00314 0.82 -0.3
329,094 - CCNA_00314 0.83 +0.4
329,104 - CCNA_00314 0.84 -0.2
329,112 - CCNA_00314 0.86 +0.4
329,114 - CCNA_00314 0.86 +0.5
329,159 - -0.1
329,198 + -0.8
329,280 - -0.9
329,361 + +2.0
329,420 + CCNA_00315 0.13 -0.1
329,426 - CCNA_00315 0.13 +0.4
329,433 - CCNA_00315 0.14 +0.1
329,482 + CCNA_00315 0.17 -0.3
329,544 - CCNA_00315 0.21 -0.3
329,577 + CCNA_00315 0.23 -1.1
329,585 - CCNA_00315 0.24 -0.2
329,600 + CCNA_00315 0.25 +0.6
329,607 - CCNA_00315 0.25 +0.5
329,608 - CCNA_00315 0.25 +1.4
329,657 + CCNA_00315 0.28 -1.2
329,824 - CCNA_00315 0.39 -2.3
329,945 + CCNA_00315 0.47 +0.8
330,081 - CCNA_00315 0.56 -1.5
330,126 - CCNA_00315 0.59 -1.2
330,126 - CCNA_00315 0.59 -0.4
330,146 - CCNA_00315 0.60 -0.7
330,251 + CCNA_00315 0.67 -0.3
330,273 + CCNA_00315 0.69 -0.5
330,286 + CCNA_00315 0.69 -0.3
330,462 - CCNA_00315 0.81 -0.7
330,664 - -1.2
330,704 + -1.3
330,704 + +1.0
330,756 - -0.3
330,774 + -0.1
330,774 + +0.3
330,775 + +0.7
330,782 - +0.2
330,853 + -0.2
330,853 + -0.3
330,853 + +0.3
330,888 + -0.4
330,888 + -0.1
330,896 - CCNA_00316 0.10 -0.2
330,896 - CCNA_00316 0.10 +0.3
330,896 - CCNA_00316 0.10 -1.0
330,896 - CCNA_00316 0.10 +0.5
330,914 + CCNA_00316 0.12 +0.2
330,946 + CCNA_00316 0.15 -0.9
330,946 + CCNA_00316 0.15 -0.0
330,954 - CCNA_00316 0.16 +0.2
330,965 - CCNA_00316 0.17 +0.2
331,014 - CCNA_00316 0.21 +0.2
331,050 + CCNA_00316 0.24 +0.1
331,053 - CCNA_00316 0.24 -0.3
331,075 + CCNA_00316 0.26 +0.1
331,177 - CCNA_00316 0.35 +0.8
331,177 - CCNA_00316 0.35 -0.1
331,326 - CCNA_00316 0.48 +1.4
331,338 - CCNA_00316 0.49 +0.9
331,338 - CCNA_00316 0.49 -1.2
331,349 + CCNA_00316 0.50 -0.3
331,354 + CCNA_00316 0.51 +0.5
331,357 - CCNA_00316 0.51 -0.2
331,362 - CCNA_00316 0.52 -0.0
331,362 - CCNA_00316 0.52 +0.4
331,365 - CCNA_00316 0.52 -0.0
331,394 + CCNA_00316 0.54 +0.6
331,394 + CCNA_00316 0.54 +0.1
331,410 - CCNA_00316 0.56 +0.2
331,452 + CCNA_00316 0.60 +0.9
331,466 + CCNA_00316 0.61 -0.6
331,580 - CCNA_00316 0.71 +0.6
331,580 - CCNA_00316 0.71 +0.2
331,589 - CCNA_00316 0.72 +0.2
331,594 - CCNA_00316 0.72 +0.0
331,600 - CCNA_00316 0.73 +0.2
331,615 - CCNA_00316 0.74 -0.3
331,615 - CCNA_00316 0.74 +0.3
331,621 + CCNA_00316 0.74 +0.2
331,640 - CCNA_00316 0.76 -0.5
331,641 + CCNA_00316 0.76 +0.3
331,641 + CCNA_00316 0.76 -3.4
331,641 + CCNA_00316 0.76 -0.3
331,641 + CCNA_00316 0.76 -0.5
331,641 + CCNA_00316 0.76 +0.7
331,641 + CCNA_00316 0.76 +1.2
331,641 + CCNA_00316 0.76 -0.3
331,649 - CCNA_00316 0.77 +0.1
331,649 - CCNA_00316 0.77 +0.1
331,649 - CCNA_00316 0.77 +0.2
331,687 - CCNA_00316 0.80 -0.2
331,708 - CCNA_00316 0.82 -0.2
331,724 - CCNA_00316 0.84 +1.3

Or see this region's nucleotide sequence