Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00198

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00196 and CCNA_00197 are separated by 589 nucleotidesCCNA_00197 and CCNA_00198 overlap by 4 nucleotidesCCNA_00198 and CCNA_00199 are separated by 130 nucleotides CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531 _00196 CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522 _00197 CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256 _00198 CCNA_00199: CCNA_00199 - TadG/vWA-family protein, at 212,387 to 214,267 _00199 Position (kb) 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 210.640 kb on - strandat 210.662 kb on - strandat 210.709 kb on + strandat 210.717 kb on - strandat 210.717 kb on - strandat 210.748 kb on - strandat 210.838 kb on + strandat 210.849 kb on + strandat 210.854 kb on + strandat 210.859 kb on + strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.912 kb on + strandat 210.912 kb on + strandat 210.913 kb on + strandat 210.973 kb on + strandat 210.981 kb on - strandat 211.001 kb on + strandat 211.002 kb on + strandat 211.031 kb on + strandat 211.089 kb on - strandat 211.118 kb on + strandat 211.118 kb on + strandat 211.119 kb on - strandat 211.126 kb on - strandat 211.191 kb on - strand, within CCNA_00197at 211.211 kb on - strand, within CCNA_00197at 211.561 kb on - strandat 212.288 kb on - strandat 212.288 kb on - strandat 212.293 kb on + strandat 212.295 kb on - strandat 212.295 kb on - strandat 212.316 kb on - strandat 212.325 kb on + strandat 212.377 kb on + strandat 212.382 kb on + strandat 212.382 kb on + strandat 212.382 kb on + strandat 212.398 kb on + strandat 212.409 kb on + strandat 212.415 kb on + strandat 212.423 kb on - strandat 212.448 kb on + strandat 212.464 kb on - strandat 212.492 kb on + strandat 212.500 kb on - strandat 212.520 kb on + strandat 212.529 kb on + strandat 212.529 kb on + strandat 212.529 kb on - strandat 212.529 kb on - strandat 212.529 kb on - strandat 212.530 kb on + strandat 212.574 kb on - strandat 212.586 kb on + strand, within CCNA_00199at 212.633 kb on - strand, within CCNA_00199at 212.638 kb on - strand, within CCNA_00199at 212.638 kb on - strand, within CCNA_00199at 212.675 kb on + strand, within CCNA_00199at 212.675 kb on + strand, within CCNA_00199at 212.746 kb on + strand, within CCNA_00199at 212.771 kb on - strand, within CCNA_00199at 212.850 kb on - strand, within CCNA_00199at 212.858 kb on + strand, within CCNA_00199at 212.858 kb on + strand, within CCNA_00199at 212.946 kb on + strand, within CCNA_00199at 212.954 kb on - strand, within CCNA_00199at 212.994 kb on - strand, within CCNA_00199at 212.999 kb on - strand, within CCNA_00199at 213.039 kb on + strand, within CCNA_00199at 213.042 kb on - strand, within CCNA_00199at 213.047 kb on - strand, within CCNA_00199at 213.047 kb on - strand, within CCNA_00199at 213.047 kb on - strand, within CCNA_00199at 213.057 kb on - strand, within CCNA_00199at 213.057 kb on - strand, within CCNA_00199at 213.057 kb on - strand, within CCNA_00199at 213.084 kb on - strand, within CCNA_00199at 213.104 kb on + strand, within CCNA_00199at 213.109 kb on + strand, within CCNA_00199at 213.114 kb on - strand, within CCNA_00199at 213.143 kb on - strand, within CCNA_00199at 213.144 kb on + strand, within CCNA_00199at 213.144 kb on + strand, within CCNA_00199at 213.152 kb on - strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.159 kb on - strand, within CCNA_00199at 213.159 kb on - strand, within CCNA_00199at 213.162 kb on - strand, within CCNA_00199at 213.162 kb on - strand, within CCNA_00199at 213.169 kb on + strand, within CCNA_00199at 213.214 kb on + strand, within CCNA_00199at 213.222 kb on - strand, within CCNA_00199at 213.226 kb on + strand, within CCNA_00199at 213.226 kb on + strand, within CCNA_00199at 213.231 kb on + strand, within CCNA_00199at 213.231 kb on - strand, within CCNA_00199at 213.234 kb on - strand, within CCNA_00199at 213.239 kb on - strand, within CCNA_00199at 213.249 kb on - strand, within CCNA_00199

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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210,640 - -2.2
210,662 - -0.0
210,709 + -0.3
210,717 - +0.3
210,717 - -0.0
210,748 - +0.2
210,838 + +0.1
210,849 + -0.2
210,854 + -0.4
210,859 + -0.6
210,867 - -1.0
210,867 - +1.1
210,867 - +0.7
210,867 - -0.1
210,912 + -1.0
210,912 + +0.7
210,913 + -2.4
210,973 + +0.5
210,981 - -1.5
211,001 + +1.4
211,002 + -0.2
211,031 + +0.2
211,089 - +0.7
211,118 + -0.3
211,118 + +0.1
211,119 - -0.0
211,126 - +0.0
211,191 - CCNA_00197 0.17 -0.5
211,211 - CCNA_00197 0.22 -1.4
211,561 - -0.2
212,288 - -0.2
212,288 - -0.6
212,293 + -0.6
212,295 - -0.0
212,295 - -0.3
212,316 - +0.5
212,325 + +0.4
212,377 + -1.4
212,382 + -2.1
212,382 + +0.7
212,382 + +0.2
212,398 + +0.4
212,409 + -0.7
212,415 + +0.7
212,423 - -1.4
212,448 + +0.0
212,464 - -0.8
212,492 + +0.1
212,500 - -0.0
212,520 + +2.1
212,529 + +1.2
212,529 + -0.2
212,529 - -0.7
212,529 - -0.1
212,529 - -1.6
212,530 + +0.5
212,574 - -0.2
212,586 + CCNA_00199 0.11 +0.2
212,633 - CCNA_00199 0.13 -0.4
212,638 - CCNA_00199 0.13 +0.1
212,638 - CCNA_00199 0.13 -0.6
212,675 + CCNA_00199 0.15 -0.2
212,675 + CCNA_00199 0.15 +0.1
212,746 + CCNA_00199 0.19 -0.1
212,771 - CCNA_00199 0.20 -0.3
212,850 - CCNA_00199 0.25 -0.6
212,858 + CCNA_00199 0.25 -0.6
212,858 + CCNA_00199 0.25 -0.3
212,946 + CCNA_00199 0.30 +0.1
212,954 - CCNA_00199 0.30 -1.1
212,994 - CCNA_00199 0.32 -0.1
212,999 - CCNA_00199 0.33 -0.3
213,039 + CCNA_00199 0.35 -0.6
213,042 - CCNA_00199 0.35 -1.0
213,047 - CCNA_00199 0.35 +0.3
213,047 - CCNA_00199 0.35 -0.2
213,047 - CCNA_00199 0.35 +0.4
213,057 - CCNA_00199 0.36 +0.2
213,057 - CCNA_00199 0.36 -0.8
213,057 - CCNA_00199 0.36 -0.3
213,084 - CCNA_00199 0.37 -1.5
213,104 + CCNA_00199 0.38 +0.3
213,109 + CCNA_00199 0.38 +0.1
213,114 - CCNA_00199 0.39 +0.4
213,143 - CCNA_00199 0.40 -0.2
213,144 + CCNA_00199 0.40 +0.4
213,144 + CCNA_00199 0.40 -0.2
213,152 - CCNA_00199 0.41 -0.1
213,154 + CCNA_00199 0.41 +0.3
213,154 + CCNA_00199 0.41 +0.4
213,154 + CCNA_00199 0.41 +0.1
213,154 + CCNA_00199 0.41 +0.2
213,154 + CCNA_00199 0.41 +0.5
213,154 + CCNA_00199 0.41 -2.2
213,154 + CCNA_00199 0.41 -0.6
213,159 - CCNA_00199 0.41 +0.0
213,159 - CCNA_00199 0.41 -1.0
213,162 - CCNA_00199 0.41 -0.2
213,162 - CCNA_00199 0.41 +0.5
213,169 + CCNA_00199 0.42 +0.7
213,214 + CCNA_00199 0.44 -1.3
213,222 - CCNA_00199 0.44 +0.4
213,226 + CCNA_00199 0.45 -0.4
213,226 + CCNA_00199 0.45 +0.0
213,231 + CCNA_00199 0.45 +0.5
213,231 - CCNA_00199 0.45 -1.2
213,234 - CCNA_00199 0.45 -0.2
213,239 - CCNA_00199 0.45 -1.4
213,249 - CCNA_00199 0.46 -0.4

Or see this region's nucleotide sequence