Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00178

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00175 and CCNA_00176 overlap by 86 nucleotidesCCNA_00176 and CCNA_00177 overlap by 32 nucleotidesCCNA_00177 and CCNA_00178 overlap by 4 nucleotidesCCNA_00178 and CCNA_00179 overlap by 4 nucleotidesCCNA_00179 and CCNA_00180 overlap by 19 nucleotides CCNA_00175: CCNA_00175 - type II secretion pathway protein G, at 191,032 to 191,484 _00175 CCNA_00176: CCNA_00176 - type II secretion pathway protein H, at 191,399 to 191,956 _00176 CCNA_00177: CCNA_00177 - type II secretion pathway protein I, at 191,925 to 192,308 _00177 CCNA_00178: CCNA_00178 - type II secretion pathway protein J, at 192,305 to 192,895 _00178 CCNA_00179: CCNA_00179 - type II secretion pathway protein K, at 192,892 to 193,866 _00179 CCNA_00180: CCNA_00180 - type II secretion pathway protein L, at 193,848 to 194,954 _00180 Position (kb) 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1at 191.307 kb on - strand, within CCNA_00175at 191.312 kb on - strand, within CCNA_00175at 191.312 kb on - strand, within CCNA_00175at 191.349 kb on + strand, within CCNA_00175at 191.357 kb on - strand, within CCNA_00175at 191.374 kb on + strand, within CCNA_00175at 191.376 kb on + strand, within CCNA_00175at 191.379 kb on + strand, within CCNA_00175at 191.452 kb on + strandat 191.485 kb on + strand, within CCNA_00176at 191.493 kb on - strand, within CCNA_00176at 191.493 kb on - strand, within CCNA_00176at 191.494 kb on + strand, within CCNA_00176at 191.502 kb on - strand, within CCNA_00176at 191.513 kb on + strand, within CCNA_00176at 191.518 kb on + strand, within CCNA_00176at 191.523 kb on + strand, within CCNA_00176at 191.531 kb on - strand, within CCNA_00176at 191.539 kb on + strand, within CCNA_00176at 191.539 kb on + strand, within CCNA_00176at 191.540 kb on - strand, within CCNA_00176at 191.547 kb on - strand, within CCNA_00176at 191.567 kb on + strand, within CCNA_00176at 191.567 kb on - strand, within CCNA_00176at 191.579 kb on + strand, within CCNA_00176at 191.584 kb on + strand, within CCNA_00176at 191.586 kb on + strand, within CCNA_00176at 191.586 kb on + strand, within CCNA_00176at 191.586 kb on + strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.592 kb on - strand, within CCNA_00176at 191.626 kb on - strand, within CCNA_00176at 191.645 kb on + strand, within CCNA_00176at 191.695 kb on + strand, within CCNA_00176at 191.753 kb on + strand, within CCNA_00176at 191.761 kb on - strand, within CCNA_00176at 191.761 kb on - strand, within CCNA_00176at 191.788 kb on + strand, within CCNA_00176at 191.828 kb on - strand, within CCNA_00176at 191.828 kb on - strand, within CCNA_00176at 191.880 kb on + strand, within CCNA_00176at 191.888 kb on + strand, within CCNA_00176at 191.962 kb on + strandat 191.969 kb on - strand, within CCNA_00177at 191.984 kb on + strand, within CCNA_00177at 192.007 kb on - strand, within CCNA_00177at 192.020 kb on - strand, within CCNA_00177at 192.023 kb on + strand, within CCNA_00177at 192.023 kb on + strand, within CCNA_00177at 192.070 kb on + strand, within CCNA_00177at 192.090 kb on + strand, within CCNA_00177at 192.098 kb on - strand, within CCNA_00177at 192.108 kb on + strand, within CCNA_00177at 192.138 kb on + strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.195 kb on + strand, within CCNA_00177at 192.200 kb on + strand, within CCNA_00177at 192.203 kb on - strand, within CCNA_00177at 192.243 kb on + strand, within CCNA_00177at 192.251 kb on - strand, within CCNA_00177at 192.252 kb on - strand, within CCNA_00177at 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.298 kb on - strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.320 kb on - strandat 192.330 kb on - strandat 192.356 kb on - strandat 192.358 kb on + strandat 192.358 kb on + strandat 192.366 kb on - strand, within CCNA_00178at 192.366 kb on - strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.395 kb on - strand, within CCNA_00178at 192.426 kb on - strand, within CCNA_00178at 192.570 kb on - strand, within CCNA_00178at 192.579 kb on + strand, within CCNA_00178at 192.579 kb on + strand, within CCNA_00178at 192.587 kb on - strand, within CCNA_00178at 192.594 kb on + strand, within CCNA_00178at 192.594 kb on + strand, within CCNA_00178at 192.621 kb on - strand, within CCNA_00178at 192.642 kb on + strand, within CCNA_00178at 192.650 kb on - strand, within CCNA_00178at 192.680 kb on + strand, within CCNA_00178at 192.686 kb on + strand, within CCNA_00178at 192.694 kb on - strand, within CCNA_00178at 192.696 kb on + strand, within CCNA_00178at 192.703 kb on + strand, within CCNA_00178at 192.719 kb on + strand, within CCNA_00178at 192.768 kb on + strand, within CCNA_00178at 192.768 kb on + strand, within CCNA_00178at 192.784 kb on - strand, within CCNA_00178at 192.804 kb on - strand, within CCNA_00178at 192.817 kb on - strand, within CCNA_00178at 192.819 kb on - strand, within CCNA_00178at 192.831 kb on + strand, within CCNA_00178at 192.873 kb on - strandat 192.876 kb on + strandat 192.876 kb on + strandat 192.876 kb on + strandat 192.895 kb on - strandat 192.919 kb on + strandat 192.959 kb on - strandat 193.022 kb on + strand, within CCNA_00179at 193.028 kb on + strand, within CCNA_00179at 193.030 kb on - strand, within CCNA_00179at 193.104 kb on + strand, within CCNA_00179at 193.104 kb on + strand, within CCNA_00179at 193.112 kb on - strand, within CCNA_00179at 193.112 kb on - strand, within CCNA_00179at 193.159 kb on + strand, within CCNA_00179at 193.207 kb on + strand, within CCNA_00179at 193.210 kb on - strand, within CCNA_00179at 193.215 kb on - strand, within CCNA_00179at 193.234 kb on - strand, within CCNA_00179at 193.275 kb on + strand, within CCNA_00179at 193.282 kb on + strand, within CCNA_00179at 193.283 kb on - strand, within CCNA_00179at 193.290 kb on - strand, within CCNA_00179at 193.303 kb on + strand, within CCNA_00179at 193.313 kb on + strand, within CCNA_00179at 193.321 kb on - strand, within CCNA_00179at 193.360 kb on - strand, within CCNA_00179at 193.391 kb on + strand, within CCNA_00179at 193.410 kb on - strand, within CCNA_00179at 193.410 kb on - strand, within CCNA_00179at 193.430 kb on - strand, within CCNA_00179at 193.479 kb on + strand, within CCNA_00179at 193.487 kb on - strand, within CCNA_00179at 193.496 kb on + strand, within CCNA_00179at 193.504 kb on - strand, within CCNA_00179at 193.516 kb on - strand, within CCNA_00179at 193.542 kb on + strand, within CCNA_00179at 193.542 kb on + strand, within CCNA_00179at 193.550 kb on - strand, within CCNA_00179at 193.582 kb on + strand, within CCNA_00179at 193.624 kb on + strand, within CCNA_00179at 193.624 kb on + strand, within CCNA_00179at 193.650 kb on - strand, within CCNA_00179at 193.669 kb on - strand, within CCNA_00179at 193.704 kb on + strand, within CCNA_00179at 193.706 kb on + strand, within CCNA_00179at 193.714 kb on - strand, within CCNA_00179at 193.720 kb on + strand, within CCNA_00179at 193.796 kb on - strandat 193.796 kb on - strandat 193.826 kb on + strandat 193.830 kb on + strandat 193.866 kb on + strandat 193.876 kb on + strandat 193.878 kb on + strandat 193.878 kb on + strandat 193.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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191,307 - CCNA_00175 0.61 -0.2
191,312 - CCNA_00175 0.62 -0.6
191,312 - CCNA_00175 0.62 -0.2
191,349 + CCNA_00175 0.70 -0.6
191,357 - CCNA_00175 0.72 -0.3
191,374 + CCNA_00175 0.75 -0.1
191,376 + CCNA_00175 0.76 +0.1
191,379 + CCNA_00175 0.77 -0.8
191,452 + -0.6
191,485 + CCNA_00176 0.15 -0.1
191,493 - CCNA_00176 0.17 -0.3
191,493 - CCNA_00176 0.17 +1.3
191,494 + CCNA_00176 0.17 -0.7
191,502 - CCNA_00176 0.18 -0.1
191,513 + CCNA_00176 0.20 +0.1
191,518 + CCNA_00176 0.21 +0.5
191,523 + CCNA_00176 0.22 -0.4
191,531 - CCNA_00176 0.24 -0.5
191,539 + CCNA_00176 0.25 +0.1
191,539 + CCNA_00176 0.25 -0.3
191,540 - CCNA_00176 0.25 -0.2
191,547 - CCNA_00176 0.27 +0.1
191,567 + CCNA_00176 0.30 -1.3
191,567 - CCNA_00176 0.30 +1.0
191,579 + CCNA_00176 0.32 -0.3
191,584 + CCNA_00176 0.33 -0.1
191,586 + CCNA_00176 0.34 -0.6
191,586 + CCNA_00176 0.34 -0.5
191,586 + CCNA_00176 0.34 -0.3
191,592 - CCNA_00176 0.35 -1.1
191,592 - CCNA_00176 0.35 -0.1
191,592 - CCNA_00176 0.35 -1.7
191,592 - CCNA_00176 0.35 -1.8
191,592 - CCNA_00176 0.35 -0.4
191,626 - CCNA_00176 0.41 -0.8
191,645 + CCNA_00176 0.44 -0.1
191,695 + CCNA_00176 0.53 +0.2
191,753 + CCNA_00176 0.63 -0.3
191,761 - CCNA_00176 0.65 -0.5
191,761 - CCNA_00176 0.65 +0.4
191,788 + CCNA_00176 0.70 -0.1
191,828 - CCNA_00176 0.77 +0.4
191,828 - CCNA_00176 0.77 -1.2
191,880 + CCNA_00176 0.86 -0.4
191,888 + CCNA_00176 0.88 +0.5
191,962 + +0.3
191,969 - CCNA_00177 0.11 -1.2
191,984 + CCNA_00177 0.15 -0.3
192,007 - CCNA_00177 0.21 -0.3
192,020 - CCNA_00177 0.25 -0.8
192,023 + CCNA_00177 0.26 +0.3
192,023 + CCNA_00177 0.26 -0.1
192,070 + CCNA_00177 0.38 -0.0
192,090 + CCNA_00177 0.43 -0.1
192,098 - CCNA_00177 0.45 -1.0
192,108 + CCNA_00177 0.48 -0.4
192,138 + CCNA_00177 0.55 +0.6
192,146 - CCNA_00177 0.58 -0.2
192,146 - CCNA_00177 0.58 -0.7
192,195 + CCNA_00177 0.70 +0.1
192,200 + CCNA_00177 0.72 +0.2
192,203 - CCNA_00177 0.72 -0.0
192,243 + CCNA_00177 0.83 -0.6
192,251 - CCNA_00177 0.85 -1.2
192,252 - CCNA_00177 0.85 +1.2
192,290 + -0.7
192,290 + -1.4
192,290 + -1.4
192,290 + +0.8
192,290 + -0.1
192,290 + +0.0
192,290 + -0.2
192,290 + -0.3
192,290 + +0.2
192,298 - -0.8
192,312 + +1.1
192,312 + +0.3
192,312 + -0.2
192,312 + -0.4
192,320 - +0.5
192,330 - +0.2
192,356 - -0.5
192,358 + +1.4
192,358 + +0.5
192,366 - CCNA_00178 0.10 -0.6
192,366 - CCNA_00178 0.10 -0.3
192,387 + CCNA_00178 0.14 -0.0
192,387 + CCNA_00178 0.14 +1.0
192,387 + CCNA_00178 0.14 +0.0
192,395 - CCNA_00178 0.15 -0.3
192,426 - CCNA_00178 0.20 -1.3
192,570 - CCNA_00178 0.45 -1.3
192,579 + CCNA_00178 0.46 -0.8
192,579 + CCNA_00178 0.46 -0.6
192,587 - CCNA_00178 0.48 +0.0
192,594 + CCNA_00178 0.49 -0.6
192,594 + CCNA_00178 0.49 -0.4
192,621 - CCNA_00178 0.53 -0.4
192,642 + CCNA_00178 0.57 -0.5
192,650 - CCNA_00178 0.58 -0.6
192,680 + CCNA_00178 0.63 -0.1
192,686 + CCNA_00178 0.64 -3.5
192,694 - CCNA_00178 0.66 -0.5
192,696 + CCNA_00178 0.66 -0.2
192,703 + CCNA_00178 0.67 -0.5
192,719 + CCNA_00178 0.70 -0.2
192,768 + CCNA_00178 0.78 +0.5
192,768 + CCNA_00178 0.78 +1.0
192,784 - CCNA_00178 0.81 +1.1
192,804 - CCNA_00178 0.84 -0.8
192,817 - CCNA_00178 0.87 +0.1
192,819 - CCNA_00178 0.87 +0.0
192,831 + CCNA_00178 0.89 -0.9
192,873 - +0.0
192,876 + -0.5
192,876 + -0.6
192,876 + +0.0
192,895 - +0.0
192,919 + -0.3
192,959 - -0.7
193,022 + CCNA_00179 0.13 -0.1
193,028 + CCNA_00179 0.14 -1.4
193,030 - CCNA_00179 0.14 -0.2
193,104 + CCNA_00179 0.22 -2.1
193,104 + CCNA_00179 0.22 +0.4
193,112 - CCNA_00179 0.23 -1.3
193,112 - CCNA_00179 0.23 -1.3
193,159 + CCNA_00179 0.27 -0.9
193,207 + CCNA_00179 0.32 -0.5
193,210 - CCNA_00179 0.33 +0.4
193,215 - CCNA_00179 0.33 -0.2
193,234 - CCNA_00179 0.35 -0.7
193,275 + CCNA_00179 0.39 -0.2
193,282 + CCNA_00179 0.40 +0.7
193,283 - CCNA_00179 0.40 +0.5
193,290 - CCNA_00179 0.41 -0.7
193,303 + CCNA_00179 0.42 +0.6
193,313 + CCNA_00179 0.43 +0.2
193,321 - CCNA_00179 0.44 -1.0
193,360 - CCNA_00179 0.48 +0.2
193,391 + CCNA_00179 0.51 +0.2
193,410 - CCNA_00179 0.53 +0.3
193,410 - CCNA_00179 0.53 +0.0
193,430 - CCNA_00179 0.55 +0.5
193,479 + CCNA_00179 0.60 -0.2
193,487 - CCNA_00179 0.61 -0.5
193,496 + CCNA_00179 0.62 +0.4
193,504 - CCNA_00179 0.63 -0.4
193,516 - CCNA_00179 0.64 -0.3
193,542 + CCNA_00179 0.67 +0.0
193,542 + CCNA_00179 0.67 +1.0
193,550 - CCNA_00179 0.67 +0.2
193,582 + CCNA_00179 0.71 +0.2
193,624 + CCNA_00179 0.75 -1.0
193,624 + CCNA_00179 0.75 -0.3
193,650 - CCNA_00179 0.78 -2.4
193,669 - CCNA_00179 0.80 +0.0
193,704 + CCNA_00179 0.83 +0.7
193,706 + CCNA_00179 0.83 -0.4
193,714 - CCNA_00179 0.84 +0.2
193,720 + CCNA_00179 0.85 -0.3
193,796 - -0.5
193,796 - -0.7
193,826 + +1.3
193,830 + +0.6
193,866 + +0.1
193,876 + +0.4
193,878 + +0.0
193,878 + +0.5
193,878 + +0.5

Or see this region's nucleotide sequence