Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00165

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00164 and CCNA_00165 overlap by 7 nucleotidesCCNA_00165 and CCNA_03915 are separated by 198 nucleotidesCCNA_03915 and CCNA_00166 are separated by 161 nucleotides CCNA_00164: CCNA_00164 - O-antigen polymerase, at 175,173 to 177,098 _00164 CCNA_00165: CCNA_00165 - polyisoprenylphosphate hexose-1-phosphotransferase pssY, at 177,092 to 177,745 _00165 CCNA_03915: CCNA_03915 - hypothetical protein, at 177,944 to 178,090 _03915 CCNA_00166: CCNA_00166 - putative transglutaminase-like cysteine proteinase, at 178,252 to 179,070 _00166 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 176.121 kb on + strand, within CCNA_00164at 176.224 kb on - strand, within CCNA_00164at 176.243 kb on + strand, within CCNA_00164at 176.250 kb on - strand, within CCNA_00164at 176.289 kb on - strand, within CCNA_00164at 176.312 kb on + strand, within CCNA_00164at 176.320 kb on - strand, within CCNA_00164at 176.348 kb on + strand, within CCNA_00164at 176.378 kb on - strand, within CCNA_00164at 176.383 kb on - strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.393 kb on - strand, within CCNA_00164at 176.393 kb on - strand, within CCNA_00164at 176.406 kb on + strand, within CCNA_00164at 176.426 kb on + strand, within CCNA_00164at 176.426 kb on + strand, within CCNA_00164at 176.445 kb on - strand, within CCNA_00164at 176.488 kb on + strand, within CCNA_00164at 176.496 kb on - strand, within CCNA_00164at 176.501 kb on + strand, within CCNA_00164at 176.506 kb on + strand, within CCNA_00164at 176.509 kb on - strand, within CCNA_00164at 176.550 kb on + strand, within CCNA_00164at 176.571 kb on + strand, within CCNA_00164at 176.596 kb on - strand, within CCNA_00164at 176.636 kb on - strand, within CCNA_00164at 176.636 kb on - strand, within CCNA_00164at 176.638 kb on - strand, within CCNA_00164at 176.638 kb on - strand, within CCNA_00164at 176.640 kb on + strand, within CCNA_00164at 176.680 kb on + strand, within CCNA_00164at 176.754 kb on + strand, within CCNA_00164at 176.817 kb on + strand, within CCNA_00164at 176.838 kb on + strand, within CCNA_00164at 176.849 kb on + strand, within CCNA_00164at 176.852 kb on - strand, within CCNA_00164at 176.913 kb on - strandat 176.939 kb on + strandat 177.006 kb on + strandat 177.007 kb on - strandat 177.014 kb on - strandat 177.019 kb on - strandat 177.026 kb on + strandat 177.040 kb on + strandat 177.040 kb on + strandat 177.087 kb on + strandat 177.127 kb on - strandat 177.127 kb on - strandat 177.141 kb on + strandat 177.141 kb on + strandat 177.149 kb on - strandat 177.153 kb on + strandat 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.233 kb on + strand, within CCNA_00165at 177.240 kb on + strand, within CCNA_00165at 177.240 kb on + strand, within CCNA_00165at 177.248 kb on - strand, within CCNA_00165at 177.248 kb on - strand, within CCNA_00165at 177.250 kb on + strand, within CCNA_00165at 177.255 kb on + strand, within CCNA_00165at 177.258 kb on - strand, within CCNA_00165at 177.263 kb on - strand, within CCNA_00165at 177.273 kb on - strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.314 kb on + strand, within CCNA_00165at 177.320 kb on - strand, within CCNA_00165at 177.320 kb on - strand, within CCNA_00165at 177.386 kb on - strand, within CCNA_00165at 177.464 kb on - strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.480 kb on - strand, within CCNA_00165at 177.481 kb on - strand, within CCNA_00165at 177.484 kb on + strand, within CCNA_00165at 177.492 kb on - strand, within CCNA_00165at 177.528 kb on + strand, within CCNA_00165at 177.533 kb on + strand, within CCNA_00165at 177.536 kb on - strand, within CCNA_00165at 177.645 kb on - strand, within CCNA_00165at 177.660 kb on - strand, within CCNA_00165at 177.660 kb on - strand, within CCNA_00165at 177.663 kb on + strand, within CCNA_00165at 177.714 kb on + strandat 177.714 kb on + strandat 177.769 kb on + strandat 177.787 kb on + strandat 177.800 kb on + strandat 177.881 kb on + strandat 178.020 kb on - strand, within CCNA_03915at 178.025 kb on - strand, within CCNA_03915at 178.027 kb on + strand, within CCNA_03915at 178.044 kb on - strand, within CCNA_03915at 178.058 kb on + strand, within CCNA_03915at 178.084 kb on + strandat 178.092 kb on - strandat 178.108 kb on + strandat 178.162 kb on + strandat 178.179 kb on + strandat 178.187 kb on - strandat 178.198 kb on + strandat 178.218 kb on + strandat 178.226 kb on - strandat 178.267 kb on + strandat 178.277 kb on + strandat 178.287 kb on + strandat 178.338 kb on + strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.381 kb on + strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.432 kb on - strand, within CCNA_00166at 178.442 kb on - strand, within CCNA_00166at 178.449 kb on + strand, within CCNA_00166at 178.457 kb on - strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.540 kb on + strand, within CCNA_00166at 178.540 kb on + strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.545 kb on + strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.563 kb on - strand, within CCNA_00166at 178.589 kb on + strand, within CCNA_00166at 178.627 kb on + strand, within CCNA_00166at 178.649 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.672 kb on - strand, within CCNA_00166at 178.696 kb on + strand, within CCNA_00166at 178.696 kb on + strand, within CCNA_00166at 178.704 kb on - strand, within CCNA_00166at 178.719 kb on - strand, within CCNA_00166at 178.742 kb on - strand, within CCNA_00166

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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176,121 + CCNA_00164 0.49 +0.6
176,224 - CCNA_00164 0.55 -0.5
176,243 + CCNA_00164 0.56 +0.6
176,250 - CCNA_00164 0.56 -0.4
176,289 - CCNA_00164 0.58 -0.5
176,312 + CCNA_00164 0.59 +0.2
176,320 - CCNA_00164 0.60 +0.4
176,348 + CCNA_00164 0.61 -0.2
176,378 - CCNA_00164 0.63 -0.6
176,383 - CCNA_00164 0.63 +1.1
176,385 + CCNA_00164 0.63 +0.5
176,385 + CCNA_00164 0.63 -1.1
176,385 + CCNA_00164 0.63 +0.1
176,385 + CCNA_00164 0.63 +0.2
176,393 - CCNA_00164 0.63 +0.1
176,393 - CCNA_00164 0.63 +0.4
176,406 + CCNA_00164 0.64 +0.3
176,426 + CCNA_00164 0.65 +0.4
176,426 + CCNA_00164 0.65 +0.4
176,445 - CCNA_00164 0.66 -0.7
176,488 + CCNA_00164 0.68 +0.5
176,496 - CCNA_00164 0.69 -1.4
176,501 + CCNA_00164 0.69 +0.3
176,506 + CCNA_00164 0.69 +0.1
176,509 - CCNA_00164 0.69 +0.2
176,550 + CCNA_00164 0.71 -0.5
176,571 + CCNA_00164 0.73 +0.3
176,596 - CCNA_00164 0.74 +0.5
176,636 - CCNA_00164 0.76 +0.0
176,636 - CCNA_00164 0.76 +0.1
176,638 - CCNA_00164 0.76 -2.1
176,638 - CCNA_00164 0.76 -0.2
176,640 + CCNA_00164 0.76 +0.2
176,680 + CCNA_00164 0.78 +1.1
176,754 + CCNA_00164 0.82 +0.6
176,817 + CCNA_00164 0.85 +0.3
176,838 + CCNA_00164 0.86 -0.3
176,849 + CCNA_00164 0.87 +0.1
176,852 - CCNA_00164 0.87 -1.9
176,913 - +0.6
176,939 + +0.3
177,006 + +0.3
177,007 - +0.2
177,014 - +1.1
177,019 - -1.0
177,026 + +0.7
177,040 + -0.3
177,040 + +0.3
177,087 + +0.6
177,127 - +0.0
177,127 - -0.4
177,141 + +0.1
177,141 + +0.1
177,149 - +0.1
177,153 + +0.3
177,167 + CCNA_00165 0.11 +0.1
177,167 + CCNA_00165 0.11 +0.2
177,167 + CCNA_00165 0.11 -0.6
177,167 + CCNA_00165 0.11 +0.9
177,167 + CCNA_00165 0.11 -0.1
177,175 - CCNA_00165 0.13 +0.0
177,175 - CCNA_00165 0.13 +0.3
177,175 - CCNA_00165 0.13 +0.3
177,233 + CCNA_00165 0.22 +0.4
177,240 + CCNA_00165 0.23 -0.0
177,240 + CCNA_00165 0.23 +0.2
177,248 - CCNA_00165 0.24 +0.4
177,248 - CCNA_00165 0.24 +1.1
177,250 + CCNA_00165 0.24 +0.1
177,255 + CCNA_00165 0.25 -0.0
177,258 - CCNA_00165 0.25 +1.3
177,263 - CCNA_00165 0.26 +0.6
177,273 - CCNA_00165 0.28 +0.4
177,312 + CCNA_00165 0.34 +0.6
177,312 + CCNA_00165 0.34 +0.2
177,312 + CCNA_00165 0.34 +0.2
177,312 + CCNA_00165 0.34 -0.9
177,312 + CCNA_00165 0.34 +0.2
177,312 + CCNA_00165 0.34 +1.4
177,314 + CCNA_00165 0.34 +1.3
177,320 - CCNA_00165 0.35 -0.7
177,320 - CCNA_00165 0.35 +0.5
177,386 - CCNA_00165 0.45 -0.3
177,464 - CCNA_00165 0.57 +0.3
177,472 + CCNA_00165 0.58 -0.6
177,472 + CCNA_00165 0.58 -0.3
177,472 + CCNA_00165 0.58 +1.5
177,472 + CCNA_00165 0.58 +0.2
177,472 + CCNA_00165 0.58 -0.3
177,480 - CCNA_00165 0.59 +0.4
177,481 - CCNA_00165 0.59 +0.8
177,484 + CCNA_00165 0.60 -0.2
177,492 - CCNA_00165 0.61 +0.0
177,528 + CCNA_00165 0.67 -0.2
177,533 + CCNA_00165 0.67 +0.2
177,536 - CCNA_00165 0.68 +0.5
177,645 - CCNA_00165 0.85 -0.3
177,660 - CCNA_00165 0.87 +0.6
177,660 - CCNA_00165 0.87 +0.1
177,663 + CCNA_00165 0.87 -0.0
177,714 + -0.4
177,714 + -0.2
177,769 + -0.1
177,787 + +0.3
177,800 + +0.5
177,881 + -2.2
178,020 - CCNA_03915 0.52 -0.1
178,025 - CCNA_03915 0.55 +1.0
178,027 + CCNA_03915 0.56 +0.3
178,044 - CCNA_03915 0.68 -0.8
178,058 + CCNA_03915 0.78 +0.7
178,084 + +0.3
178,092 - +0.5
178,108 + +0.2
178,162 + -0.2
178,179 + +0.8
178,187 - +0.5
178,198 + +0.2
178,218 + -0.6
178,226 - +0.4
178,267 + +0.2
178,277 + +0.6
178,287 + +1.2
178,338 + CCNA_00166 0.11 -1.9
178,346 - CCNA_00166 0.11 -0.5
178,381 + CCNA_00166 0.16 -0.6
178,389 - CCNA_00166 0.17 +0.3
178,389 - CCNA_00166 0.17 +0.5
178,389 - CCNA_00166 0.17 -0.9
178,389 - CCNA_00166 0.17 -0.1
178,432 - CCNA_00166 0.22 -0.6
178,442 - CCNA_00166 0.23 -2.9
178,449 + CCNA_00166 0.24 -0.4
178,457 - CCNA_00166 0.25 +0.5
178,502 + CCNA_00166 0.31 +2.1
178,502 + CCNA_00166 0.31 +0.6
178,502 + CCNA_00166 0.31 +0.4
178,502 + CCNA_00166 0.31 -0.9
178,502 + CCNA_00166 0.31 -0.6
178,510 - CCNA_00166 0.32 -0.1
178,510 - CCNA_00166 0.32 -0.1
178,510 - CCNA_00166 0.32 -0.2
178,510 - CCNA_00166 0.32 -0.6
178,510 - CCNA_00166 0.32 -0.0
178,535 + CCNA_00166 0.35 +0.4
178,535 + CCNA_00166 0.35 +0.1
178,535 + CCNA_00166 0.35 +0.7
178,540 + CCNA_00166 0.35 +0.4
178,540 + CCNA_00166 0.35 +1.0
178,543 - CCNA_00166 0.36 +0.3
178,543 - CCNA_00166 0.36 +0.1
178,543 - CCNA_00166 0.36 +0.4
178,543 - CCNA_00166 0.36 +0.5
178,545 + CCNA_00166 0.36 -1.0
178,548 - CCNA_00166 0.36 +0.0
178,548 - CCNA_00166 0.36 +0.1
178,548 - CCNA_00166 0.36 -0.4
178,563 - CCNA_00166 0.38 -1.7
178,589 + CCNA_00166 0.41 -0.6
178,627 + CCNA_00166 0.46 +0.4
178,649 + CCNA_00166 0.48 -0.1
178,654 + CCNA_00166 0.49 +0.1
178,662 - CCNA_00166 0.50 -0.1
178,662 - CCNA_00166 0.50 -0.2
178,664 + CCNA_00166 0.50 -1.5
178,672 - CCNA_00166 0.51 -0.1
178,696 + CCNA_00166 0.54 -0.5
178,696 + CCNA_00166 0.54 +0.2
178,704 - CCNA_00166 0.55 +0.9
178,719 - CCNA_00166 0.57 -1.5
178,742 - CCNA_00166 0.60 +0.3

Or see this region's nucleotide sequence