Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00078

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00077 and CCNA_00078 are separated by 2 nucleotidesCCNA_00078 and CCNA_00079 are separated by 87 nucleotidesCCNA_00079 and CCNA_00080 are separated by 193 nucleotides CCNA_00077: CCNA_00077 - acyl-CoA dehydrogenase, long-chain specific, at 80,355 to 81,530 _00077 CCNA_00078: CCNA_00078 - acyl-CoA dehydrogenase, at 81,533 to 83,326 _00078 CCNA_00079: CCNA_00079 - MerR-family transcriptional regulator, at 83,414 to 83,893 _00079 CCNA_00080: CCNA_00080 - LexA-related transcriptional repressor, at 84,087 to 84,728 _00080 Position (kb) 81 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 80.570 kb on - strand, within CCNA_00077at 80.608 kb on - strand, within CCNA_00077at 80.662 kb on + strand, within CCNA_00077at 80.680 kb on + strand, within CCNA_00077at 80.680 kb on + strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.688 kb on + strand, within CCNA_00077at 80.711 kb on + strand, within CCNA_00077at 80.714 kb on - strand, within CCNA_00077at 80.734 kb on + strand, within CCNA_00077at 80.739 kb on + strand, within CCNA_00077at 80.739 kb on + strand, within CCNA_00077at 80.739 kb on + strand, within CCNA_00077at 80.747 kb on - strand, within CCNA_00077at 80.749 kb on + strand, within CCNA_00077at 80.749 kb on + strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.796 kb on + strand, within CCNA_00077at 80.804 kb on - strand, within CCNA_00077at 80.804 kb on - strand, within CCNA_00077at 80.812 kb on + strand, within CCNA_00077at 80.815 kb on - strand, within CCNA_00077at 80.858 kb on + strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.910 kb on + strand, within CCNA_00077at 80.918 kb on - strand, within CCNA_00077at 80.951 kb on - strand, within CCNA_00077at 80.955 kb on + strand, within CCNA_00077at 80.955 kb on + strand, within CCNA_00077at 80.963 kb on - strand, within CCNA_00077at 80.963 kb on - strand, within CCNA_00077at 80.963 kb on - strand, within CCNA_00077at 81.004 kb on + strand, within CCNA_00077at 81.017 kb on - strand, within CCNA_00077at 81.017 kb on - strand, within CCNA_00077at 81.036 kb on + strand, within CCNA_00077at 81.091 kb on + strand, within CCNA_00077at 81.091 kb on + strand, within CCNA_00077at 81.092 kb on + strand, within CCNA_00077at 81.115 kb on - strand, within CCNA_00077at 81.142 kb on + strand, within CCNA_00077at 81.150 kb on - strand, within CCNA_00077at 81.160 kb on - strand, within CCNA_00077at 81.160 kb on - strand, within CCNA_00077at 81.166 kb on + strand, within CCNA_00077at 81.194 kb on - strand, within CCNA_00077at 81.207 kb on - strand, within CCNA_00077at 81.222 kb on - strand, within CCNA_00077at 81.222 kb on - strand, within CCNA_00077at 81.232 kb on + strand, within CCNA_00077at 81.245 kb on - strand, within CCNA_00077at 81.337 kb on + strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.375 kb on + strand, within CCNA_00077at 81.428 kb on + strandat 81.436 kb on - strandat 81.483 kb on + strandat 81.576 kb on + strandat 81.576 kb on + strandat 81.576 kb on + strandat 81.584 kb on - strandat 81.584 kb on - strandat 81.590 kb on - strandat 81.609 kb on + strandat 81.639 kb on + strandat 81.684 kb on + strandat 81.692 kb on - strandat 81.699 kb on + strandat 81.704 kb on + strandat 81.714 kb on + strand, within CCNA_00078at 81.719 kb on + strand, within CCNA_00078at 81.719 kb on + strand, within CCNA_00078at 81.720 kb on + strand, within CCNA_00078at 81.720 kb on - strand, within CCNA_00078at 81.725 kb on + strand, within CCNA_00078at 81.725 kb on + strand, within CCNA_00078at 81.727 kb on - strand, within CCNA_00078at 81.727 kb on - strand, within CCNA_00078at 81.747 kb on - strand, within CCNA_00078at 81.832 kb on - strand, within CCNA_00078at 81.843 kb on + strand, within CCNA_00078at 81.848 kb on + strand, within CCNA_00078at 81.848 kb on + strand, within CCNA_00078at 81.856 kb on - strand, within CCNA_00078at 81.868 kb on + strand, within CCNA_00078at 81.876 kb on - strand, within CCNA_00078at 81.876 kb on - strand, within CCNA_00078at 81.876 kb on - strand, within CCNA_00078at 81.897 kb on + strand, within CCNA_00078at 81.934 kb on - strand, within CCNA_00078at 81.942 kb on - strand, within CCNA_00078at 81.969 kb on + strand, within CCNA_00078at 81.974 kb on + strand, within CCNA_00078at 81.974 kb on + strand, within CCNA_00078at 81.977 kb on - strand, within CCNA_00078at 81.977 kb on - strand, within CCNA_00078at 81.982 kb on - strand, within CCNA_00078at 82.002 kb on + strand, within CCNA_00078at 82.007 kb on + strand, within CCNA_00078at 82.052 kb on - strand, within CCNA_00078at 82.062 kb on - strand, within CCNA_00078at 82.079 kb on + strand, within CCNA_00078at 82.079 kb on + strand, within CCNA_00078at 82.087 kb on - strand, within CCNA_00078at 82.087 kb on - strand, within CCNA_00078at 82.089 kb on + strand, within CCNA_00078at 82.089 kb on + strand, within CCNA_00078at 82.110 kb on - strand, within CCNA_00078at 82.136 kb on - strand, within CCNA_00078at 82.150 kb on + strand, within CCNA_00078at 82.153 kb on - strand, within CCNA_00078at 82.155 kb on + strand, within CCNA_00078at 82.185 kb on + strand, within CCNA_00078at 82.191 kb on + strand, within CCNA_00078at 82.224 kb on + strand, within CCNA_00078at 82.224 kb on + strand, within CCNA_00078at 82.224 kb on + strand, within CCNA_00078at 82.224 kb on + strand, within CCNA_00078at 82.224 kb on + strand, within CCNA_00078at 82.232 kb on - strand, within CCNA_00078at 82.248 kb on + strand, within CCNA_00078at 82.256 kb on - strand, within CCNA_00078at 82.268 kb on + strand, within CCNA_00078at 82.268 kb on - strand, within CCNA_00078at 82.291 kb on - strand, within CCNA_00078at 82.359 kb on + strand, within CCNA_00078at 82.372 kb on - strand, within CCNA_00078at 82.378 kb on - strand, within CCNA_00078at 82.384 kb on - strand, within CCNA_00078at 82.398 kb on + strand, within CCNA_00078at 82.398 kb on + strand, within CCNA_00078at 82.398 kb on + strand, within CCNA_00078at 82.403 kb on + strand, within CCNA_00078at 82.410 kb on + strand, within CCNA_00078at 82.418 kb on + strand, within CCNA_00078at 82.418 kb on + strand, within CCNA_00078at 82.426 kb on - strand, within CCNA_00078at 82.466 kb on - strand, within CCNA_00078at 82.507 kb on - strand, within CCNA_00078at 82.509 kb on + strand, within CCNA_00078at 82.548 kb on + strand, within CCNA_00078at 82.548 kb on + strand, within CCNA_00078at 82.548 kb on + strand, within CCNA_00078at 82.565 kb on + strand, within CCNA_00078at 82.597 kb on - strand, within CCNA_00078at 82.617 kb on + strand, within CCNA_00078at 82.642 kb on + strand, within CCNA_00078at 82.645 kb on - strand, within CCNA_00078at 82.677 kb on + strand, within CCNA_00078at 82.679 kb on - strand, within CCNA_00078at 82.682 kb on + strand, within CCNA_00078at 82.687 kb on + strand, within CCNA_00078at 82.711 kb on - strand, within CCNA_00078at 82.711 kb on - strand, within CCNA_00078at 82.718 kb on - strand, within CCNA_00078at 82.718 kb on - strand, within CCNA_00078at 82.793 kb on - strand, within CCNA_00078at 82.802 kb on + strand, within CCNA_00078at 82.802 kb on + strand, within CCNA_00078at 82.810 kb on - strand, within CCNA_00078at 82.810 kb on - strand, within CCNA_00078at 82.842 kb on - strand, within CCNA_00078at 82.864 kb on - strand, within CCNA_00078at 82.996 kb on + strand, within CCNA_00078at 83.035 kb on + strand, within CCNA_00078at 83.043 kb on - strand, within CCNA_00078at 83.043 kb on - strand, within CCNA_00078at 83.043 kb on - strand, within CCNA_00078at 83.069 kb on - strand, within CCNA_00078at 83.072 kb on - strand, within CCNA_00078at 83.087 kb on + strand, within CCNA_00078at 83.087 kb on + strand, within CCNA_00078at 83.122 kb on - strand, within CCNA_00078at 83.165 kb on - strandat 83.165 kb on - strandat 83.165 kb on - strandat 83.181 kb on + strandat 83.199 kb on + strandat 83.220 kb on + strandat 83.222 kb on + strandat 83.287 kb on + strandat 83.287 kb on + strandat 83.290 kb on - strandat 83.295 kb on - strandat 83.295 kb on - strandat 83.322 kb on - strandat 83.322 kb on - strandat 83.333 kb on + strandat 83.333 kb on + strandat 83.333 kb on + strandat 83.338 kb on + strandat 83.340 kb on - strandat 83.341 kb on - strandat 83.341 kb on - strandat 83.459 kb on + strandat 83.494 kb on - strand, within CCNA_00079at 83.494 kb on - strand, within CCNA_00079at 83.537 kb on + strand, within CCNA_00079at 83.538 kb on + strand, within CCNA_00079at 83.630 kb on + strand, within CCNA_00079at 83.645 kb on + strand, within CCNA_00079at 83.739 kb on + strand, within CCNA_00079at 83.768 kb on - strand, within CCNA_00079at 83.781 kb on + strand, within CCNA_00079at 83.783 kb on + strand, within CCNA_00079at 83.838 kb on + strand, within CCNA_00079at 83.968 kb on - strandat 84.196 kb on + strand, within CCNA_00080at 84.196 kb on + strand, within CCNA_00080

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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80,570 - CCNA_00077 0.18 +0.1
80,608 - CCNA_00077 0.22 +0.3
80,662 + CCNA_00077 0.26 -0.3
80,680 + CCNA_00077 0.28 +0.3
80,680 + CCNA_00077 0.28 +0.2
80,681 - CCNA_00077 0.28 +0.2
80,681 - CCNA_00077 0.28 -0.1
80,688 + CCNA_00077 0.28 +0.2
80,711 + CCNA_00077 0.30 -1.0
80,714 - CCNA_00077 0.31 +0.4
80,734 + CCNA_00077 0.32 +2.4
80,739 + CCNA_00077 0.33 -0.1
80,739 + CCNA_00077 0.33 -0.4
80,739 + CCNA_00077 0.33 -0.4
80,747 - CCNA_00077 0.33 +1.1
80,749 + CCNA_00077 0.34 -0.3
80,749 + CCNA_00077 0.34 -0.0
80,754 + CCNA_00077 0.34 -0.6
80,796 + CCNA_00077 0.38 -0.1
80,804 - CCNA_00077 0.38 +1.5
80,804 - CCNA_00077 0.38 +0.2
80,812 + CCNA_00077 0.39 +0.0
80,815 - CCNA_00077 0.39 -0.9
80,858 + CCNA_00077 0.43 -0.6
80,868 + CCNA_00077 0.44 +0.5
80,868 + CCNA_00077 0.44 +0.3
80,868 + CCNA_00077 0.44 -0.5
80,868 + CCNA_00077 0.44 +0.1
80,868 + CCNA_00077 0.44 -0.2
80,868 + CCNA_00077 0.44 -0.2
80,910 + CCNA_00077 0.47 -0.8
80,918 - CCNA_00077 0.48 -0.1
80,951 - CCNA_00077 0.51 +0.5
80,955 + CCNA_00077 0.51 -1.1
80,955 + CCNA_00077 0.51 -1.9
80,963 - CCNA_00077 0.52 -0.5
80,963 - CCNA_00077 0.52 +0.7
80,963 - CCNA_00077 0.52 +0.1
81,004 + CCNA_00077 0.55 +0.1
81,017 - CCNA_00077 0.56 -0.7
81,017 - CCNA_00077 0.56 +0.6
81,036 + CCNA_00077 0.58 +1.2
81,091 + CCNA_00077 0.63 -0.4
81,091 + CCNA_00077 0.63 +0.2
81,092 + CCNA_00077 0.63 +0.2
81,115 - CCNA_00077 0.65 -0.9
81,142 + CCNA_00077 0.67 -0.2
81,150 - CCNA_00077 0.68 -0.3
81,160 - CCNA_00077 0.68 -0.4
81,160 - CCNA_00077 0.68 -0.1
81,166 + CCNA_00077 0.69 -0.3
81,194 - CCNA_00077 0.71 +0.3
81,207 - CCNA_00077 0.72 +1.2
81,222 - CCNA_00077 0.74 -0.5
81,222 - CCNA_00077 0.74 +0.4
81,232 + CCNA_00077 0.75 +0.4
81,245 - CCNA_00077 0.76 -1.0
81,337 + CCNA_00077 0.84 +1.8
81,345 - CCNA_00077 0.84 +0.4
81,345 - CCNA_00077 0.84 -0.5
81,345 - CCNA_00077 0.84 +0.4
81,345 - CCNA_00077 0.84 +0.1
81,375 + CCNA_00077 0.87 -0.4
81,428 + -1.1
81,436 - +0.1
81,483 + -0.9
81,576 + -0.2
81,576 + -0.8
81,576 + +0.5
81,584 - +0.3
81,584 - +0.4
81,590 - -1.1
81,609 + -0.1
81,639 + +1.8
81,684 + +0.3
81,692 - +0.1
81,699 + +0.8
81,704 + +0.4
81,714 + CCNA_00078 0.10 +1.2
81,719 + CCNA_00078 0.10 +0.6
81,719 + CCNA_00078 0.10 +0.1
81,720 + CCNA_00078 0.10 -0.4
81,720 - CCNA_00078 0.10 +0.6
81,725 + CCNA_00078 0.11 +0.1
81,725 + CCNA_00078 0.11 -0.6
81,727 - CCNA_00078 0.11 -0.3
81,727 - CCNA_00078 0.11 -1.1
81,747 - CCNA_00078 0.12 +0.4
81,832 - CCNA_00078 0.17 +0.0
81,843 + CCNA_00078 0.17 +0.3
81,848 + CCNA_00078 0.18 +0.5
81,848 + CCNA_00078 0.18 -3.1
81,856 - CCNA_00078 0.18 +0.4
81,868 + CCNA_00078 0.19 +0.0
81,876 - CCNA_00078 0.19 +1.2
81,876 - CCNA_00078 0.19 +0.3
81,876 - CCNA_00078 0.19 +0.3
81,897 + CCNA_00078 0.20 -0.4
81,934 - CCNA_00078 0.22 +0.4
81,942 - CCNA_00078 0.23 +1.0
81,969 + CCNA_00078 0.24 -0.7
81,974 + CCNA_00078 0.25 +2.4
81,974 + CCNA_00078 0.25 +1.2
81,977 - CCNA_00078 0.25 +0.3
81,977 - CCNA_00078 0.25 +0.5
81,982 - CCNA_00078 0.25 -0.6
82,002 + CCNA_00078 0.26 +0.7
82,007 + CCNA_00078 0.26 -0.1
82,052 - CCNA_00078 0.29 -0.3
82,062 - CCNA_00078 0.29 +0.4
82,079 + CCNA_00078 0.30 -0.4
82,079 + CCNA_00078 0.30 +1.5
82,087 - CCNA_00078 0.31 -0.2
82,087 - CCNA_00078 0.31 -0.2
82,089 + CCNA_00078 0.31 -0.3
82,089 + CCNA_00078 0.31 +0.5
82,110 - CCNA_00078 0.32 +0.5
82,136 - CCNA_00078 0.34 +0.2
82,150 + CCNA_00078 0.34 -0.2
82,153 - CCNA_00078 0.35 +0.6
82,155 + CCNA_00078 0.35 +0.2
82,185 + CCNA_00078 0.36 -0.6
82,191 + CCNA_00078 0.37 -0.9
82,224 + CCNA_00078 0.39 +1.9
82,224 + CCNA_00078 0.39 -0.3
82,224 + CCNA_00078 0.39 -0.7
82,224 + CCNA_00078 0.39 +0.6
82,224 + CCNA_00078 0.39 -0.3
82,232 - CCNA_00078 0.39 +0.1
82,248 + CCNA_00078 0.40 +0.3
82,256 - CCNA_00078 0.40 +0.7
82,268 + CCNA_00078 0.41 +0.6
82,268 - CCNA_00078 0.41 +0.0
82,291 - CCNA_00078 0.42 -0.3
82,359 + CCNA_00078 0.46 +1.2
82,372 - CCNA_00078 0.47 +0.5
82,378 - CCNA_00078 0.47 +0.3
82,384 - CCNA_00078 0.47 +0.4
82,398 + CCNA_00078 0.48 +0.4
82,398 + CCNA_00078 0.48 +0.3
82,398 + CCNA_00078 0.48 -0.8
82,403 + CCNA_00078 0.48 -0.9
82,410 + CCNA_00078 0.49 +0.5
82,418 + CCNA_00078 0.49 -0.6
82,418 + CCNA_00078 0.49 -0.1
82,426 - CCNA_00078 0.50 +0.2
82,466 - CCNA_00078 0.52 -0.0
82,507 - CCNA_00078 0.54 +0.1
82,509 + CCNA_00078 0.54 -0.3
82,548 + CCNA_00078 0.57 -0.6
82,548 + CCNA_00078 0.57 +0.4
82,548 + CCNA_00078 0.57 -0.4
82,565 + CCNA_00078 0.58 +1.1
82,597 - CCNA_00078 0.59 -0.0
82,617 + CCNA_00078 0.60 -0.6
82,642 + CCNA_00078 0.62 +0.2
82,645 - CCNA_00078 0.62 -0.4
82,677 + CCNA_00078 0.64 -0.3
82,679 - CCNA_00078 0.64 +0.1
82,682 + CCNA_00078 0.64 +0.3
82,687 + CCNA_00078 0.64 -0.1
82,711 - CCNA_00078 0.66 -0.1
82,711 - CCNA_00078 0.66 -1.2
82,718 - CCNA_00078 0.66 +0.7
82,718 - CCNA_00078 0.66 +0.2
82,793 - CCNA_00078 0.70 +1.7
82,802 + CCNA_00078 0.71 -1.6
82,802 + CCNA_00078 0.71 +0.7
82,810 - CCNA_00078 0.71 -0.8
82,810 - CCNA_00078 0.71 -1.4
82,842 - CCNA_00078 0.73 +0.2
82,864 - CCNA_00078 0.74 -0.3
82,996 + CCNA_00078 0.82 +0.4
83,035 + CCNA_00078 0.84 +0.0
83,043 - CCNA_00078 0.84 -0.4
83,043 - CCNA_00078 0.84 -0.0
83,043 - CCNA_00078 0.84 +0.1
83,069 - CCNA_00078 0.86 +0.9
83,072 - CCNA_00078 0.86 +0.3
83,087 + CCNA_00078 0.87 +0.2
83,087 + CCNA_00078 0.87 -1.8
83,122 - CCNA_00078 0.89 +1.2
83,165 - +0.1
83,165 - +0.1
83,165 - -0.0
83,181 + -0.3
83,199 + -0.6
83,220 + +0.2
83,222 + -0.9
83,287 + -0.5
83,287 + -0.3
83,290 - -0.8
83,295 - -1.2
83,295 - +0.4
83,322 - -0.1
83,322 - -0.5
83,333 + -0.0
83,333 + -0.8
83,333 + -0.5
83,338 + -0.1
83,340 - +0.0
83,341 - +0.5
83,341 - +0.5
83,459 + +0.8
83,494 - CCNA_00079 0.17 +0.4
83,494 - CCNA_00079 0.17 +0.5
83,537 + CCNA_00079 0.26 +0.1
83,538 + CCNA_00079 0.26 +0.9
83,630 + CCNA_00079 0.45 -0.0
83,645 + CCNA_00079 0.48 -0.2
83,739 + CCNA_00079 0.68 -0.1
83,768 - CCNA_00079 0.74 -0.6
83,781 + CCNA_00079 0.76 +0.6
83,783 + CCNA_00079 0.77 -0.1
83,838 + CCNA_00079 0.88 -1.2
83,968 - +0.7
84,196 + CCNA_00080 0.17 +0.8
84,196 + CCNA_00080 0.17 -0.3

Or see this region's nucleotide sequence