Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00057

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00055 and CCNA_00056 are separated by 45 nucleotidesCCNA_00056 and CCNA_00057 are separated by 8 nucleotidesCCNA_00057 and CCNA_00058 are separated by 3 nucleotidesCCNA_00058 and CCNA_00059 are separated by 147 nucleotides CCNA_00055: CCNA_00055 - ferric uptake regulation protein, at 58,201 to 58,608 _00055 CCNA_00056: CCNA_00056 - ribosomal-protein-S18-alanine acetyltransferase, at 58,654 to 59,106 _00056 CCNA_00057: CCNA_00057 - glycoprotease family protein, at 59,115 to 59,750 _00057 CCNA_00058: CCNA_00058 - hypothetical protein, at 59,754 to 60,386 _00058 CCNA_00059: CCNA_00059 - oxygen-insensitive NADH nitroreductase, at 60,534 to 61,121 _00059 Position (kb) 59 60Strain fitness (log2 ratio) -1 0 1 2at 58.116 kb on + strandat 58.116 kb on + strandat 58.116 kb on + strandat 58.116 kb on + strandat 58.119 kb on - strandat 58.124 kb on - strandat 58.124 kb on - strandat 58.140 kb on - strandat 58.144 kb on - strandat 58.155 kb on - strandat 58.192 kb on + strandat 58.197 kb on + strandat 58.200 kb on - strandat 58.225 kb on - strandat 58.228 kb on - strandat 58.615 kb on + strandat 58.638 kb on + strandat 58.643 kb on + strandat 58.651 kb on - strandat 58.651 kb on - strandat 58.658 kb on - strandat 58.665 kb on - strandat 58.666 kb on - strandat 58.743 kb on + strand, within CCNA_00056at 58.750 kb on + strand, within CCNA_00056at 58.759 kb on - strand, within CCNA_00056at 58.819 kb on - strand, within CCNA_00056at 58.819 kb on - strand, within CCNA_00056at 58.846 kb on + strand, within CCNA_00056at 58.849 kb on - strand, within CCNA_00056at 58.857 kb on + strand, within CCNA_00056at 58.857 kb on + strand, within CCNA_00056at 58.857 kb on + strand, within CCNA_00056at 58.943 kb on + strand, within CCNA_00056at 58.988 kb on - strand, within CCNA_00056at 58.991 kb on + strand, within CCNA_00056at 59.017 kb on + strand, within CCNA_00056at 59.017 kb on + strand, within CCNA_00056at 59.017 kb on + strand, within CCNA_00056at 59.017 kb on + strand, within CCNA_00056at 59.017 kb on + strand, within CCNA_00056at 59.025 kb on - strand, within CCNA_00056at 59.025 kb on - strand, within CCNA_00056at 59.027 kb on + strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.045 kb on + strand, within CCNA_00056at 59.046 kb on - strand, within CCNA_00056at 59.100 kb on + strandat 59.129 kb on + strandat 59.148 kb on - strandat 59.154 kb on - strandat 59.172 kb on + strandat 59.505 kb on + strand, within CCNA_00057at 59.788 kb on + strandat 59.800 kb on + strandat 59.808 kb on - strandat 59.808 kb on - strandat 59.812 kb on + strandat 59.812 kb on + strandat 59.812 kb on + strandat 59.856 kb on - strand, within CCNA_00058at 59.931 kb on + strand, within CCNA_00058at 59.931 kb on + strand, within CCNA_00058at 59.939 kb on - strand, within CCNA_00058at 59.941 kb on + strand, within CCNA_00058at 59.941 kb on + strand, within CCNA_00058at 59.949 kb on - strand, within CCNA_00058at 59.964 kb on + strand, within CCNA_00058at 59.983 kb on + strand, within CCNA_00058at 59.988 kb on + strand, within CCNA_00058at 60.024 kb on - strand, within CCNA_00058at 60.041 kb on - strand, within CCNA_00058at 60.051 kb on - strand, within CCNA_00058at 60.077 kb on + strand, within CCNA_00058at 60.077 kb on + strand, within CCNA_00058at 60.082 kb on + strand, within CCNA_00058at 60.085 kb on - strand, within CCNA_00058at 60.090 kb on - strand, within CCNA_00058at 60.090 kb on - strand, within CCNA_00058at 60.095 kb on - strand, within CCNA_00058at 60.115 kb on + strand, within CCNA_00058at 60.122 kb on - strand, within CCNA_00058at 60.122 kb on - strand, within CCNA_00058at 60.151 kb on + strand, within CCNA_00058at 60.152 kb on - strand, within CCNA_00058at 60.159 kb on - strand, within CCNA_00058at 60.159 kb on - strand, within CCNA_00058at 60.165 kb on + strand, within CCNA_00058at 60.196 kb on - strand, within CCNA_00058at 60.202 kb on + strand, within CCNA_00058at 60.312 kb on - strand, within CCNA_00058at 60.319 kb on + strand, within CCNA_00058at 60.319 kb on + strand, within CCNA_00058at 60.327 kb on - strandat 60.348 kb on - strandat 60.357 kb on - strandat 60.442 kb on + strandat 60.449 kb on + strandat 60.457 kb on - strandat 60.471 kb on + strandat 60.479 kb on - strandat 60.561 kb on + strandat 60.651 kb on + strand, within CCNA_00059at 60.683 kb on - strand, within CCNA_00059

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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58,116 + -0.5
58,116 + -0.4
58,116 + +1.2
58,116 + +0.1
58,119 - -0.4
58,124 - +0.4
58,124 - +0.4
58,140 - +1.4
58,144 - -0.2
58,155 - +0.8
58,192 + +0.0
58,197 + +0.0
58,200 - +1.2
58,225 - +0.4
58,228 - -0.2
58,615 + +0.5
58,638 + +0.4
58,643 + +0.4
58,651 - +0.6
58,651 - +0.3
58,658 - -0.3
58,665 - +0.8
58,666 - +0.5
58,743 + CCNA_00056 0.20 -0.4
58,750 + CCNA_00056 0.21 -0.4
58,759 - CCNA_00056 0.23 +2.2
58,819 - CCNA_00056 0.36 +0.3
58,819 - CCNA_00056 0.36 -0.5
58,846 + CCNA_00056 0.42 -0.5
58,849 - CCNA_00056 0.43 -0.2
58,857 + CCNA_00056 0.45 +1.9
58,857 + CCNA_00056 0.45 +1.0
58,857 + CCNA_00056 0.45 +0.1
58,943 + CCNA_00056 0.64 +1.3
58,988 - CCNA_00056 0.74 +1.5
58,991 + CCNA_00056 0.74 -0.2
59,017 + CCNA_00056 0.80 -0.0
59,017 + CCNA_00056 0.80 +0.1
59,017 + CCNA_00056 0.80 +1.4
59,017 + CCNA_00056 0.80 -0.6
59,017 + CCNA_00056 0.80 +1.4
59,025 - CCNA_00056 0.82 +0.5
59,025 - CCNA_00056 0.82 +0.8
59,027 + CCNA_00056 0.82 +0.4
59,035 - CCNA_00056 0.84 +0.2
59,035 - CCNA_00056 0.84 +0.6
59,045 + CCNA_00056 0.86 +0.1
59,046 - CCNA_00056 0.87 +0.0
59,100 + +1.3
59,129 + +0.5
59,148 - +0.4
59,154 - -0.7
59,172 + +0.4
59,505 + CCNA_00057 0.61 -0.8
59,788 + -0.4
59,800 + -1.2
59,808 - -0.4
59,808 - +0.6
59,812 + +0.6
59,812 + -0.2
59,812 + +0.0
59,856 - CCNA_00058 0.16 +0.8
59,931 + CCNA_00058 0.28 +2.2
59,931 + CCNA_00058 0.28 -0.4
59,939 - CCNA_00058 0.29 -0.0
59,941 + CCNA_00058 0.30 -0.7
59,941 + CCNA_00058 0.30 -0.1
59,949 - CCNA_00058 0.31 -0.1
59,964 + CCNA_00058 0.33 +0.2
59,983 + CCNA_00058 0.36 +0.7
59,988 + CCNA_00058 0.37 +0.4
60,024 - CCNA_00058 0.43 -1.1
60,041 - CCNA_00058 0.45 +0.0
60,051 - CCNA_00058 0.47 -0.2
60,077 + CCNA_00058 0.51 -0.0
60,077 + CCNA_00058 0.51 -1.0
60,082 + CCNA_00058 0.52 +0.4
60,085 - CCNA_00058 0.52 -0.6
60,090 - CCNA_00058 0.53 +0.2
60,090 - CCNA_00058 0.53 -0.5
60,095 - CCNA_00058 0.54 +0.2
60,115 + CCNA_00058 0.57 +0.1
60,122 - CCNA_00058 0.58 +1.6
60,122 - CCNA_00058 0.58 -0.3
60,151 + CCNA_00058 0.63 -0.0
60,152 - CCNA_00058 0.63 +0.2
60,159 - CCNA_00058 0.64 +0.3
60,159 - CCNA_00058 0.64 +0.0
60,165 + CCNA_00058 0.65 +0.1
60,196 - CCNA_00058 0.70 +0.2
60,202 + CCNA_00058 0.71 -0.5
60,312 - CCNA_00058 0.88 +1.0
60,319 + CCNA_00058 0.89 +1.4
60,319 + CCNA_00058 0.89 +0.3
60,327 - -0.5
60,348 - +0.3
60,357 - +1.1
60,442 + -0.6
60,449 + +0.2
60,457 - +0.3
60,471 + +0.1
60,479 - +0.8
60,561 + +0.0
60,651 + CCNA_00059 0.20 +0.1
60,683 - CCNA_00059 0.25 +0.8

Or see this region's nucleotide sequence