Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18540

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18535 and CA264_18540 are separated by 325 nucleotidesCA264_18540 and CA264_18545 are separated by 203 nucleotides CA264_18535: CA264_18535 - TonB dependent receptor, at 4,311,106 to 4,313,583 _18535 CA264_18540: CA264_18540 - RNA methyltransferase, at 4,313,909 to 4,314,448 _18540 CA264_18545: CA264_18545 - DNA mismatch repair protein MutS, at 4,314,652 to 4,317,285 _18545 Position (kb) 4313 4314 4315Strain fitness (log2 ratio) -2 -1 0 1at 4312.932 kb on - strand, within CA264_18535at 4312.969 kb on + strand, within CA264_18535at 4312.970 kb on - strand, within CA264_18535at 4313.042 kb on - strand, within CA264_18535at 4313.042 kb on - strand, within CA264_18535at 4313.140 kb on + strand, within CA264_18535at 4313.155 kb on - strand, within CA264_18535at 4313.180 kb on + strand, within CA264_18535at 4313.180 kb on + strand, within CA264_18535at 4313.303 kb on + strand, within CA264_18535at 4313.303 kb on + strand, within CA264_18535at 4313.303 kb on + strand, within CA264_18535at 4313.304 kb on - strand, within CA264_18535at 4313.342 kb on + strandat 4313.343 kb on - strandat 4313.343 kb on - strandat 4313.551 kb on + strandat 4313.551 kb on + strandat 4313.552 kb on - strandat 4313.552 kb on - strandat 4313.553 kb on + strandat 4313.553 kb on + strandat 4313.553 kb on + strandat 4313.554 kb on - strandat 4313.554 kb on - strandat 4313.557 kb on + strandat 4313.557 kb on + strandat 4313.558 kb on - strandat 4313.558 kb on - strandat 4313.590 kb on + strandat 4313.618 kb on - strandat 4313.622 kb on + strandat 4313.622 kb on + strandat 4313.720 kb on + strandat 4313.737 kb on - strandat 4313.737 kb on - strandat 4313.737 kb on - strandat 4313.741 kb on - strandat 4313.741 kb on - strandat 4313.741 kb on - strandat 4313.741 kb on - strandat 4313.742 kb on + strandat 4313.743 kb on - strandat 4313.743 kb on - strandat 4313.769 kb on - strandat 4313.974 kb on + strand, within CA264_18540at 4314.082 kb on - strand, within CA264_18540at 4314.121 kb on + strand, within CA264_18540at 4314.122 kb on - strand, within CA264_18540at 4314.122 kb on - strand, within CA264_18540at 4314.251 kb on - strand, within CA264_18540at 4314.432 kb on - strandat 4314.474 kb on - strandat 4314.474 kb on - strandat 4314.550 kb on - strandat 4314.568 kb on + strandat 4314.570 kb on + strandat 4314.571 kb on - strandat 4314.602 kb on + strandat 4314.603 kb on - strandat 4314.639 kb on + strandat 4314.639 kb on + strandat 4314.640 kb on - strandat 4314.640 kb on - strandat 4314.643 kb on - strandat 4314.643 kb on - strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.648 kb on + strandat 4314.649 kb on - strandat 4314.649 kb on - strandat 4314.651 kb on + strandat 4314.652 kb on - strandat 4314.652 kb on - strandat 4314.697 kb on + strandat 4314.810 kb on - strandat 4314.810 kb on - strandat 4314.812 kb on + strandat 4314.883 kb on + strandat 4314.884 kb on - strandat 4314.884 kb on - strandat 4314.977 kb on + strand, within CA264_18545at 4315.042 kb on + strand, within CA264_18545at 4315.043 kb on - strand, within CA264_18545at 4315.240 kb on + strand, within CA264_18545at 4315.241 kb on - strand, within CA264_18545at 4315.241 kb on - strand, within CA264_18545at 4315.263 kb on + strand, within CA264_18545at 4315.369 kb on - strand, within CA264_18545at 4315.369 kb on - strand, within CA264_18545at 4315.443 kb on + strand, within CA264_18545at 4315.443 kb on + strand, within CA264_18545at 4315.443 kb on + strand, within CA264_18545at 4315.444 kb on - strand, within CA264_18545at 4315.447 kb on + strand, within CA264_18545at 4315.447 kb on + strand, within CA264_18545at 4315.448 kb on - strand, within CA264_18545

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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4,312,932 - CA264_18535 0.74 +1.5
4,312,969 + CA264_18535 0.75 +0.5
4,312,970 - CA264_18535 0.75 -0.0
4,313,042 - CA264_18535 0.78 -0.3
4,313,042 - CA264_18535 0.78 +0.2
4,313,140 + CA264_18535 0.82 +0.1
4,313,155 - CA264_18535 0.83 -0.1
4,313,180 + CA264_18535 0.84 -0.5
4,313,180 + CA264_18535 0.84 +0.2
4,313,303 + CA264_18535 0.89 +0.3
4,313,303 + CA264_18535 0.89 -0.8
4,313,303 + CA264_18535 0.89 -0.3
4,313,304 - CA264_18535 0.89 -0.2
4,313,342 + +0.2
4,313,343 - +1.0
4,313,343 - -0.5
4,313,551 + +0.1
4,313,551 + -0.4
4,313,552 - -0.6
4,313,552 - -0.6
4,313,553 + -0.1
4,313,553 + -0.2
4,313,553 + -0.6
4,313,554 - -0.1
4,313,554 - +1.0
4,313,557 + +0.1
4,313,557 + +0.3
4,313,558 - +0.4
4,313,558 - -0.3
4,313,590 + -0.3
4,313,618 - +0.4
4,313,622 + +0.5
4,313,622 + +0.1
4,313,720 + -0.1
4,313,737 - +0.4
4,313,737 - +0.4
4,313,737 - -0.1
4,313,741 - -0.5
4,313,741 - +0.1
4,313,741 - +0.1
4,313,741 - -0.2
4,313,742 + +0.2
4,313,743 - +0.9
4,313,743 - -0.2
4,313,769 - +0.5
4,313,974 + CA264_18540 0.12 -0.1
4,314,082 - CA264_18540 0.32 -1.1
4,314,121 + CA264_18540 0.39 -1.4
4,314,122 - CA264_18540 0.39 -1.2
4,314,122 - CA264_18540 0.39 -0.1
4,314,251 - CA264_18540 0.63 -0.8
4,314,432 - -0.9
4,314,474 - +0.5
4,314,474 - -0.5
4,314,550 - -0.3
4,314,568 + -0.1
4,314,570 + -1.5
4,314,571 - +0.4
4,314,602 + -0.3
4,314,603 - -0.8
4,314,639 + -0.1
4,314,639 + -0.3
4,314,640 - -1.3
4,314,640 - -1.4
4,314,643 - +1.1
4,314,643 - -0.7
4,314,648 + -1.8
4,314,648 + +0.0
4,314,648 + -0.3
4,314,648 + -0.1
4,314,648 + +0.4
4,314,648 + -1.3
4,314,648 + -0.4
4,314,648 + -1.1
4,314,649 - -0.9
4,314,649 - -0.9
4,314,651 + +0.2
4,314,652 - -0.9
4,314,652 - -0.4
4,314,697 + +0.1
4,314,810 - -0.4
4,314,810 - +0.3
4,314,812 + -1.1
4,314,883 + +0.4
4,314,884 - -0.8
4,314,884 - -0.5
4,314,977 + CA264_18545 0.12 -0.1
4,315,042 + CA264_18545 0.15 -0.6
4,315,043 - CA264_18545 0.15 +1.1
4,315,240 + CA264_18545 0.22 +0.0
4,315,241 - CA264_18545 0.22 +0.1
4,315,241 - CA264_18545 0.22 -0.5
4,315,263 + CA264_18545 0.23 +1.0
4,315,369 - CA264_18545 0.27 -1.5
4,315,369 - CA264_18545 0.27 -0.3
4,315,443 + CA264_18545 0.30 -1.4
4,315,443 + CA264_18545 0.30 -0.6
4,315,443 + CA264_18545 0.30 -0.2
4,315,444 - CA264_18545 0.30 -0.0
4,315,447 + CA264_18545 0.30 -0.3
4,315,447 + CA264_18545 0.30 +0.2
4,315,448 - CA264_18545 0.30 +0.1

Or see this region's nucleotide sequence