Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17680

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17675 and CA264_17680 are separated by 142 nucleotidesCA264_17680 and CA264_17685 are separated by 105 nucleotidesCA264_17685 and CA264_17690 are separated by 27 nucleotides CA264_17675: CA264_17675 - Fe-S oxidoreductase, at 4,112,797 to 4,114,170 _17675 CA264_17680: CA264_17680 - CoB--CoM heterodisulfide reductase, at 4,114,313 to 4,115,095 _17680 CA264_17685: CA264_17685 - hypothetical protein, at 4,115,201 to 4,115,683 _17685 CA264_17690: CA264_17690 - hypothetical protein, at 4,115,711 to 4,117,660 _17690 Position (kb) 4114 4115 4116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4113.419 kb on + strand, within CA264_17675at 4113.420 kb on - strand, within CA264_17675at 4113.420 kb on - strand, within CA264_17675at 4113.420 kb on - strand, within CA264_17675at 4113.450 kb on - strand, within CA264_17675at 4113.450 kb on - strand, within CA264_17675at 4113.475 kb on + strand, within CA264_17675at 4113.475 kb on + strand, within CA264_17675at 4113.526 kb on + strand, within CA264_17675at 4113.526 kb on + strand, within CA264_17675at 4113.527 kb on - strand, within CA264_17675at 4113.527 kb on - strand, within CA264_17675at 4113.527 kb on - strand, within CA264_17675at 4113.656 kb on + strand, within CA264_17675at 4113.716 kb on - strand, within CA264_17675at 4113.724 kb on - strand, within CA264_17675at 4113.971 kb on + strand, within CA264_17675at 4114.150 kb on + strandat 4114.150 kb on + strandat 4114.150 kb on + strandat 4114.155 kb on - strandat 4114.155 kb on - strandat 4114.214 kb on - strandat 4114.221 kb on + strandat 4114.280 kb on + strandat 4114.289 kb on - strandat 4114.330 kb on + strandat 4114.392 kb on - strand, within CA264_17680at 4114.392 kb on - strand, within CA264_17680at 4114.401 kb on + strand, within CA264_17680at 4114.423 kb on - strand, within CA264_17680at 4114.531 kb on + strand, within CA264_17680at 4114.597 kb on + strand, within CA264_17680at 4114.676 kb on - strand, within CA264_17680at 4114.751 kb on + strand, within CA264_17680at 4114.752 kb on - strand, within CA264_17680at 4114.775 kb on + strand, within CA264_17680at 4114.776 kb on - strand, within CA264_17680at 4114.837 kb on - strand, within CA264_17680at 4114.990 kb on + strand, within CA264_17680at 4115.093 kb on + strandat 4115.094 kb on - strandat 4115.096 kb on + strandat 4115.141 kb on + strandat 4115.176 kb on - strandat 4115.176 kb on - strandat 4115.178 kb on + strandat 4115.179 kb on - strandat 4115.186 kb on + strandat 4115.187 kb on - strandat 4115.187 kb on - strandat 4115.198 kb on - strandat 4115.206 kb on + strandat 4115.434 kb on + strand, within CA264_17685at 4115.435 kb on - strand, within CA264_17685at 4115.435 kb on - strand, within CA264_17685at 4115.473 kb on + strand, within CA264_17685at 4115.474 kb on - strand, within CA264_17685at 4115.587 kb on + strand, within CA264_17685at 4115.587 kb on + strand, within CA264_17685at 4115.588 kb on - strand, within CA264_17685at 4115.588 kb on - strand, within CA264_17685at 4115.592 kb on + strand, within CA264_17685at 4115.592 kb on + strand, within CA264_17685at 4115.594 kb on + strand, within CA264_17685at 4115.594 kb on + strand, within CA264_17685at 4115.594 kb on + strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.615 kb on - strand, within CA264_17685at 4115.618 kb on + strand, within CA264_17685at 4115.698 kb on - strandat 4115.702 kb on + strandat 4115.702 kb on + strandat 4115.702 kb on + strandat 4115.703 kb on - strandat 4115.810 kb on - strandat 4115.853 kb on - strandat 4115.853 kb on - strandat 4115.863 kb on + strandat 4115.864 kb on - strandat 4115.870 kb on + strandat 4115.874 kb on - strandat 4115.918 kb on + strand, within CA264_17690at 4115.918 kb on + strand, within CA264_17690at 4115.976 kb on - strand, within CA264_17690at 4115.977 kb on + strand, within CA264_17690at 4115.978 kb on - strand, within CA264_17690at 4115.999 kb on + strand, within CA264_17690at 4116.017 kb on + strand, within CA264_17690at 4116.017 kb on + strand, within CA264_17690at 4116.020 kb on + strand, within CA264_17690at 4116.026 kb on + strand, within CA264_17690at 4116.026 kb on + strand, within CA264_17690at 4116.027 kb on - strand, within CA264_17690at 4116.027 kb on - strandat 4116.027 kb on - strand, within CA264_17690at 4116.087 kb on - strand, within CA264_17690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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4,113,419 + CA264_17675 0.45 -3.2
4,113,420 - CA264_17675 0.45 -0.5
4,113,420 - CA264_17675 0.45 -1.5
4,113,420 - CA264_17675 0.45 -2.4
4,113,450 - CA264_17675 0.48 -1.5
4,113,450 - CA264_17675 0.48 -1.9
4,113,475 + CA264_17675 0.49 -1.6
4,113,475 + CA264_17675 0.49 -0.3
4,113,526 + CA264_17675 0.53 -2.3
4,113,526 + CA264_17675 0.53 -4.3
4,113,527 - CA264_17675 0.53 -0.3
4,113,527 - CA264_17675 0.53 -2.8
4,113,527 - CA264_17675 0.53 -1.8
4,113,656 + CA264_17675 0.63 -0.4
4,113,716 - CA264_17675 0.67 -2.9
4,113,724 - CA264_17675 0.67 -1.2
4,113,971 + CA264_17675 0.85 -2.0
4,114,150 + -2.9
4,114,150 + -1.7
4,114,150 + -0.6
4,114,155 - -2.9
4,114,155 - -2.4
4,114,214 - +1.1
4,114,221 + +0.4
4,114,280 + -2.1
4,114,289 - -1.6
4,114,330 + -2.0
4,114,392 - CA264_17680 0.10 -1.1
4,114,392 - CA264_17680 0.10 -1.8
4,114,401 + CA264_17680 0.11 -1.9
4,114,423 - CA264_17680 0.14 -0.7
4,114,531 + CA264_17680 0.28 -1.9
4,114,597 + CA264_17680 0.36 -3.1
4,114,676 - CA264_17680 0.46 -2.0
4,114,751 + CA264_17680 0.56 -1.3
4,114,752 - CA264_17680 0.56 -2.1
4,114,775 + CA264_17680 0.59 -0.3
4,114,776 - CA264_17680 0.59 -2.6
4,114,837 - CA264_17680 0.67 -2.5
4,114,990 + CA264_17680 0.86 -1.2
4,115,093 + -1.8
4,115,094 - -0.3
4,115,096 + -2.0
4,115,141 + +0.0
4,115,176 - -1.1
4,115,176 - -1.0
4,115,178 + -1.2
4,115,179 - -0.9
4,115,186 + -0.8
4,115,187 - -0.9
4,115,187 - -0.9
4,115,198 - -0.4
4,115,206 + +0.6
4,115,434 + CA264_17685 0.48 -0.3
4,115,435 - CA264_17685 0.48 -0.7
4,115,435 - CA264_17685 0.48 +0.0
4,115,473 + CA264_17685 0.56 +0.8
4,115,474 - CA264_17685 0.57 +0.3
4,115,587 + CA264_17685 0.80 -0.4
4,115,587 + CA264_17685 0.80 +0.9
4,115,588 - CA264_17685 0.80 +1.0
4,115,588 - CA264_17685 0.80 +0.1
4,115,592 + CA264_17685 0.81 -0.1
4,115,592 + CA264_17685 0.81 -0.4
4,115,594 + CA264_17685 0.81 +0.8
4,115,594 + CA264_17685 0.81 +1.5
4,115,594 + CA264_17685 0.81 -0.2
4,115,595 - CA264_17685 0.82 +0.9
4,115,595 - CA264_17685 0.82 -0.7
4,115,595 - CA264_17685 0.82 +0.3
4,115,595 - CA264_17685 0.82 -0.0
4,115,595 - CA264_17685 0.82 +0.6
4,115,615 - CA264_17685 0.86 -0.0
4,115,618 + CA264_17685 0.86 +0.5
4,115,698 - -0.2
4,115,702 + -0.8
4,115,702 + -0.1
4,115,702 + +0.1
4,115,703 - -0.1
4,115,810 - -0.0
4,115,853 - +0.2
4,115,853 - -1.5
4,115,863 + +1.1
4,115,864 - -1.4
4,115,870 + +2.0
4,115,874 - -0.4
4,115,918 + CA264_17690 0.11 +0.1
4,115,918 + CA264_17690 0.11 -1.3
4,115,976 - CA264_17690 0.14 +0.1
4,115,977 + CA264_17690 0.14 -0.5
4,115,978 - CA264_17690 0.14 -0.2
4,115,999 + CA264_17690 0.15 -1.3
4,116,017 + CA264_17690 0.16 -0.6
4,116,017 + CA264_17690 0.16 -0.5
4,116,020 + CA264_17690 0.16 -0.2
4,116,026 + CA264_17690 0.16 +1.5
4,116,026 + CA264_17690 0.16 +0.2
4,116,027 - CA264_17690 0.16 -0.2
4,116,027 - +0.7
4,116,027 - CA264_17690 0.16 +0.4
4,116,087 - CA264_17690 0.19 -0.4

Or see this region's nucleotide sequence