Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13355

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13345 and CA264_13350 are separated by 101 nucleotidesCA264_13350 and CA264_13355 are separated by 75 nucleotidesCA264_13355 and CA264_13360 overlap by 8 nucleotides CA264_13345: CA264_13345 - iron-regulated protein, at 3,112,933 to 3,113,814 _13345 CA264_13350: CA264_13350 - hypothetical protein, at 3,113,916 to 3,114,578 _13350 CA264_13355: CA264_13355 - ABC transporter permease, at 3,114,654 to 3,116,009 _13355 CA264_13360: CA264_13360 - ABC transporter ATP-binding protein, at 3,116,002 to 3,116,913 _13360 Position (kb) 3114 3115 3116 3117Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3113.699 kb on + strand, within CA264_13345at 3113.704 kb on + strand, within CA264_13345at 3113.705 kb on - strand, within CA264_13345at 3113.819 kb on + strandat 3113.820 kb on - strandat 3113.842 kb on + strandat 3113.843 kb on - strandat 3113.886 kb on + strandat 3113.886 kb on + strandat 3113.889 kb on - strandat 3113.889 kb on - strandat 3113.889 kb on - strandat 3113.893 kb on + strandat 3113.894 kb on - strandat 3113.917 kb on + strandat 3113.926 kb on - strandat 3113.926 kb on - strandat 3113.926 kb on - strandat 3114.039 kb on + strand, within CA264_13350at 3114.039 kb on + strand, within CA264_13350at 3114.083 kb on + strand, within CA264_13350at 3114.084 kb on - strand, within CA264_13350at 3114.085 kb on + strand, within CA264_13350at 3114.085 kb on + strand, within CA264_13350at 3114.086 kb on - strand, within CA264_13350at 3114.225 kb on - strand, within CA264_13350at 3114.256 kb on - strand, within CA264_13350at 3114.415 kb on - strand, within CA264_13350at 3114.443 kb on - strandat 3114.479 kb on + strand, within CA264_13350at 3114.496 kb on - strand, within CA264_13350at 3114.501 kb on + strand, within CA264_13350at 3114.502 kb on - strand, within CA264_13350at 3114.567 kb on + strandat 3114.568 kb on - strandat 3114.655 kb on + strandat 3114.656 kb on - strandat 3114.656 kb on - strandat 3114.692 kb on - strandat 3114.692 kb on - strandat 3114.710 kb on - strandat 3114.731 kb on - strandat 3114.858 kb on + strand, within CA264_13355at 3114.858 kb on + strand, within CA264_13355at 3114.920 kb on + strand, within CA264_13355at 3114.920 kb on + strand, within CA264_13355at 3114.921 kb on - strand, within CA264_13355at 3114.932 kb on + strand, within CA264_13355at 3114.999 kb on + strand, within CA264_13355at 3115.000 kb on - strand, within CA264_13355at 3115.059 kb on + strand, within CA264_13355at 3115.281 kb on + strand, within CA264_13355at 3115.386 kb on - strand, within CA264_13355at 3115.386 kb on - strand, within CA264_13355at 3115.450 kb on + strand, within CA264_13355at 3115.450 kb on + strand, within CA264_13355at 3115.480 kb on - strand, within CA264_13355at 3115.487 kb on + strand, within CA264_13355at 3115.487 kb on + strand, within CA264_13355at 3115.488 kb on - strand, within CA264_13355at 3115.557 kb on + strand, within CA264_13355at 3115.653 kb on + strand, within CA264_13355at 3115.654 kb on - strand, within CA264_13355at 3115.676 kb on - strand, within CA264_13355at 3115.720 kb on + strand, within CA264_13355at 3115.999 kb on - strandat 3115.999 kb on - strandat 3116.003 kb on + strandat 3116.023 kb on + strandat 3116.050 kb on - strandat 3116.083 kb on + strandat 3116.234 kb on + strand, within CA264_13360at 3116.249 kb on + strand, within CA264_13360at 3116.260 kb on + strand, within CA264_13360at 3116.261 kb on - strand, within CA264_13360at 3116.290 kb on - strand, within CA264_13360at 3116.290 kb on - strand, within CA264_13360at 3116.316 kb on + strand, within CA264_13360at 3116.362 kb on - strand, within CA264_13360at 3116.566 kb on + strand, within CA264_13360at 3116.660 kb on + strand, within CA264_13360at 3116.661 kb on - strand, within CA264_13360at 3116.917 kb on + strandat 3116.917 kb on + strandat 3116.940 kb on + strandat 3116.940 kb on + strandat 3116.941 kb on - strandat 3116.942 kb on + strandat 3116.944 kb on + strandat 3116.944 kb on + strandat 3116.945 kb on - strandat 3116.959 kb on - strandat 3116.959 kb on - strandat 3116.978 kb on - strandat 3116.989 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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3,113,699 + CA264_13345 0.87 +0.9
3,113,704 + CA264_13345 0.87 -0.4
3,113,705 - CA264_13345 0.88 +0.8
3,113,819 + +0.2
3,113,820 - +0.3
3,113,842 + -0.3
3,113,843 - +1.3
3,113,886 + +0.6
3,113,886 + +1.1
3,113,889 - -0.1
3,113,889 - +0.5
3,113,889 - -0.1
3,113,893 + +0.1
3,113,894 - -0.6
3,113,917 + +0.8
3,113,926 - +0.2
3,113,926 - -0.6
3,113,926 - +0.2
3,114,039 + CA264_13350 0.19 +0.2
3,114,039 + CA264_13350 0.19 +0.7
3,114,083 + CA264_13350 0.25 -0.0
3,114,084 - CA264_13350 0.25 -0.5
3,114,085 + CA264_13350 0.25 +0.3
3,114,085 + CA264_13350 0.25 +0.2
3,114,086 - CA264_13350 0.26 -0.4
3,114,225 - CA264_13350 0.47 -0.3
3,114,256 - CA264_13350 0.51 +0.1
3,114,415 - CA264_13350 0.75 -0.6
3,114,443 - -0.0
3,114,479 + CA264_13350 0.85 +0.4
3,114,496 - CA264_13350 0.87 -1.0
3,114,501 + CA264_13350 0.88 +0.6
3,114,502 - CA264_13350 0.88 +0.2
3,114,567 + +1.0
3,114,568 - -0.9
3,114,655 + -1.3
3,114,656 - +0.2
3,114,656 - -0.0
3,114,692 - +0.2
3,114,692 - -0.9
3,114,710 - +0.4
3,114,731 - +0.1
3,114,858 + CA264_13355 0.15 -0.3
3,114,858 + CA264_13355 0.15 -0.1
3,114,920 + CA264_13355 0.20 -0.6
3,114,920 + CA264_13355 0.20 -0.4
3,114,921 - CA264_13355 0.20 +0.3
3,114,932 + CA264_13355 0.21 -0.5
3,114,999 + CA264_13355 0.25 +0.2
3,115,000 - CA264_13355 0.26 -1.5
3,115,059 + CA264_13355 0.30 -0.7
3,115,281 + CA264_13355 0.46 -0.1
3,115,386 - CA264_13355 0.54 -0.1
3,115,386 - CA264_13355 0.54 +1.1
3,115,450 + CA264_13355 0.59 -0.7
3,115,450 + CA264_13355 0.59 +0.1
3,115,480 - CA264_13355 0.61 +0.4
3,115,487 + CA264_13355 0.61 +0.1
3,115,487 + CA264_13355 0.61 -1.6
3,115,488 - CA264_13355 0.62 +0.2
3,115,557 + CA264_13355 0.67 +0.2
3,115,653 + CA264_13355 0.74 -0.6
3,115,654 - CA264_13355 0.74 -0.6
3,115,676 - CA264_13355 0.75 +3.0
3,115,720 + CA264_13355 0.79 +0.4
3,115,999 - +1.3
3,115,999 - -0.2
3,116,003 + +0.2
3,116,023 + -0.2
3,116,050 - -0.1
3,116,083 + -1.5
3,116,234 + CA264_13360 0.25 -1.3
3,116,249 + CA264_13360 0.27 +0.9
3,116,260 + CA264_13360 0.28 -0.5
3,116,261 - CA264_13360 0.28 +0.5
3,116,290 - CA264_13360 0.32 +0.4
3,116,290 - CA264_13360 0.32 -2.0
3,116,316 + CA264_13360 0.34 +1.4
3,116,362 - CA264_13360 0.39 +0.5
3,116,566 + CA264_13360 0.62 +0.0
3,116,660 + CA264_13360 0.72 -0.2
3,116,661 - CA264_13360 0.72 -0.0
3,116,917 + -0.5
3,116,917 + +0.2
3,116,940 + +0.4
3,116,940 + -0.6
3,116,941 - -0.2
3,116,942 + +0.7
3,116,944 + -0.6
3,116,944 + -0.1
3,116,945 - -0.2
3,116,959 - +0.0
3,116,959 - -2.3
3,116,978 - -0.4
3,116,989 + +0.0

Or see this region's nucleotide sequence