Experiment: m.b. Paraquat dichloride 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10910 and CA264_10915 are separated by 21 nucleotides CA264_10915 and CA264_10920 are separated by 234 nucleotides
CA264_10910: CA264_10910 - phytoene dehydrogenase, at 2,519,133 to 2,520,629
_10910
CA264_10915: CA264_10915 - RNA polymerase subunit sigma, at 2,520,651 to 2,521,166
_10915
CA264_10920: CA264_10920 - helix-turn-helix-type transcriptional regulator, at 2,521,401 to 2,522,276
_10920
Position (kb)
2520
2521
2522 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2519.695 kb on + strand, within CA264_10910 at 2519.696 kb on - strand, within CA264_10910 at 2519.900 kb on - strand, within CA264_10910 at 2520.001 kb on + strand, within CA264_10910 at 2520.001 kb on + strand, within CA264_10910 at 2520.002 kb on - strand, within CA264_10910 at 2520.016 kb on + strand, within CA264_10910 at 2520.016 kb on + strand, within CA264_10910 at 2520.016 kb on + strand, within CA264_10910 at 2520.016 kb on + strand, within CA264_10910 at 2520.078 kb on + strand, within CA264_10910 at 2520.110 kb on + strand, within CA264_10910 at 2520.174 kb on - strand, within CA264_10910 at 2520.174 kb on - strand, within CA264_10910 at 2520.200 kb on + strand, within CA264_10910 at 2520.215 kb on + strand, within CA264_10910 at 2520.230 kb on - strand, within CA264_10910 at 2520.235 kb on + strand, within CA264_10910 at 2520.235 kb on + strand, within CA264_10910 at 2520.236 kb on - strand, within CA264_10910 at 2520.236 kb on - strand, within CA264_10910 at 2520.364 kb on + strand, within CA264_10910 at 2520.365 kb on - strand, within CA264_10910 at 2520.391 kb on + strand, within CA264_10910 at 2520.423 kb on - strand, within CA264_10910 at 2520.427 kb on + strand, within CA264_10910 at 2520.428 kb on - strand, within CA264_10910 at 2520.475 kb on + strand, within CA264_10910 at 2520.480 kb on - strand at 2520.480 kb on - strand at 2520.480 kb on - strand at 2520.551 kb on - strand at 2520.613 kb on - strand at 2520.613 kb on - strand at 2520.629 kb on + strand at 2520.629 kb on + strand at 2520.629 kb on + strand at 2520.630 kb on - strand at 2520.634 kb on - strand at 2520.670 kb on - strand at 2520.708 kb on + strand, within CA264_10915 at 2520.735 kb on + strand, within CA264_10915 at 2520.735 kb on + strand, within CA264_10915 at 2520.735 kb on + strand, within CA264_10915 at 2520.735 kb on + strand, within CA264_10915 at 2520.764 kb on - strand, within CA264_10915 at 2520.778 kb on + strand, within CA264_10915 at 2520.779 kb on - strand, within CA264_10915 at 2520.779 kb on - strand, within CA264_10915 at 2520.779 kb on - strand, within CA264_10915 at 2520.781 kb on + strand, within CA264_10915 at 2520.781 kb on + strand, within CA264_10915 at 2520.782 kb on - strand, within CA264_10915 at 2520.782 kb on - strand, within CA264_10915 at 2520.782 kb on - strand, within CA264_10915 at 2520.894 kb on - strand, within CA264_10915 at 2520.897 kb on - strand, within CA264_10915 at 2520.901 kb on + strand, within CA264_10915 at 2520.951 kb on - strand, within CA264_10915 at 2520.951 kb on - strand, within CA264_10915 at 2520.955 kb on + strand, within CA264_10915 at 2520.956 kb on - strand, within CA264_10915 at 2520.956 kb on - strand, within CA264_10915 at 2520.959 kb on + strand, within CA264_10915 at 2520.960 kb on - strand, within CA264_10915 at 2520.960 kb on - strand, within CA264_10915 at 2520.962 kb on + strand, within CA264_10915 at 2520.963 kb on - strand, within CA264_10915 at 2521.095 kb on + strand, within CA264_10915 at 2521.182 kb on - strand at 2521.188 kb on - strand at 2521.189 kb on + strand at 2521.189 kb on + strand at 2521.190 kb on - strand at 2521.407 kb on - strand at 2521.492 kb on + strand, within CA264_10920 at 2521.493 kb on - strand, within CA264_10920 at 2521.493 kb on - strand, within CA264_10920 at 2521.498 kb on + strand, within CA264_10920 at 2521.499 kb on - strand, within CA264_10920 at 2521.499 kb on - strand, within CA264_10920 at 2521.502 kb on + strand, within CA264_10920 at 2521.502 kb on + strand, within CA264_10920 at 2521.503 kb on - strand, within CA264_10920 at 2521.540 kb on + strand, within CA264_10920 at 2521.590 kb on - strand, within CA264_10920 at 2521.590 kb on - strand, within CA264_10920 at 2521.687 kb on + strand, within CA264_10920 at 2521.687 kb on + strand, within CA264_10920 at 2521.688 kb on - strand, within CA264_10920 at 2521.688 kb on - strand, within CA264_10920 at 2521.688 kb on - strand, within CA264_10920 at 2521.736 kb on - strand, within CA264_10920 at 2521.744 kb on + strand, within CA264_10920 at 2521.745 kb on - strand, within CA264_10920 at 2521.822 kb on - strand, within CA264_10920 at 2521.844 kb on + strand, within CA264_10920 at 2522.034 kb on + strand, within CA264_10920 at 2522.085 kb on - strand, within CA264_10920 at 2522.096 kb on - strand, within CA264_10920 at 2522.120 kb on + strand, within CA264_10920 at 2522.120 kb on + strand, within CA264_10920 at 2522.121 kb on - strand, within CA264_10920 at 2522.155 kb on + strand, within CA264_10920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml remove 2,519,695 + CA264_10910 0.38 +1.3 2,519,696 - CA264_10910 0.38 -0.0 2,519,900 - CA264_10910 0.51 +0.1 2,520,001 + CA264_10910 0.58 -0.1 2,520,001 + CA264_10910 0.58 +1.1 2,520,002 - CA264_10910 0.58 +0.8 2,520,016 + CA264_10910 0.59 +1.1 2,520,016 + CA264_10910 0.59 +1.6 2,520,016 + CA264_10910 0.59 +0.2 2,520,016 + CA264_10910 0.59 +0.6 2,520,078 + CA264_10910 0.63 +0.9 2,520,110 + CA264_10910 0.65 +0.4 2,520,174 - CA264_10910 0.70 +0.5 2,520,174 - CA264_10910 0.70 -0.1 2,520,200 + CA264_10910 0.71 +0.2 2,520,215 + CA264_10910 0.72 +0.4 2,520,230 - CA264_10910 0.73 +0.7 2,520,235 + CA264_10910 0.74 +1.4 2,520,235 + CA264_10910 0.74 -0.4 2,520,236 - CA264_10910 0.74 -0.1 2,520,236 - CA264_10910 0.74 +0.5 2,520,364 + CA264_10910 0.82 -0.1 2,520,365 - CA264_10910 0.82 +1.4 2,520,391 + CA264_10910 0.84 +0.5 2,520,423 - CA264_10910 0.86 +0.0 2,520,427 + CA264_10910 0.86 +0.6 2,520,428 - CA264_10910 0.87 +0.2 2,520,475 + CA264_10910 0.90 +0.2 2,520,480 - +0.3 2,520,480 - +0.2 2,520,480 - +1.0 2,520,551 - -0.5 2,520,613 - +0.0 2,520,613 - +0.5 2,520,629 + +0.0 2,520,629 + +0.5 2,520,629 + -0.2 2,520,630 - +0.5 2,520,634 - +0.3 2,520,670 - -1.9 2,520,708 + CA264_10915 0.11 -3.0 2,520,735 + CA264_10915 0.16 -2.0 2,520,735 + CA264_10915 0.16 -0.1 2,520,735 + CA264_10915 0.16 -1.0 2,520,735 + CA264_10915 0.16 +0.2 2,520,764 - CA264_10915 0.22 +2.5 2,520,778 + CA264_10915 0.25 -1.7 2,520,779 - CA264_10915 0.25 -1.4 2,520,779 - CA264_10915 0.25 -1.1 2,520,779 - CA264_10915 0.25 -2.8 2,520,781 + CA264_10915 0.25 -0.7 2,520,781 + CA264_10915 0.25 -1.6 2,520,782 - CA264_10915 0.25 +0.2 2,520,782 - CA264_10915 0.25 -1.2 2,520,782 - CA264_10915 0.25 -1.7 2,520,894 - CA264_10915 0.47 -1.3 2,520,897 - CA264_10915 0.48 -2.0 2,520,901 + CA264_10915 0.48 -1.5 2,520,951 - CA264_10915 0.58 -1.8 2,520,951 - CA264_10915 0.58 -2.8 2,520,955 + CA264_10915 0.59 -2.0 2,520,956 - CA264_10915 0.59 +0.9 2,520,956 - CA264_10915 0.59 -1.7 2,520,959 + CA264_10915 0.60 -1.3 2,520,960 - CA264_10915 0.60 -0.9 2,520,960 - CA264_10915 0.60 -0.6 2,520,962 + CA264_10915 0.60 -1.9 2,520,963 - CA264_10915 0.60 -2.4 2,521,095 + CA264_10915 0.86 -2.0 2,521,182 - +0.8 2,521,188 - -0.1 2,521,189 + -0.5 2,521,189 + -0.8 2,521,190 - +0.3 2,521,407 - -1.4 2,521,492 + CA264_10920 0.10 +1.9 2,521,493 - CA264_10920 0.11 +1.1 2,521,493 - CA264_10920 0.11 +1.4 2,521,498 + CA264_10920 0.11 +1.4 2,521,499 - CA264_10920 0.11 +1.5 2,521,499 - CA264_10920 0.11 +2.6 2,521,502 + CA264_10920 0.12 +1.1 2,521,502 + CA264_10920 0.12 +0.2 2,521,503 - CA264_10920 0.12 +1.5 2,521,540 + CA264_10920 0.16 +1.2 2,521,590 - CA264_10920 0.22 +0.2 2,521,590 - CA264_10920 0.22 +1.2 2,521,687 + CA264_10920 0.33 +1.3 2,521,687 + CA264_10920 0.33 +1.7 2,521,688 - CA264_10920 0.33 +0.5 2,521,688 - CA264_10920 0.33 +1.2 2,521,688 - CA264_10920 0.33 +0.4 2,521,736 - CA264_10920 0.38 +1.3 2,521,744 + CA264_10920 0.39 +0.8 2,521,745 - CA264_10920 0.39 -0.1 2,521,822 - CA264_10920 0.48 +0.5 2,521,844 + CA264_10920 0.51 +1.6 2,522,034 + CA264_10920 0.72 +1.5 2,522,085 - CA264_10920 0.78 +1.7 2,522,096 - CA264_10920 0.79 +1.3 2,522,120 + CA264_10920 0.82 +1.2 2,522,120 + CA264_10920 0.82 +1.2 2,522,121 - CA264_10920 0.82 +1.1 2,522,155 + CA264_10920 0.86 +1.4
Or see this region's nucleotide sequence