Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09275

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09265 and CA264_09270 are separated by 15 nucleotidesCA264_09270 and CA264_09275 are separated by 185 nucleotidesCA264_09275 and CA264_09280 are separated by 174 nucleotides CA264_09265: CA264_09265 - XRE family transcriptional regulator, at 2,167,853 to 2,169,328 _09265 CA264_09270: CA264_09270 - tRNA-specific adenosine deaminase, at 2,169,344 to 2,169,781 _09270 CA264_09275: CA264_09275 - epimerase, at 2,169,967 to 2,171,439 _09275 CA264_09280: CA264_09280 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 2,171,614 to 2,172,561 _09280 Position (kb) 2169 2170 2171 2172Strain fitness (log2 ratio) -1 0 1 2at 2169.051 kb on - strand, within CA264_09265at 2169.072 kb on - strand, within CA264_09265at 2169.116 kb on - strand, within CA264_09265at 2169.187 kb on + strandat 2169.232 kb on - strandat 2169.265 kb on - strandat 2169.265 kb on - strandat 2169.265 kb on - strandat 2169.388 kb on + strand, within CA264_09270at 2169.388 kb on + strand, within CA264_09270at 2169.564 kb on + strand, within CA264_09270at 2169.735 kb on + strand, within CA264_09270at 2169.808 kb on - strandat 2169.809 kb on + strandat 2169.809 kb on + strandat 2169.810 kb on - strandat 2169.810 kb on - strandat 2169.813 kb on - strandat 2169.858 kb on - strandat 2169.871 kb on + strandat 2169.872 kb on - strandat 2169.895 kb on + strandat 2169.899 kb on + strandat 2169.900 kb on - strandat 2169.929 kb on - strandat 2169.929 kb on - strandat 2169.952 kb on - strandat 2169.956 kb on + strandat 2169.956 kb on + strandat 2169.966 kb on + strandat 2169.967 kb on - strandat 2169.974 kb on + strandat 2169.974 kb on + strandat 2169.975 kb on - strandat 2169.997 kb on + strandat 2170.046 kb on + strandat 2170.046 kb on + strandat 2170.106 kb on + strandat 2170.107 kb on - strandat 2170.107 kb on - strandat 2170.115 kb on + strand, within CA264_09275at 2170.116 kb on - strand, within CA264_09275at 2170.116 kb on - strand, within CA264_09275at 2170.127 kb on + strand, within CA264_09275at 2170.127 kb on + strand, within CA264_09275at 2170.158 kb on + strand, within CA264_09275at 2170.158 kb on + strand, within CA264_09275at 2170.159 kb on - strand, within CA264_09275at 2170.159 kb on - strand, within CA264_09275at 2170.159 kb on - strand, within CA264_09275at 2170.164 kb on + strand, within CA264_09275at 2170.164 kb on + strand, within CA264_09275at 2170.164 kb on + strand, within CA264_09275at 2170.165 kb on - strand, within CA264_09275at 2170.165 kb on - strand, within CA264_09275at 2170.165 kb on - strand, within CA264_09275at 2170.165 kb on - strand, within CA264_09275at 2170.165 kb on - strand, within CA264_09275at 2170.291 kb on + strand, within CA264_09275at 2170.407 kb on + strand, within CA264_09275at 2170.470 kb on + strand, within CA264_09275at 2170.471 kb on - strand, within CA264_09275at 2170.471 kb on - strand, within CA264_09275at 2170.535 kb on - strand, within CA264_09275at 2170.548 kb on - strand, within CA264_09275at 2170.548 kb on - strand, within CA264_09275at 2170.605 kb on + strand, within CA264_09275at 2170.606 kb on - strand, within CA264_09275at 2170.657 kb on + strand, within CA264_09275at 2170.657 kb on + strand, within CA264_09275at 2170.665 kb on - strand, within CA264_09275at 2170.708 kb on + strand, within CA264_09275at 2170.709 kb on - strand, within CA264_09275at 2170.729 kb on + strand, within CA264_09275at 2170.730 kb on - strand, within CA264_09275at 2170.794 kb on - strand, within CA264_09275at 2170.825 kb on + strand, within CA264_09275at 2170.826 kb on - strand, within CA264_09275at 2170.924 kb on + strand, within CA264_09275at 2170.924 kb on + strand, within CA264_09275at 2170.924 kb on + strand, within CA264_09275at 2170.925 kb on - strand, within CA264_09275at 2171.047 kb on + strand, within CA264_09275at 2171.050 kb on - strand, within CA264_09275at 2171.254 kb on - strand, within CA264_09275at 2171.254 kb on - strand, within CA264_09275at 2171.254 kb on - strand, within CA264_09275at 2171.437 kb on + strandat 2171.438 kb on - strandat 2171.459 kb on - strandat 2171.461 kb on - strandat 2171.461 kb on - strandat 2171.466 kb on - strandat 2171.473 kb on + strandat 2171.479 kb on + strandat 2171.491 kb on + strandat 2171.491 kb on + strandat 2171.513 kb on + strandat 2171.578 kb on + strandat 2171.578 kb on + strandat 2171.582 kb on + strandat 2171.597 kb on - strandat 2171.613 kb on - strandat 2171.771 kb on - strand, within CA264_09280at 2171.784 kb on - strand, within CA264_09280at 2171.843 kb on + strand, within CA264_09280at 2171.895 kb on + strand, within CA264_09280at 2171.947 kb on + strand, within CA264_09280at 2171.948 kb on - strand, within CA264_09280at 2172.104 kb on + strand, within CA264_09280at 2172.104 kb on + strand, within CA264_09280at 2172.104 kb on + strand, within CA264_09280at 2172.105 kb on - strand, within CA264_09280at 2172.208 kb on + strand, within CA264_09280at 2172.225 kb on + strand, within CA264_09280at 2172.284 kb on - strand, within CA264_09280

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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2,169,051 - CA264_09265 0.81 +0.8
2,169,072 - CA264_09265 0.83 +0.7
2,169,116 - CA264_09265 0.86 +0.1
2,169,187 + -0.1
2,169,232 - +0.8
2,169,265 - +1.8
2,169,265 - +0.4
2,169,265 - +0.9
2,169,388 + CA264_09270 0.10 +0.0
2,169,388 + CA264_09270 0.10 -0.1
2,169,564 + CA264_09270 0.50 +1.1
2,169,735 + CA264_09270 0.89 +0.4
2,169,808 - +0.3
2,169,809 + -0.3
2,169,809 + -0.0
2,169,810 - +0.3
2,169,810 - -0.1
2,169,813 - -0.0
2,169,858 - -0.3
2,169,871 + -0.0
2,169,872 - +0.0
2,169,895 + +0.1
2,169,899 + +0.2
2,169,900 - +0.3
2,169,929 - +0.0
2,169,929 - +0.6
2,169,952 - +0.8
2,169,956 + +0.4
2,169,956 + -0.0
2,169,966 + +0.1
2,169,967 - -0.2
2,169,974 + +0.5
2,169,974 + +0.2
2,169,975 - +0.2
2,169,997 + +0.3
2,170,046 + +0.2
2,170,046 + +0.0
2,170,106 + +0.6
2,170,107 - -0.3
2,170,107 - -0.6
2,170,115 + CA264_09275 0.10 -1.6
2,170,116 - CA264_09275 0.10 -0.1
2,170,116 - CA264_09275 0.10 -0.6
2,170,127 + CA264_09275 0.11 +0.2
2,170,127 + CA264_09275 0.11 +0.6
2,170,158 + CA264_09275 0.13 +0.6
2,170,158 + CA264_09275 0.13 +0.7
2,170,159 - CA264_09275 0.13 +1.4
2,170,159 - CA264_09275 0.13 +0.7
2,170,159 - CA264_09275 0.13 +2.2
2,170,164 + CA264_09275 0.13 -0.3
2,170,164 + CA264_09275 0.13 -0.3
2,170,164 + CA264_09275 0.13 +0.2
2,170,165 - CA264_09275 0.13 -0.8
2,170,165 - CA264_09275 0.13 +0.0
2,170,165 - CA264_09275 0.13 +0.1
2,170,165 - CA264_09275 0.13 +0.2
2,170,165 - CA264_09275 0.13 +0.1
2,170,291 + CA264_09275 0.22 +1.1
2,170,407 + CA264_09275 0.30 -0.8
2,170,470 + CA264_09275 0.34 -0.8
2,170,471 - CA264_09275 0.34 +0.2
2,170,471 - CA264_09275 0.34 +0.9
2,170,535 - CA264_09275 0.39 -0.1
2,170,548 - CA264_09275 0.39 -1.2
2,170,548 - CA264_09275 0.39 +0.1
2,170,605 + CA264_09275 0.43 +0.1
2,170,606 - CA264_09275 0.43 +0.2
2,170,657 + CA264_09275 0.47 +0.2
2,170,657 + CA264_09275 0.47 -0.0
2,170,665 - CA264_09275 0.47 +0.4
2,170,708 + CA264_09275 0.50 +0.1
2,170,709 - CA264_09275 0.50 +0.1
2,170,729 + CA264_09275 0.52 -0.3
2,170,730 - CA264_09275 0.52 -0.0
2,170,794 - CA264_09275 0.56 +0.1
2,170,825 + CA264_09275 0.58 -0.4
2,170,826 - CA264_09275 0.58 +0.8
2,170,924 + CA264_09275 0.65 +0.1
2,170,924 + CA264_09275 0.65 +0.3
2,170,924 + CA264_09275 0.65 +0.7
2,170,925 - CA264_09275 0.65 +0.9
2,171,047 + CA264_09275 0.73 +0.4
2,171,050 - CA264_09275 0.74 +0.2
2,171,254 - CA264_09275 0.87 -0.2
2,171,254 - CA264_09275 0.87 -0.0
2,171,254 - CA264_09275 0.87 -0.6
2,171,437 + -0.8
2,171,438 - -0.3
2,171,459 - -0.6
2,171,461 - +0.1
2,171,461 - +0.3
2,171,466 - -0.1
2,171,473 + -0.2
2,171,479 + +0.2
2,171,491 + +0.1
2,171,491 + +0.1
2,171,513 + +0.5
2,171,578 + +0.6
2,171,578 + +0.6
2,171,582 + +0.5
2,171,597 - -0.1
2,171,613 - -0.4
2,171,771 - CA264_09280 0.17 -0.5
2,171,784 - CA264_09280 0.18 -0.2
2,171,843 + CA264_09280 0.24 +0.6
2,171,895 + CA264_09280 0.30 +0.2
2,171,947 + CA264_09280 0.35 -0.3
2,171,948 - CA264_09280 0.35 +0.9
2,172,104 + CA264_09280 0.52 +2.2
2,172,104 + CA264_09280 0.52 +0.4
2,172,104 + CA264_09280 0.52 +1.0
2,172,105 - CA264_09280 0.52 -0.2
2,172,208 + CA264_09280 0.63 +0.0
2,172,225 + CA264_09280 0.64 -0.2
2,172,284 - CA264_09280 0.71 +0.1

Or see this region's nucleotide sequence