Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08320

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08315 and CA264_08320 are separated by 412 nucleotidesCA264_08320 and CA264_08325 are separated by 74 nucleotidesCA264_08325 and CA264_08330 are separated by 158 nucleotides CA264_08315: CA264_08315 - PAS sensor protein, at 1,922,114 to 1,923,667 _08315 CA264_08320: CA264_08320 - hypothetical protein, at 1,924,080 to 1,925,078 _08320 CA264_08325: CA264_08325 - SIMPL domain-containing protein, at 1,925,153 to 1,925,869 _08325 CA264_08330: CA264_08330 - hypothetical protein, at 1,926,028 to 1,926,360 _08330 Position (kb) 1924 1925 1926Strain fitness (log2 ratio) -3 -2 -1 0 1at 1923.227 kb on - strand, within CA264_08315at 1923.227 kb on - strand, within CA264_08315at 1923.232 kb on - strand, within CA264_08315at 1923.414 kb on + strand, within CA264_08315at 1923.488 kb on - strand, within CA264_08315at 1923.491 kb on + strand, within CA264_08315at 1923.572 kb on + strandat 1923.573 kb on - strandat 1923.622 kb on - strandat 1923.625 kb on + strandat 1923.625 kb on + strandat 1923.626 kb on - strandat 1923.626 kb on - strandat 1923.633 kb on - strandat 1923.764 kb on + strandat 1923.835 kb on - strandat 1923.913 kb on - strandat 1924.047 kb on + strandat 1924.047 kb on + strandat 1924.047 kb on + strandat 1924.047 kb on + strandat 1924.048 kb on - strandat 1924.048 kb on - strandat 1924.048 kb on - strandat 1924.048 kb on - strandat 1924.063 kb on + strandat 1924.064 kb on - strandat 1924.091 kb on + strandat 1924.097 kb on - strandat 1924.099 kb on - strandat 1924.160 kb on + strandat 1924.161 kb on - strandat 1924.210 kb on - strand, within CA264_08320at 1924.212 kb on - strand, within CA264_08320at 1924.519 kb on - strand, within CA264_08320at 1924.586 kb on - strand, within CA264_08320at 1924.833 kb on + strand, within CA264_08320at 1924.838 kb on + strand, within CA264_08320at 1924.935 kb on + strand, within CA264_08320at 1925.116 kb on + strandat 1925.120 kb on + strandat 1925.121 kb on - strandat 1925.145 kb on + strandat 1925.145 kb on + strandat 1925.236 kb on - strand, within CA264_08325at 1925.254 kb on + strand, within CA264_08325at 1925.255 kb on - strand, within CA264_08325at 1925.263 kb on + strand, within CA264_08325at 1925.266 kb on - strand, within CA264_08325at 1925.310 kb on + strand, within CA264_08325at 1925.311 kb on - strand, within CA264_08325at 1925.327 kb on - strand, within CA264_08325at 1925.403 kb on + strand, within CA264_08325at 1925.404 kb on - strand, within CA264_08325at 1925.404 kb on - strand, within CA264_08325at 1925.536 kb on - strand, within CA264_08325at 1925.575 kb on - strand, within CA264_08325at 1925.724 kb on - strand, within CA264_08325at 1925.840 kb on - strandat 1925.840 kb on - strandat 1925.876 kb on - strandat 1925.887 kb on + strandat 1925.888 kb on - strandat 1925.889 kb on + strandat 1925.889 kb on + strandat 1925.895 kb on - strandat 1925.910 kb on + strandat 1925.910 kb on + strandat 1925.910 kb on + strandat 1925.923 kb on + strandat 1925.923 kb on + strandat 1925.925 kb on + strandat 1925.926 kb on - strandat 1925.927 kb on + strandat 1925.963 kb on - strandat 1926.008 kb on + strandat 1926.008 kb on + strandat 1926.008 kb on + strandat 1926.009 kb on - strandat 1926.009 kb on - strandat 1926.009 kb on - strandat 1926.030 kb on - strandat 1926.041 kb on + strandat 1926.042 kb on - strandat 1926.063 kb on - strand, within CA264_08330

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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1,923,227 - CA264_08315 0.72 +0.6
1,923,227 - CA264_08315 0.72 -0.4
1,923,232 - CA264_08315 0.72 +0.3
1,923,414 + CA264_08315 0.84 +1.2
1,923,488 - CA264_08315 0.88 -0.2
1,923,491 + CA264_08315 0.89 +0.6
1,923,572 + +0.4
1,923,573 - -0.4
1,923,622 - +0.4
1,923,625 + -1.2
1,923,625 + +0.7
1,923,626 - -0.1
1,923,626 - -0.1
1,923,633 - -0.5
1,923,764 + +0.9
1,923,835 - +0.4
1,923,913 - +0.4
1,924,047 + +0.4
1,924,047 + -0.1
1,924,047 + +1.6
1,924,047 + +0.1
1,924,048 - +0.1
1,924,048 - +0.6
1,924,048 - +0.3
1,924,048 - +0.3
1,924,063 + +0.1
1,924,064 - +1.3
1,924,091 + -2.2
1,924,097 - +0.4
1,924,099 - -1.7
1,924,160 + -1.4
1,924,161 - -1.5
1,924,210 - CA264_08320 0.13 -2.3
1,924,212 - CA264_08320 0.13 -0.8
1,924,519 - CA264_08320 0.44 -0.9
1,924,586 - CA264_08320 0.51 -0.4
1,924,833 + CA264_08320 0.75 -1.3
1,924,838 + CA264_08320 0.76 -1.8
1,924,935 + CA264_08320 0.86 -3.7
1,925,116 + +0.0
1,925,120 + +0.5
1,925,121 - +0.0
1,925,145 + +0.6
1,925,145 + +0.1
1,925,236 - CA264_08325 0.12 -0.6
1,925,254 + CA264_08325 0.14 +0.6
1,925,255 - CA264_08325 0.14 -0.7
1,925,263 + CA264_08325 0.15 +0.1
1,925,266 - CA264_08325 0.16 -0.7
1,925,310 + CA264_08325 0.22 +0.6
1,925,311 - CA264_08325 0.22 +0.4
1,925,327 - CA264_08325 0.24 -0.4
1,925,403 + CA264_08325 0.35 +0.5
1,925,404 - CA264_08325 0.35 -1.0
1,925,404 - CA264_08325 0.35 -0.5
1,925,536 - CA264_08325 0.53 -0.5
1,925,575 - CA264_08325 0.59 -0.3
1,925,724 - CA264_08325 0.80 -0.1
1,925,840 - +0.5
1,925,840 - -0.2
1,925,876 - -0.6
1,925,887 + -0.4
1,925,888 - +0.2
1,925,889 + -0.0
1,925,889 + +0.1
1,925,895 - -0.8
1,925,910 + -0.1
1,925,910 + -0.0
1,925,910 + +1.1
1,925,923 + +0.1
1,925,923 + +0.6
1,925,925 + -0.7
1,925,926 - -0.3
1,925,927 + +0.5
1,925,963 - +0.1
1,926,008 + -0.5
1,926,008 + -0.0
1,926,008 + +0.0
1,926,009 - -1.4
1,926,009 - +1.2
1,926,009 - -0.2
1,926,030 - -0.3
1,926,041 + +0.8
1,926,042 - -0.2
1,926,063 - CA264_08330 0.11 +0.7

Or see this region's nucleotide sequence