Strain Fitness in Agrobacterium fabrum C58 around Atu3895

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3893 and Atu3894 are separated by 3 nucleotidesAtu3894 and Atu3895 are separated by 2 nucleotidesAtu3895 and Atu3896 are separated by 14 nucleotides Atu3893: Atu3893 - sugarl ABC transporter permease, at 988,288 to 989,202 Atu3893 Atu3894: Atu3894 - sugar ABC transporter permease, at 989,206 to 990,072 Atu3894 Atu3895: Atu3895 - sugar ABC transporter ATPase, at 990,075 to 991,145 Atu3895 Atu3896: Atu3896 - sugar ABC transporter ATPase, at 991,160 to 992,230 Atu3896 Position (kb) 990 991 992Strain fitness (log2 ratio) -1 0 1at 989.105 kb on + strand, within Atu3893at 989.114 kb on + strandat 989.123 kb on + strandat 989.124 kb on + strandat 989.125 kb on + strandat 989.130 kb on + strandat 989.187 kb on + strandat 989.195 kb on - strandat 989.195 kb on - strandat 989.202 kb on + strandat 989.232 kb on + strandat 989.235 kb on - strandat 989.237 kb on + strandat 989.237 kb on + strandat 989.240 kb on - strandat 989.245 kb on - strandat 989.246 kb on + strandat 989.247 kb on + strandat 989.247 kb on - strandat 989.252 kb on + strandat 989.252 kb on + strandat 989.314 kb on - strand, within Atu3894at 989.314 kb on - strand, within Atu3894at 989.353 kb on - strand, within Atu3894at 989.362 kb on - strand, within Atu3894at 989.362 kb on - strand, within Atu3894at 989.385 kb on + strand, within Atu3894at 989.416 kb on + strand, within Atu3894at 989.477 kb on + strand, within Atu3894at 989.477 kb on + strand, within Atu3894at 989.485 kb on - strand, within Atu3894at 989.577 kb on + strand, within Atu3894at 989.595 kb on - strand, within Atu3894at 989.595 kb on - strand, within Atu3894at 989.644 kb on + strand, within Atu3894at 989.742 kb on - strand, within Atu3894at 989.750 kb on + strand, within Atu3894at 989.892 kb on + strand, within Atu3894at 989.899 kb on + strand, within Atu3894at 989.959 kb on + strand, within Atu3894at 989.959 kb on + strand, within Atu3894at 989.967 kb on - strand, within Atu3894at 989.967 kb on - strand, within Atu3894at 989.967 kb on - strand, within Atu3894at 990.087 kb on - strandat 990.189 kb on + strand, within Atu3895at 990.217 kb on + strand, within Atu3895at 990.330 kb on - strand, within Atu3895at 990.353 kb on + strand, within Atu3895at 990.501 kb on + strand, within Atu3895at 990.531 kb on - strand, within Atu3895at 990.536 kb on - strand, within Atu3895at 990.536 kb on - strand, within Atu3895at 990.536 kb on - strand, within Atu3895at 990.541 kb on + strand, within Atu3895at 990.551 kb on + strand, within Atu3895at 990.553 kb on - strand, within Atu3895at 990.556 kb on + strand, within Atu3895at 990.559 kb on - strand, within Atu3895at 990.592 kb on + strand, within Atu3895at 990.593 kb on - strand, within Atu3895at 990.594 kb on + strand, within Atu3895at 990.600 kb on - strand, within Atu3895at 990.672 kb on - strand, within Atu3895at 990.711 kb on - strand, within Atu3895at 990.741 kb on + strand, within Atu3895at 990.828 kb on - strand, within Atu3895at 990.882 kb on - strand, within Atu3895at 990.890 kb on + strand, within Atu3895at 990.896 kb on - strand, within Atu3895at 990.956 kb on + strand, within Atu3895at 990.964 kb on - strand, within Atu3895at 990.966 kb on + strand, within Atu3895at 991.000 kb on + strand, within Atu3895at 991.018 kb on + strand, within Atu3895at 991.026 kb on - strand, within Atu3895at 991.046 kb on + strandat 991.228 kb on + strandat 991.231 kb on + strandat 991.253 kb on + strandat 991.255 kb on + strandat 991.263 kb on - strandat 991.278 kb on + strand, within Atu3896at 991.351 kb on + strand, within Atu3896at 991.368 kb on + strand, within Atu3896at 991.368 kb on + strand, within Atu3896at 991.415 kb on + strand, within Atu3896at 991.415 kb on + strand, within Atu3896at 991.423 kb on - strand, within Atu3896at 991.430 kb on - strand, within Atu3896at 991.510 kb on + strand, within Atu3896at 991.515 kb on + strand, within Atu3896at 991.515 kb on + strand, within Atu3896at 991.515 kb on - strand, within Atu3896at 991.556 kb on + strand, within Atu3896at 991.587 kb on + strand, within Atu3896at 991.597 kb on - strand, within Atu3896at 991.787 kb on + strand, within Atu3896at 991.817 kb on - strand, within Atu3896at 991.852 kb on + strand, within Atu3896at 991.860 kb on - strand, within Atu3896at 991.871 kb on + strand, within Atu3896at 991.879 kb on - strand, within Atu3896at 991.888 kb on - strand, within Atu3896at 991.955 kb on - strand, within Atu3896at 992.023 kb on - strand, within Atu3896at 992.030 kb on + strand, within Atu3896at 992.038 kb on + strand, within Atu3896at 992.041 kb on - strand, within Atu3896at 992.102 kb on - strand, within Atu3896at 992.139 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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989,105 + Atu3893 0.89 +0.6
989,114 + +0.2
989,123 + +0.3
989,124 + +0.3
989,125 + +0.6
989,130 + +0.7
989,187 + +0.2
989,195 - -1.0
989,195 - +0.1
989,202 + +0.8
989,232 + +0.7
989,235 - +0.9
989,237 + -0.0
989,237 + +0.3
989,240 - -1.4
989,245 - -0.5
989,246 + +0.6
989,247 + +1.3
989,247 - +1.0
989,252 + +0.9
989,252 + +0.6
989,314 - Atu3894 0.12 +1.1
989,314 - Atu3894 0.12 +0.2
989,353 - Atu3894 0.17 +0.5
989,362 - Atu3894 0.18 +0.6
989,362 - Atu3894 0.18 -0.3
989,385 + Atu3894 0.21 +0.5
989,416 + Atu3894 0.24 +0.5
989,477 + Atu3894 0.31 +0.4
989,477 + Atu3894 0.31 -0.5
989,485 - Atu3894 0.32 -0.7
989,577 + Atu3894 0.43 +1.0
989,595 - Atu3894 0.45 +0.0
989,595 - Atu3894 0.45 +0.3
989,644 + Atu3894 0.51 +0.5
989,742 - Atu3894 0.62 +0.3
989,750 + Atu3894 0.63 -0.2
989,892 + Atu3894 0.79 +0.2
989,899 + Atu3894 0.80 -0.1
989,959 + Atu3894 0.87 +0.3
989,959 + Atu3894 0.87 +0.4
989,967 - Atu3894 0.88 +0.8
989,967 - Atu3894 0.88 +0.7
989,967 - Atu3894 0.88 +0.5
990,087 - +0.2
990,189 + Atu3895 0.11 +0.4
990,217 + Atu3895 0.13 +0.5
990,330 - Atu3895 0.24 +0.3
990,353 + Atu3895 0.26 +0.1
990,501 + Atu3895 0.40 +0.5
990,531 - Atu3895 0.43 +1.5
990,536 - Atu3895 0.43 +1.0
990,536 - Atu3895 0.43 +1.0
990,536 - Atu3895 0.43 +0.2
990,541 + Atu3895 0.44 +0.1
990,551 + Atu3895 0.44 +0.2
990,553 - Atu3895 0.45 +0.4
990,556 + Atu3895 0.45 -0.8
990,559 - Atu3895 0.45 +0.1
990,592 + Atu3895 0.48 +0.7
990,593 - Atu3895 0.48 +0.4
990,594 + Atu3895 0.48 -0.1
990,600 - Atu3895 0.49 +0.7
990,672 - Atu3895 0.56 +0.7
990,711 - Atu3895 0.59 -0.3
990,741 + Atu3895 0.62 -0.2
990,828 - Atu3895 0.70 -0.3
990,882 - Atu3895 0.75 -0.0
990,890 + Atu3895 0.76 +0.2
990,896 - Atu3895 0.77 +0.2
990,956 + Atu3895 0.82 +0.6
990,964 - Atu3895 0.83 +0.5
990,966 + Atu3895 0.83 +1.2
991,000 + Atu3895 0.86 +0.3
991,018 + Atu3895 0.88 +0.3
991,026 - Atu3895 0.89 +0.3
991,046 + +0.9
991,228 + +0.4
991,231 + +0.0
991,253 + +0.2
991,255 + +0.3
991,263 - +0.0
991,278 + Atu3896 0.11 +0.4
991,351 + Atu3896 0.18 +0.4
991,368 + Atu3896 0.19 +0.3
991,368 + Atu3896 0.19 -0.5
991,415 + Atu3896 0.24 +0.4
991,415 + Atu3896 0.24 +0.6
991,423 - Atu3896 0.25 +1.0
991,430 - Atu3896 0.25 +0.4
991,510 + Atu3896 0.33 +0.3
991,515 + Atu3896 0.33 +0.1
991,515 + Atu3896 0.33 +1.7
991,515 - Atu3896 0.33 +0.7
991,556 + Atu3896 0.37 +0.5
991,587 + Atu3896 0.40 -1.0
991,597 - Atu3896 0.41 +0.9
991,787 + Atu3896 0.59 -0.3
991,817 - Atu3896 0.61 -0.2
991,852 + Atu3896 0.65 +1.4
991,860 - Atu3896 0.65 +0.6
991,871 + Atu3896 0.66 +0.2
991,879 - Atu3896 0.67 +0.8
991,888 - Atu3896 0.68 +0.4
991,955 - Atu3896 0.74 +0.5
992,023 - Atu3896 0.81 +0.3
992,030 + Atu3896 0.81 -0.9
992,038 + Atu3896 0.82 -0.7
992,041 - Atu3896 0.82 +0.2
992,102 - Atu3896 0.88 +0.2
992,139 + +0.1

Or see this region's nucleotide sequence