Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17085

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17075 and ABIE41_RS17080 are separated by 112 nucleotidesABIE41_RS17080 and ABIE41_RS17085 are separated by 355 nucleotidesABIE41_RS17085 and ABIE41_RS17090 are separated by 396 nucleotides ABIE41_RS17075: ABIE41_RS17075 - nucleoside-diphosphate kinase, at 3,517,640 to 3,518,062 _RS17075 ABIE41_RS17080: ABIE41_RS17080 - SEL1-like repeat protein, at 3,518,175 to 3,518,444 _RS17080 ABIE41_RS17085: ABIE41_RS17085 - DUF2147 domain-containing protein, at 3,518,800 to 3,519,198 _RS17085 ABIE41_RS17090: ABIE41_RS17090 - glutathione S-transferase N-terminal domain-containing protein, at 3,519,595 to 3,520,302 _RS17090 Position (kb) 3518 3519 3520Strain fitness (log2 ratio) -2 -1 0 1 2at 3518.119 kb on + strandat 3518.122 kb on - strandat 3518.353 kb on + strand, within ABIE41_RS17080at 3518.353 kb on + strand, within ABIE41_RS17080at 3518.353 kb on + strand, within ABIE41_RS17080at 3518.353 kb on + strand, within ABIE41_RS17080at 3518.353 kb on + strand, within ABIE41_RS17080at 3518.353 kb on + strand, within ABIE41_RS17080at 3518.354 kb on - strand, within ABIE41_RS17080at 3518.354 kb on - strand, within ABIE41_RS17080at 3518.354 kb on - strand, within ABIE41_RS17080at 3518.354 kb on - strand, within ABIE41_RS17080at 3518.354 kb on - strand, within ABIE41_RS17080at 3518.354 kb on - strand, within ABIE41_RS17080at 3518.354 kb on - strand, within ABIE41_RS17080at 3518.371 kb on + strand, within ABIE41_RS17080at 3518.374 kb on + strand, within ABIE41_RS17080at 3518.374 kb on + strand, within ABIE41_RS17080at 3518.374 kb on + strand, within ABIE41_RS17080at 3518.375 kb on - strand, within ABIE41_RS17080at 3518.375 kb on - strand, within ABIE41_RS17080at 3518.774 kb on + strandat 3518.774 kb on + strandat 3518.775 kb on - strandat 3518.992 kb on - strand, within ABIE41_RS17085at 3519.098 kb on - strand, within ABIE41_RS17085at 3519.098 kb on - strand, within ABIE41_RS17085at 3519.227 kb on + strandat 3519.228 kb on - strandat 3519.253 kb on - strandat 3519.253 kb on - strandat 3519.253 kb on - strandat 3519.253 kb on - strandat 3519.374 kb on + strandat 3519.374 kb on + strandat 3519.476 kb on + strandat 3519.828 kb on - strand, within ABIE41_RS17090at 3519.828 kb on - strand, within ABIE41_RS17090at 3519.828 kb on - strand, within ABIE41_RS17090at 3519.863 kb on + strand, within ABIE41_RS17090at 3519.887 kb on + strand, within ABIE41_RS17090at 3520.025 kb on + strand, within ABIE41_RS17090at 3520.053 kb on - strand, within ABIE41_RS17090

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,518,119 + +0.3
3,518,122 - +0.5
3,518,353 + ABIE41_RS17080 0.66 +0.5
3,518,353 + ABIE41_RS17080 0.66 +0.7
3,518,353 + ABIE41_RS17080 0.66 +0.9
3,518,353 + ABIE41_RS17080 0.66 -0.1
3,518,353 + ABIE41_RS17080 0.66 -0.5
3,518,353 + ABIE41_RS17080 0.66 -0.3
3,518,354 - ABIE41_RS17080 0.66 -0.1
3,518,354 - ABIE41_RS17080 0.66 -0.7
3,518,354 - ABIE41_RS17080 0.66 +0.3
3,518,354 - ABIE41_RS17080 0.66 +0.3
3,518,354 - ABIE41_RS17080 0.66 -1.0
3,518,354 - ABIE41_RS17080 0.66 +0.4
3,518,354 - ABIE41_RS17080 0.66 -0.7
3,518,371 + ABIE41_RS17080 0.73 -1.6
3,518,374 + ABIE41_RS17080 0.74 -0.1
3,518,374 + ABIE41_RS17080 0.74 +0.0
3,518,374 + ABIE41_RS17080 0.74 +0.6
3,518,375 - ABIE41_RS17080 0.74 -0.5
3,518,375 - ABIE41_RS17080 0.74 -0.7
3,518,774 + +0.6
3,518,774 + +0.3
3,518,775 - -0.1
3,518,992 - ABIE41_RS17085 0.48 +0.1
3,519,098 - ABIE41_RS17085 0.75 -0.6
3,519,098 - ABIE41_RS17085 0.75 -0.3
3,519,227 + -0.7
3,519,228 - +0.1
3,519,253 - +0.5
3,519,253 - -0.1
3,519,253 - -2.0
3,519,253 - -1.6
3,519,374 + -1.1
3,519,374 + +1.3
3,519,476 + +0.6
3,519,828 - ABIE41_RS17090 0.33 -2.4
3,519,828 - ABIE41_RS17090 0.33 -0.0
3,519,828 - ABIE41_RS17090 0.33 -0.5
3,519,863 + ABIE41_RS17090 0.38 -2.2
3,519,887 + ABIE41_RS17090 0.41 -0.8
3,520,025 + ABIE41_RS17090 0.61 +1.9
3,520,053 - ABIE41_RS17090 0.65 -0.4

Or see this region's nucleotide sequence