Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17075 and ABIE41_RS17080 are separated by 112 nucleotides ABIE41_RS17080 and ABIE41_RS17085 are separated by 355 nucleotides ABIE41_RS17085 and ABIE41_RS17090 are separated by 396 nucleotides
ABIE41_RS17075: ABIE41_RS17075 - nucleoside-diphosphate kinase, at 3,517,640 to 3,518,062
_RS17075
ABIE41_RS17080: ABIE41_RS17080 - SEL1-like repeat protein, at 3,518,175 to 3,518,444
_RS17080
ABIE41_RS17085: ABIE41_RS17085 - DUF2147 domain-containing protein, at 3,518,800 to 3,519,198
_RS17085
ABIE41_RS17090: ABIE41_RS17090 - glutathione S-transferase N-terminal domain-containing protein, at 3,519,595 to 3,520,302
_RS17090
Position (kb)
3518
3519
3520 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3518.119 kb on + strand at 3518.122 kb on - strand at 3518.353 kb on + strand, within ABIE41_RS17080 at 3518.353 kb on + strand, within ABIE41_RS17080 at 3518.353 kb on + strand, within ABIE41_RS17080 at 3518.353 kb on + strand, within ABIE41_RS17080 at 3518.353 kb on + strand, within ABIE41_RS17080 at 3518.353 kb on + strand, within ABIE41_RS17080 at 3518.354 kb on - strand, within ABIE41_RS17080 at 3518.354 kb on - strand, within ABIE41_RS17080 at 3518.354 kb on - strand, within ABIE41_RS17080 at 3518.354 kb on - strand, within ABIE41_RS17080 at 3518.354 kb on - strand, within ABIE41_RS17080 at 3518.354 kb on - strand, within ABIE41_RS17080 at 3518.354 kb on - strand, within ABIE41_RS17080 at 3518.371 kb on + strand, within ABIE41_RS17080 at 3518.374 kb on + strand, within ABIE41_RS17080 at 3518.374 kb on + strand, within ABIE41_RS17080 at 3518.374 kb on + strand, within ABIE41_RS17080 at 3518.375 kb on - strand, within ABIE41_RS17080 at 3518.375 kb on - strand, within ABIE41_RS17080 at 3518.774 kb on + strand at 3518.774 kb on + strand at 3518.775 kb on - strand at 3518.992 kb on - strand, within ABIE41_RS17085 at 3519.098 kb on - strand, within ABIE41_RS17085 at 3519.098 kb on - strand, within ABIE41_RS17085 at 3519.227 kb on + strand at 3519.228 kb on - strand at 3519.253 kb on - strand at 3519.253 kb on - strand at 3519.253 kb on - strand at 3519.253 kb on - strand at 3519.374 kb on + strand at 3519.374 kb on + strand at 3519.476 kb on + strand at 3519.828 kb on - strand, within ABIE41_RS17090 at 3519.828 kb on - strand, within ABIE41_RS17090 at 3519.828 kb on - strand, within ABIE41_RS17090 at 3519.863 kb on + strand, within ABIE41_RS17090 at 3519.887 kb on + strand, within ABIE41_RS17090 at 3520.025 kb on + strand, within ABIE41_RS17090 at 3520.053 kb on - strand, within ABIE41_RS17090
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 3,518,119 + +0.3 3,518,122 - +0.5 3,518,353 + ABIE41_RS17080 0.66 +0.5 3,518,353 + ABIE41_RS17080 0.66 +0.7 3,518,353 + ABIE41_RS17080 0.66 +0.9 3,518,353 + ABIE41_RS17080 0.66 -0.1 3,518,353 + ABIE41_RS17080 0.66 -0.5 3,518,353 + ABIE41_RS17080 0.66 -0.3 3,518,354 - ABIE41_RS17080 0.66 -0.1 3,518,354 - ABIE41_RS17080 0.66 -0.7 3,518,354 - ABIE41_RS17080 0.66 +0.3 3,518,354 - ABIE41_RS17080 0.66 +0.3 3,518,354 - ABIE41_RS17080 0.66 -1.0 3,518,354 - ABIE41_RS17080 0.66 +0.4 3,518,354 - ABIE41_RS17080 0.66 -0.7 3,518,371 + ABIE41_RS17080 0.73 -1.6 3,518,374 + ABIE41_RS17080 0.74 -0.1 3,518,374 + ABIE41_RS17080 0.74 +0.0 3,518,374 + ABIE41_RS17080 0.74 +0.6 3,518,375 - ABIE41_RS17080 0.74 -0.5 3,518,375 - ABIE41_RS17080 0.74 -0.7 3,518,774 + +0.6 3,518,774 + +0.3 3,518,775 - -0.1 3,518,992 - ABIE41_RS17085 0.48 +0.1 3,519,098 - ABIE41_RS17085 0.75 -0.6 3,519,098 - ABIE41_RS17085 0.75 -0.3 3,519,227 + -0.7 3,519,228 - +0.1 3,519,253 - +0.5 3,519,253 - -0.1 3,519,253 - -2.0 3,519,253 - -1.6 3,519,374 + -1.1 3,519,374 + +1.3 3,519,476 + +0.6 3,519,828 - ABIE41_RS17090 0.33 -2.4 3,519,828 - ABIE41_RS17090 0.33 -0.0 3,519,828 - ABIE41_RS17090 0.33 -0.5 3,519,863 + ABIE41_RS17090 0.38 -2.2 3,519,887 + ABIE41_RS17090 0.41 -0.8 3,520,025 + ABIE41_RS17090 0.61 +1.9 3,520,053 - ABIE41_RS17090 0.65 -0.4
Or see this region's nucleotide sequence