Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17040 and ABIE41_RS17045 overlap by 4 nucleotides ABIE41_RS17045 and ABIE41_RS17050 overlap by 73 nucleotides ABIE41_RS17050 and ABIE41_RS17055 are separated by 116 nucleotides ABIE41_RS17055 and ABIE41_RS17060 overlap by 17 nucleotides
ABIE41_RS17040: ABIE41_RS17040 - phosphoribosylformylglycinamidine cyclo-ligase, at 3,510,728 to 3,511,801
_RS17040
ABIE41_RS17045: ABIE41_RS17045 - phosphoribosylglycinamide formyltransferase, at 3,511,798 to 3,512,422
_RS17045
ABIE41_RS17050: ABIE41_RS17050 - YafY family protein, at 3,512,350 to 3,513,138
_RS17050
ABIE41_RS17055: ABIE41_RS17055 - glutathione S-transferase family protein, at 3,513,255 to 3,513,977
_RS17055
ABIE41_RS17060: ABIE41_RS17060 - hypothetical protein, at 3,513,961 to 3,514,323
_RS17060
Position (kb)
3512
3513
3514 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3511.427 kb on + strand, within ABIE41_RS17040 at 3511.427 kb on + strand, within ABIE41_RS17040 at 3511.428 kb on - strand, within ABIE41_RS17040 at 3511.778 kb on + strand at 3511.779 kb on - strand at 3512.140 kb on + strand, within ABIE41_RS17045 at 3512.180 kb on - strand, within ABIE41_RS17045 at 3512.180 kb on - strand, within ABIE41_RS17045 at 3512.756 kb on + strand, within ABIE41_RS17050 at 3512.757 kb on - strand, within ABIE41_RS17050 at 3512.963 kb on + strand, within ABIE41_RS17050 at 3512.964 kb on - strand, within ABIE41_RS17050 at 3512.964 kb on - strand, within ABIE41_RS17050 at 3512.964 kb on - strand, within ABIE41_RS17050 at 3513.139 kb on - strand at 3513.260 kb on + strand at 3513.261 kb on - strand at 3513.261 kb on - strand at 3513.555 kb on + strand, within ABIE41_RS17055 at 3513.690 kb on - strand, within ABIE41_RS17055 at 3513.690 kb on - strand, within ABIE41_RS17055 at 3513.915 kb on + strand at 3514.095 kb on - strand, within ABIE41_RS17060 at 3514.111 kb on - strand, within ABIE41_RS17060
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 3,511,427 + ABIE41_RS17040 0.65 -1.1 3,511,427 + ABIE41_RS17040 0.65 -0.7 3,511,428 - ABIE41_RS17040 0.65 -1.4 3,511,778 + -0.6 3,511,779 - -1.5 3,512,140 + ABIE41_RS17045 0.55 -1.1 3,512,180 - ABIE41_RS17045 0.61 -2.2 3,512,180 - ABIE41_RS17045 0.61 -2.1 3,512,756 + ABIE41_RS17050 0.51 -1.6 3,512,757 - ABIE41_RS17050 0.52 +0.0 3,512,963 + ABIE41_RS17050 0.78 -0.8 3,512,964 - ABIE41_RS17050 0.78 -0.6 3,512,964 - ABIE41_RS17050 0.78 +0.5 3,512,964 - ABIE41_RS17050 0.78 +0.0 3,513,139 - +0.3 3,513,260 + -1.6 3,513,261 - +0.5 3,513,261 - -0.8 3,513,555 + ABIE41_RS17055 0.41 +1.8 3,513,690 - ABIE41_RS17055 0.60 -0.0 3,513,690 - ABIE41_RS17055 0.60 -0.9 3,513,915 + +1.2 3,514,095 - ABIE41_RS17060 0.37 -0.1 3,514,111 - ABIE41_RS17060 0.41 -0.7
Or see this region's nucleotide sequence