Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17050

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17040 and ABIE41_RS17045 overlap by 4 nucleotidesABIE41_RS17045 and ABIE41_RS17050 overlap by 73 nucleotidesABIE41_RS17050 and ABIE41_RS17055 are separated by 116 nucleotidesABIE41_RS17055 and ABIE41_RS17060 overlap by 17 nucleotides ABIE41_RS17040: ABIE41_RS17040 - phosphoribosylformylglycinamidine cyclo-ligase, at 3,510,728 to 3,511,801 _RS17040 ABIE41_RS17045: ABIE41_RS17045 - phosphoribosylglycinamide formyltransferase, at 3,511,798 to 3,512,422 _RS17045 ABIE41_RS17050: ABIE41_RS17050 - YafY family protein, at 3,512,350 to 3,513,138 _RS17050 ABIE41_RS17055: ABIE41_RS17055 - glutathione S-transferase family protein, at 3,513,255 to 3,513,977 _RS17055 ABIE41_RS17060: ABIE41_RS17060 - hypothetical protein, at 3,513,961 to 3,514,323 _RS17060 Position (kb) 3512 3513 3514Strain fitness (log2 ratio) -2 -1 0 1 2at 3511.427 kb on + strand, within ABIE41_RS17040at 3511.427 kb on + strand, within ABIE41_RS17040at 3511.428 kb on - strand, within ABIE41_RS17040at 3511.778 kb on + strandat 3511.779 kb on - strandat 3512.140 kb on + strand, within ABIE41_RS17045at 3512.180 kb on - strand, within ABIE41_RS17045at 3512.180 kb on - strand, within ABIE41_RS17045at 3512.756 kb on + strand, within ABIE41_RS17050at 3512.757 kb on - strand, within ABIE41_RS17050at 3512.963 kb on + strand, within ABIE41_RS17050at 3512.964 kb on - strand, within ABIE41_RS17050at 3512.964 kb on - strand, within ABIE41_RS17050at 3512.964 kb on - strand, within ABIE41_RS17050at 3513.139 kb on - strandat 3513.260 kb on + strandat 3513.261 kb on - strandat 3513.261 kb on - strandat 3513.555 kb on + strand, within ABIE41_RS17055at 3513.690 kb on - strand, within ABIE41_RS17055at 3513.690 kb on - strand, within ABIE41_RS17055at 3513.915 kb on + strandat 3514.095 kb on - strand, within ABIE41_RS17060at 3514.111 kb on - strand, within ABIE41_RS17060

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,511,427 + ABIE41_RS17040 0.65 -1.1
3,511,427 + ABIE41_RS17040 0.65 -0.7
3,511,428 - ABIE41_RS17040 0.65 -1.4
3,511,778 + -0.6
3,511,779 - -1.5
3,512,140 + ABIE41_RS17045 0.55 -1.1
3,512,180 - ABIE41_RS17045 0.61 -2.2
3,512,180 - ABIE41_RS17045 0.61 -2.1
3,512,756 + ABIE41_RS17050 0.51 -1.6
3,512,757 - ABIE41_RS17050 0.52 +0.0
3,512,963 + ABIE41_RS17050 0.78 -0.8
3,512,964 - ABIE41_RS17050 0.78 -0.6
3,512,964 - ABIE41_RS17050 0.78 +0.5
3,512,964 - ABIE41_RS17050 0.78 +0.0
3,513,139 - +0.3
3,513,260 + -1.6
3,513,261 - +0.5
3,513,261 - -0.8
3,513,555 + ABIE41_RS17055 0.41 +1.8
3,513,690 - ABIE41_RS17055 0.60 -0.0
3,513,690 - ABIE41_RS17055 0.60 -0.9
3,513,915 + +1.2
3,514,095 - ABIE41_RS17060 0.37 -0.1
3,514,111 - ABIE41_RS17060 0.41 -0.7

Or see this region's nucleotide sequence