Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15175 and ABIE41_RS15180 are separated by 145 nucleotides ABIE41_RS15180 and ABIE41_RS15185 are separated by 148 nucleotides ABIE41_RS15185 and ABIE41_RS15190 are separated by 164 nucleotides ABIE41_RS15190 and ABIE41_RS15195 are separated by 237 nucleotides
ABIE41_RS15175: ABIE41_RS15175 - DUF2865 domain-containing protein, at 3,104,780 to 3,105,874
_RS15175
ABIE41_RS15180: ABIE41_RS15180 - MAPEG family protein, at 3,106,020 to 3,106,430
_RS15180
ABIE41_RS15185: ABIE41_RS15185 - IMP dehydrogenase, at 3,106,579 to 3,108,072
_RS15185
ABIE41_RS15190: ABIE41_RS15190 - hypothetical protein, at 3,108,237 to 3,108,581
_RS15190
ABIE41_RS15195: ABIE41_RS15195 - MFS transporter, at 3,108,819 to 3,110,270
_RS15195
Position (kb)
3106
3107
3108
3109 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3105.892 kb on - strand at 3105.926 kb on - strand at 3105.931 kb on - strand at 3105.940 kb on + strand at 3106.153 kb on + strand, within ABIE41_RS15180 at 3106.153 kb on + strand, within ABIE41_RS15180 at 3106.153 kb on + strand, within ABIE41_RS15180 at 3106.153 kb on + strand, within ABIE41_RS15180 at 3106.154 kb on - strand, within ABIE41_RS15180 at 3106.180 kb on + strand, within ABIE41_RS15180 at 3106.180 kb on + strand, within ABIE41_RS15180 at 3106.180 kb on + strand, within ABIE41_RS15180 at 3106.180 kb on + strand, within ABIE41_RS15180 at 3106.180 kb on + strand, within ABIE41_RS15180 at 3106.180 kb on + strand, within ABIE41_RS15180 at 3106.180 kb on + strand, within ABIE41_RS15180 at 3106.181 kb on - strand, within ABIE41_RS15180 at 3106.181 kb on - strand, within ABIE41_RS15180 at 3106.181 kb on - strand, within ABIE41_RS15180 at 3106.289 kb on - strand, within ABIE41_RS15180 at 3106.289 kb on - strand, within ABIE41_RS15180 at 3106.570 kb on - strand at 3106.596 kb on - strand at 3106.688 kb on + strand at 3106.689 kb on - strand at 3106.715 kb on + strand at 3106.715 kb on + strand at 3106.716 kb on - strand at 3106.716 kb on - strand at 3106.716 kb on - strand at 3106.777 kb on - strand, within ABIE41_RS15185 at 3106.778 kb on + strand, within ABIE41_RS15185 at 3106.779 kb on - strand, within ABIE41_RS15185 at 3106.831 kb on - strand, within ABIE41_RS15185 at 3106.844 kb on + strand, within ABIE41_RS15185 at 3106.895 kb on + strand, within ABIE41_RS15185 at 3107.021 kb on + strand, within ABIE41_RS15185 at 3107.021 kb on + strand, within ABIE41_RS15185 at 3107.022 kb on - strand, within ABIE41_RS15185 at 3107.022 kb on - strand, within ABIE41_RS15185 at 3107.589 kb on + strand, within ABIE41_RS15185 at 3107.589 kb on + strand, within ABIE41_RS15185 at 3108.175 kb on - strand at 3108.239 kb on - strand at 3108.239 kb on - strand at 3108.786 kb on - strand at 3108.966 kb on + strand, within ABIE41_RS15195 at 3108.966 kb on + strand, within ABIE41_RS15195 at 3108.967 kb on - strand, within ABIE41_RS15195 at 3108.967 kb on - strand, within ABIE41_RS15195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 3,105,892 - -0.0 3,105,926 - +1.0 3,105,931 - -1.1 3,105,940 + -1.1 3,106,153 + ABIE41_RS15180 0.32 -1.6 3,106,153 + ABIE41_RS15180 0.32 -0.3 3,106,153 + ABIE41_RS15180 0.32 -1.6 3,106,153 + ABIE41_RS15180 0.32 -0.1 3,106,154 - ABIE41_RS15180 0.33 +0.5 3,106,180 + ABIE41_RS15180 0.39 +0.5 3,106,180 + ABIE41_RS15180 0.39 +1.2 3,106,180 + ABIE41_RS15180 0.39 +0.1 3,106,180 + ABIE41_RS15180 0.39 +0.1 3,106,180 + ABIE41_RS15180 0.39 -0.6 3,106,180 + ABIE41_RS15180 0.39 +1.0 3,106,180 + ABIE41_RS15180 0.39 +0.8 3,106,181 - ABIE41_RS15180 0.39 -0.4 3,106,181 - ABIE41_RS15180 0.39 -0.5 3,106,181 - ABIE41_RS15180 0.39 +0.6 3,106,289 - ABIE41_RS15180 0.65 +0.3 3,106,289 - ABIE41_RS15180 0.65 +0.9 3,106,570 - +0.2 3,106,596 - +0.3 3,106,688 + -0.9 3,106,689 - -0.3 3,106,715 + -0.1 3,106,715 + +1.2 3,106,716 - +1.1 3,106,716 - +0.9 3,106,716 - -0.5 3,106,777 - ABIE41_RS15185 0.13 -2.6 3,106,778 + ABIE41_RS15185 0.13 -0.9 3,106,779 - ABIE41_RS15185 0.13 +0.5 3,106,831 - ABIE41_RS15185 0.17 -0.5 3,106,844 + ABIE41_RS15185 0.18 -3.0 3,106,895 + ABIE41_RS15185 0.21 -2.1 3,107,021 + ABIE41_RS15185 0.30 -2.2 3,107,021 + ABIE41_RS15185 0.30 +1.9 3,107,022 - ABIE41_RS15185 0.30 +1.6 3,107,022 - ABIE41_RS15185 0.30 +0.3 3,107,589 + ABIE41_RS15185 0.68 -0.9 3,107,589 + ABIE41_RS15185 0.68 +0.2 3,108,175 - -0.3 3,108,239 - +1.3 3,108,239 - +0.2 3,108,786 - +1.1 3,108,966 + ABIE41_RS15195 0.10 -0.2 3,108,966 + ABIE41_RS15195 0.10 -2.5 3,108,967 - ABIE41_RS15195 0.10 -0.5 3,108,967 - ABIE41_RS15195 0.10 +0.3
Or see this region's nucleotide sequence