Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14180

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS14175 and ABIE41_RS14180 are separated by 346 nucleotidesABIE41_RS14180 and ABIE41_RS14185 are separated by 12 nucleotides ABIE41_RS14175: ABIE41_RS14175 - MFS transporter, at 2,902,674 to 2,904,299 _RS14175 ABIE41_RS14180: ABIE41_RS14180 - hypothetical protein, at 2,904,646 to 2,905,170 _RS14180 ABIE41_RS14185: ABIE41_RS14185 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,905,183 to 2,906,028 _RS14185 Position (kb) 2904 2905 2906Strain fitness (log2 ratio) -2 -1 0 1at 2903.658 kb on + strand, within ABIE41_RS14175at 2903.863 kb on + strand, within ABIE41_RS14175at 2903.864 kb on - strand, within ABIE41_RS14175at 2903.864 kb on - strand, within ABIE41_RS14175at 2903.864 kb on - strand, within ABIE41_RS14175at 2903.902 kb on + strand, within ABIE41_RS14175at 2903.902 kb on + strand, within ABIE41_RS14175at 2903.903 kb on - strand, within ABIE41_RS14175at 2903.921 kb on - strand, within ABIE41_RS14175at 2903.921 kb on - strand, within ABIE41_RS14175at 2903.998 kb on + strand, within ABIE41_RS14175at 2903.998 kb on + strand, within ABIE41_RS14175at 2903.999 kb on - strand, within ABIE41_RS14175at 2903.999 kb on - strand, within ABIE41_RS14175at 2903.999 kb on - strand, within ABIE41_RS14175at 2904.064 kb on + strand, within ABIE41_RS14175at 2904.064 kb on + strand, within ABIE41_RS14175at 2904.064 kb on + strand, within ABIE41_RS14175at 2904.065 kb on - strand, within ABIE41_RS14175at 2904.065 kb on - strand, within ABIE41_RS14175at 2904.065 kb on - strand, within ABIE41_RS14175at 2904.065 kb on - strand, within ABIE41_RS14175at 2904.230 kb on - strandat 2904.230 kb on - strandat 2904.355 kb on - strandat 2904.355 kb on - strandat 2904.527 kb on + strandat 2904.528 kb on - strandat 2904.528 kb on - strandat 2904.528 kb on - strandat 2904.538 kb on - strandat 2904.599 kb on + strandat 2904.599 kb on + strandat 2904.599 kb on + strandat 2904.599 kb on + strandat 2904.600 kb on - strandat 2904.600 kb on - strandat 2904.600 kb on - strandat 2904.981 kb on + strand, within ABIE41_RS14180at 2904.981 kb on + strand, within ABIE41_RS14180at 2904.981 kb on + strand, within ABIE41_RS14180at 2904.981 kb on + strand, within ABIE41_RS14180at 2904.982 kb on - strand, within ABIE41_RS14180at 2904.982 kb on - strand, within ABIE41_RS14180at 2905.034 kb on - strand, within ABIE41_RS14180at 2905.077 kb on - strand, within ABIE41_RS14180at 2905.077 kb on - strand, within ABIE41_RS14180at 2905.077 kb on - strand, within ABIE41_RS14180at 2905.205 kb on + strandat 2905.205 kb on + strandat 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
2,903,658 + ABIE41_RS14175 0.61 -1.8
2,903,863 + ABIE41_RS14175 0.73 -0.6
2,903,864 - ABIE41_RS14175 0.73 -2.0
2,903,864 - ABIE41_RS14175 0.73 -0.3
2,903,864 - ABIE41_RS14175 0.73 +0.6
2,903,902 + ABIE41_RS14175 0.76 -0.2
2,903,902 + ABIE41_RS14175 0.76 -0.2
2,903,903 - ABIE41_RS14175 0.76 -2.0
2,903,921 - ABIE41_RS14175 0.77 +0.6
2,903,921 - ABIE41_RS14175 0.77 -0.8
2,903,998 + ABIE41_RS14175 0.81 +0.8
2,903,998 + ABIE41_RS14175 0.81 +0.7
2,903,999 - ABIE41_RS14175 0.81 -1.1
2,903,999 - ABIE41_RS14175 0.81 -0.4
2,903,999 - ABIE41_RS14175 0.81 -0.6
2,904,064 + ABIE41_RS14175 0.85 -1.3
2,904,064 + ABIE41_RS14175 0.85 +0.9
2,904,064 + ABIE41_RS14175 0.85 -1.0
2,904,065 - ABIE41_RS14175 0.86 -0.5
2,904,065 - ABIE41_RS14175 0.86 -0.1
2,904,065 - ABIE41_RS14175 0.86 -0.5
2,904,065 - ABIE41_RS14175 0.86 -0.7
2,904,230 - -0.2
2,904,230 - +0.7
2,904,355 - +0.3
2,904,355 - +0.3
2,904,527 + -0.1
2,904,528 - -1.1
2,904,528 - +0.5
2,904,528 - +0.3
2,904,538 - -0.7
2,904,599 + -0.7
2,904,599 + +0.7
2,904,599 + -1.1
2,904,599 + +0.3
2,904,600 - +1.0
2,904,600 - -0.1
2,904,600 - +0.3
2,904,981 + ABIE41_RS14180 0.64 -0.5
2,904,981 + ABIE41_RS14180 0.64 -0.5
2,904,981 + ABIE41_RS14180 0.64 -1.0
2,904,981 + ABIE41_RS14180 0.64 -0.0
2,904,982 - ABIE41_RS14180 0.64 +0.9
2,904,982 - ABIE41_RS14180 0.64 +0.4
2,905,034 - ABIE41_RS14180 0.74 -0.9
2,905,077 - ABIE41_RS14180 0.82 -0.7
2,905,077 - ABIE41_RS14180 0.82 +0.3
2,905,077 - ABIE41_RS14180 0.82 +0.8
2,905,205 + -2.5
2,905,205 + +0.2
2,905,683 - ABIE41_RS14185 0.59 +0.2
2,905,683 - ABIE41_RS14185 0.59 -0.0
2,905,683 - ABIE41_RS14185 0.59 +0.0
2,905,683 - ABIE41_RS14185 0.59 +1.3

Or see this region's nucleotide sequence