Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS12900 and ABIE41_RS12905 overlap by 4 nucleotides ABIE41_RS12905 and ABIE41_RS12910 are separated by 39 nucleotides ABIE41_RS12910 and ABIE41_RS12915 are separated by 112 nucleotides ABIE41_RS12915 and ABIE41_RS12920 are separated by 27 nucleotides
ABIE41_RS12900: ABIE41_RS12900 - glutathione S-transferase family protein, at 2,641,917 to 2,642,630
_RS12900
ABIE41_RS12905: ABIE41_RS12905 - acetolactate synthase small subunit, at 2,642,627 to 2,643,166
_RS12905
ABIE41_RS12910: ABIE41_RS12910 - hypothetical protein, at 2,643,206 to 2,643,421
_RS12910
ABIE41_RS12915: ABIE41_RS12915 - TetR/AcrR family transcriptional regulator C-terminal domain-containing protein, at 2,643,534 to 2,644,202
_RS12915
ABIE41_RS12920: ABIE41_RS12920 - ketol-acid reductoisomerase, at 2,644,230 to 2,645,250
_RS12920
Position (kb)
2643
2644
2645 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2642.756 kb on + strand, within ABIE41_RS12905 at 2642.757 kb on - strand, within ABIE41_RS12905 at 2643.164 kb on + strand at 2643.164 kb on + strand at 2643.164 kb on + strand at 2643.164 kb on + strand at 2643.164 kb on + strand at 2643.164 kb on + strand at 2643.164 kb on + strand at 2643.165 kb on - strand at 2643.165 kb on - strand at 2643.165 kb on - strand at 2643.165 kb on - strand at 2643.165 kb on - strand at 2643.481 kb on + strand at 2643.687 kb on + strand, within ABIE41_RS12915 at 2643.689 kb on + strand, within ABIE41_RS12915 at 2643.765 kb on + strand, within ABIE41_RS12915 at 2643.776 kb on + strand, within ABIE41_RS12915 at 2644.152 kb on + strand at 2644.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,642,756 + ABIE41_RS12905 0.24 +1.3 2,642,757 - ABIE41_RS12905 0.24 -0.1 2,643,164 + +1.0 2,643,164 + -0.3 2,643,164 + +0.0 2,643,164 + +0.4 2,643,164 + -0.5 2,643,164 + -1.3 2,643,164 + -0.3 2,643,165 - -0.3 2,643,165 - -0.4 2,643,165 - +1.1 2,643,165 - -0.2 2,643,165 - -0.1 2,643,481 + +0.8 2,643,687 + ABIE41_RS12915 0.23 +0.5 2,643,689 + ABIE41_RS12915 0.23 +1.3 2,643,765 + ABIE41_RS12915 0.35 -3.0 2,643,776 + ABIE41_RS12915 0.36 -0.1 2,644,152 + -0.7 2,644,152 + +0.7
Or see this region's nucleotide sequence