Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12915

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS12900 and ABIE41_RS12905 overlap by 4 nucleotidesABIE41_RS12905 and ABIE41_RS12910 are separated by 39 nucleotidesABIE41_RS12910 and ABIE41_RS12915 are separated by 112 nucleotidesABIE41_RS12915 and ABIE41_RS12920 are separated by 27 nucleotides ABIE41_RS12900: ABIE41_RS12900 - glutathione S-transferase family protein, at 2,641,917 to 2,642,630 _RS12900 ABIE41_RS12905: ABIE41_RS12905 - acetolactate synthase small subunit, at 2,642,627 to 2,643,166 _RS12905 ABIE41_RS12910: ABIE41_RS12910 - hypothetical protein, at 2,643,206 to 2,643,421 _RS12910 ABIE41_RS12915: ABIE41_RS12915 - TetR/AcrR family transcriptional regulator C-terminal domain-containing protein, at 2,643,534 to 2,644,202 _RS12915 ABIE41_RS12920: ABIE41_RS12920 - ketol-acid reductoisomerase, at 2,644,230 to 2,645,250 _RS12920 Position (kb) 2643 2644 2645Strain fitness (log2 ratio) -3 -2 -1 0 1at 2642.756 kb on + strand, within ABIE41_RS12905at 2642.757 kb on - strand, within ABIE41_RS12905at 2643.164 kb on + strandat 2643.164 kb on + strandat 2643.164 kb on + strandat 2643.164 kb on + strandat 2643.164 kb on + strandat 2643.164 kb on + strandat 2643.164 kb on + strandat 2643.165 kb on - strandat 2643.165 kb on - strandat 2643.165 kb on - strandat 2643.165 kb on - strandat 2643.165 kb on - strandat 2643.481 kb on + strandat 2643.687 kb on + strand, within ABIE41_RS12915at 2643.689 kb on + strand, within ABIE41_RS12915at 2643.765 kb on + strand, within ABIE41_RS12915at 2643.776 kb on + strand, within ABIE41_RS12915at 2644.152 kb on + strandat 2644.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,642,756 + ABIE41_RS12905 0.24 +1.3
2,642,757 - ABIE41_RS12905 0.24 -0.1
2,643,164 + +1.0
2,643,164 + -0.3
2,643,164 + +0.0
2,643,164 + +0.4
2,643,164 + -0.5
2,643,164 + -1.3
2,643,164 + -0.3
2,643,165 - -0.3
2,643,165 - -0.4
2,643,165 - +1.1
2,643,165 - -0.2
2,643,165 - -0.1
2,643,481 + +0.8
2,643,687 + ABIE41_RS12915 0.23 +0.5
2,643,689 + ABIE41_RS12915 0.23 +1.3
2,643,765 + ABIE41_RS12915 0.35 -3.0
2,643,776 + ABIE41_RS12915 0.36 -0.1
2,644,152 + -0.7
2,644,152 + +0.7

Or see this region's nucleotide sequence