Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02025 and ABIE41_RS02030 are separated by 71 nucleotides ABIE41_RS02030 and ABIE41_RS02035 are separated by 122 nucleotides ABIE41_RS02035 and ABIE41_RS02040 are separated by 167 nucleotides ABIE41_RS02040 and ABIE41_RS02045 overlap by 30 nucleotides
ABIE41_RS02025: ABIE41_RS02025 - LysR family transcriptional regulator, at 402,482 to 403,384
_RS02025
ABIE41_RS02030: ABIE41_RS02030 - class I SAM-dependent methyltransferase, at 403,456 to 404,127
_RS02030
ABIE41_RS02035: ABIE41_RS02035 - hypothetical protein, at 404,250 to 404,666
_RS02035
ABIE41_RS02040: ABIE41_RS02040 - tRNA-Arg, at 404,834 to 404,910
_RS02040
ABIE41_RS02045: ABIE41_RS02045 - recombinase family protein, at 404,881 to 406,548
_RS02045
Position (kb) 403
404
405 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 402.484 kb on - strand at 402.484 kb on - strand at 402.540 kb on + strand at 402.540 kb on + strand at 402.540 kb on + strand at 402.541 kb on - strand at 402.627 kb on - strand, within ABIE41_RS02025 at 402.661 kb on + strand, within ABIE41_RS02025 at 402.661 kb on + strand, within ABIE41_RS02025 at 402.661 kb on + strand, within ABIE41_RS02025 at 402.662 kb on - strand, within ABIE41_RS02025 at 402.882 kb on + strand, within ABIE41_RS02025 at 402.882 kb on + strand, within ABIE41_RS02025 at 402.882 kb on + strand, within ABIE41_RS02025 at 402.882 kb on + strand, within ABIE41_RS02025 at 402.882 kb on + strand, within ABIE41_RS02025 at 402.883 kb on - strand, within ABIE41_RS02025 at 402.883 kb on - strand, within ABIE41_RS02025 at 402.883 kb on - strand, within ABIE41_RS02025 at 402.883 kb on - strand, within ABIE41_RS02025 at 402.883 kb on - strand, within ABIE41_RS02025 at 403.396 kb on + strand at 403.437 kb on + strand at 403.437 kb on + strand at 403.438 kb on - strand at 403.534 kb on + strand, within ABIE41_RS02030 at 403.534 kb on + strand, within ABIE41_RS02030 at 403.534 kb on + strand, within ABIE41_RS02030 at 403.534 kb on + strand, within ABIE41_RS02030 at 403.534 kb on + strand, within ABIE41_RS02030 at 403.534 kb on + strand, within ABIE41_RS02030 at 403.534 kb on + strand, within ABIE41_RS02030 at 403.535 kb on - strand, within ABIE41_RS02030 at 403.535 kb on - strand, within ABIE41_RS02030 at 403.535 kb on - strand, within ABIE41_RS02030 at 403.535 kb on - strand, within ABIE41_RS02030 at 403.535 kb on - strand, within ABIE41_RS02030 at 403.535 kb on - strand, within ABIE41_RS02030 at 403.567 kb on + strand, within ABIE41_RS02030 at 403.680 kb on + strand, within ABIE41_RS02030 at 403.681 kb on - strand, within ABIE41_RS02030 at 403.681 kb on - strand, within ABIE41_RS02030 at 403.681 kb on - strand, within ABIE41_RS02030 at 403.681 kb on - strand, within ABIE41_RS02030 at 403.974 kb on + strand, within ABIE41_RS02030 at 404.631 kb on + strand at 404.632 kb on - strand at 404.935 kb on + strand at 404.935 kb on + strand at 404.935 kb on + strand at 404.935 kb on + strand at 404.935 kb on + strand at 404.935 kb on + strand at 404.936 kb on - strand at 404.936 kb on - strand at 404.936 kb on - strand at 404.936 kb on - strand at 404.936 kb on - strand at 404.936 kb on - strand at 404.936 kb on - strand at 404.936 kb on - strand at 405.044 kb on + strand at 405.044 kb on + strand at 405.045 kb on - strand at 405.045 kb on - strand at 405.045 kb on - strand at 405.045 kb on - strand at 405.045 kb on - strand at 405.045 kb on - strand at 405.112 kb on - strand, within ABIE41_RS02045 at 405.112 kb on - strand, within ABIE41_RS02045 at 405.112 kb on - strand, within ABIE41_RS02045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 402,484 - -0.6 402,484 - +0.3 402,540 + +0.9 402,540 + -0.0 402,540 + +0.5 402,541 - -0.2 402,627 - ABIE41_RS02025 0.16 +1.9 402,661 + ABIE41_RS02025 0.20 +0.5 402,661 + ABIE41_RS02025 0.20 -2.0 402,661 + ABIE41_RS02025 0.20 -0.2 402,662 - ABIE41_RS02025 0.20 -1.0 402,882 + ABIE41_RS02025 0.44 +1.4 402,882 + ABIE41_RS02025 0.44 +0.4 402,882 + ABIE41_RS02025 0.44 -2.6 402,882 + ABIE41_RS02025 0.44 -0.3 402,882 + ABIE41_RS02025 0.44 +0.6 402,883 - ABIE41_RS02025 0.44 -0.2 402,883 - ABIE41_RS02025 0.44 -1.0 402,883 - ABIE41_RS02025 0.44 -0.9 402,883 - ABIE41_RS02025 0.44 -0.4 402,883 - ABIE41_RS02025 0.44 -0.2 403,396 + -2.9 403,437 + -1.7 403,437 + -1.3 403,438 - +0.9 403,534 + ABIE41_RS02030 0.12 -0.4 403,534 + ABIE41_RS02030 0.12 -0.2 403,534 + ABIE41_RS02030 0.12 -0.1 403,534 + ABIE41_RS02030 0.12 +0.4 403,534 + ABIE41_RS02030 0.12 -0.1 403,534 + ABIE41_RS02030 0.12 +0.1 403,534 + ABIE41_RS02030 0.12 -1.3 403,535 - ABIE41_RS02030 0.12 -1.0 403,535 - ABIE41_RS02030 0.12 -1.0 403,535 - ABIE41_RS02030 0.12 -0.5 403,535 - ABIE41_RS02030 0.12 -1.5 403,535 - ABIE41_RS02030 0.12 +0.6 403,535 - ABIE41_RS02030 0.12 +0.4 403,567 + ABIE41_RS02030 0.17 -0.9 403,680 + ABIE41_RS02030 0.33 +0.2 403,681 - ABIE41_RS02030 0.33 -1.3 403,681 - ABIE41_RS02030 0.33 +1.7 403,681 - ABIE41_RS02030 0.33 -0.8 403,681 - ABIE41_RS02030 0.33 -0.7 403,974 + ABIE41_RS02030 0.77 +0.2 404,631 + +0.9 404,632 - -0.3 404,935 + +0.1 404,935 + -4.0 404,935 + -0.9 404,935 + +0.0 404,935 + +0.3 404,935 + -0.9 404,936 - +1.3 404,936 - +0.2 404,936 - +0.5 404,936 - -0.9 404,936 - +0.2 404,936 - -0.8 404,936 - -2.0 404,936 - -0.4 405,044 + +0.2 405,044 + +1.1 405,045 - +1.1 405,045 - +0.3 405,045 - -1.3 405,045 - +1.1 405,045 - -2.1 405,045 - +0.7 405,112 - ABIE41_RS02045 0.14 -0.5 405,112 - ABIE41_RS02045 0.14 +0.6 405,112 - ABIE41_RS02045 0.14 +0.1
Or see this region's nucleotide sequence