Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30765 and ABIE40_RS30770 are separated by 76 nucleotides ABIE40_RS30770 and ABIE40_RS30775 are separated by 106 nucleotides
ABIE40_RS30765: ABIE40_RS30765 - DUF1003 domain-containing protein, at 841,452 to 842,018
_RS30765
ABIE40_RS30770: ABIE40_RS30770 - neutral zinc metallopeptidase, at 842,095 to 843,018
_RS30770
ABIE40_RS30775: ABIE40_RS30775 - ferritin-like domain-containing protein, at 843,125 to 843,637
_RS30775
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1 at 841.293 kb on + strand at 841.294 kb on - strand at 841.400 kb on + strand at 841.400 kb on + strand at 841.401 kb on - strand at 841.401 kb on - strand at 841.451 kb on + strand at 841.452 kb on - strand at 841.452 kb on - strand at 841.522 kb on + strand, within ABIE40_RS30765 at 841.612 kb on - strand, within ABIE40_RS30765 at 841.654 kb on + strand, within ABIE40_RS30765 at 841.654 kb on + strand, within ABIE40_RS30765 at 841.655 kb on - strand, within ABIE40_RS30765 at 841.655 kb on - strand, within ABIE40_RS30765 at 842.210 kb on + strand, within ABIE40_RS30770 at 842.312 kb on + strand, within ABIE40_RS30770 at 842.312 kb on + strand, within ABIE40_RS30770 at 842.440 kb on + strand, within ABIE40_RS30770 at 842.471 kb on + strand, within ABIE40_RS30770 at 842.472 kb on - strand, within ABIE40_RS30770 at 842.541 kb on - strand, within ABIE40_RS30770 at 842.565 kb on - strand, within ABIE40_RS30770 at 842.646 kb on - strand, within ABIE40_RS30770 at 842.646 kb on - strand, within ABIE40_RS30770 at 842.682 kb on + strand, within ABIE40_RS30770 at 842.682 kb on + strand, within ABIE40_RS30770 at 842.682 kb on + strand, within ABIE40_RS30770 at 842.683 kb on - strand, within ABIE40_RS30770 at 842.716 kb on + strand, within ABIE40_RS30770 at 842.716 kb on + strand, within ABIE40_RS30770 at 842.716 kb on + strand, within ABIE40_RS30770 at 842.717 kb on - strand, within ABIE40_RS30770 at 842.852 kb on + strand, within ABIE40_RS30770 at 842.852 kb on + strand, within ABIE40_RS30770 at 842.853 kb on - strand, within ABIE40_RS30770 at 842.853 kb on - strand, within ABIE40_RS30770 at 842.947 kb on - strand at 842.947 kb on - strand at 843.050 kb on + strand at 843.053 kb on + strand at 843.126 kb on + strand at 843.127 kb on - strand at 843.217 kb on + strand, within ABIE40_RS30775 at 843.297 kb on + strand, within ABIE40_RS30775 at 843.640 kb on + strand at 843.829 kb on + strand at 843.830 kb on - strand at 843.936 kb on + strand at 843.984 kb on + strand at 843.991 kb on - strand at 844.011 kb on + strand at 844.011 kb on + strand at 844.011 kb on + strand at 844.011 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 841,293 + +0.2 841,294 - -0.6 841,400 + -1.3 841,400 + -1.4 841,401 - -0.4 841,401 - +1.3 841,451 + -0.6 841,452 - +0.9 841,452 - -0.5 841,522 + ABIE40_RS30765 0.12 +0.0 841,612 - ABIE40_RS30765 0.28 -0.6 841,654 + ABIE40_RS30765 0.36 -0.0 841,654 + ABIE40_RS30765 0.36 -0.5 841,655 - ABIE40_RS30765 0.36 -2.0 841,655 - ABIE40_RS30765 0.36 -0.7 842,210 + ABIE40_RS30770 0.12 -0.0 842,312 + ABIE40_RS30770 0.23 -0.9 842,312 + ABIE40_RS30770 0.23 -2.5 842,440 + ABIE40_RS30770 0.37 -0.9 842,471 + ABIE40_RS30770 0.41 +0.1 842,472 - ABIE40_RS30770 0.41 -0.9 842,541 - ABIE40_RS30770 0.48 -0.4 842,565 - ABIE40_RS30770 0.51 -1.2 842,646 - ABIE40_RS30770 0.60 +0.3 842,646 - ABIE40_RS30770 0.60 -0.4 842,682 + ABIE40_RS30770 0.64 +1.1 842,682 + ABIE40_RS30770 0.64 -0.0 842,682 + ABIE40_RS30770 0.64 -0.7 842,683 - ABIE40_RS30770 0.64 -1.4 842,716 + ABIE40_RS30770 0.67 +0.0 842,716 + ABIE40_RS30770 0.67 +1.2 842,716 + ABIE40_RS30770 0.67 -0.7 842,717 - ABIE40_RS30770 0.67 +0.1 842,852 + ABIE40_RS30770 0.82 -0.0 842,852 + ABIE40_RS30770 0.82 -1.0 842,853 - ABIE40_RS30770 0.82 +0.5 842,853 - ABIE40_RS30770 0.82 -0.1 842,947 - -1.1 842,947 - -0.8 843,050 + -0.8 843,053 + +1.3 843,126 + -0.6 843,127 - -0.5 843,217 + ABIE40_RS30775 0.18 -1.7 843,297 + ABIE40_RS30775 0.34 -0.7 843,640 + -0.9 843,829 + +0.8 843,830 - +0.5 843,936 + +1.2 843,984 + +0.3 843,991 - -1.9 844,011 + +0.9 844,011 + -0.1 844,011 + -0.2 844,011 + -0.5
Or see this region's nucleotide sequence