Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30610 and ABIE40_RS30615 are separated by 268 nucleotides ABIE40_RS30615 and ABIE40_RS30620 overlap by 1 nucleotides ABIE40_RS30620 and ABIE40_RS30625 overlap by 8 nucleotides
ABIE40_RS30610: ABIE40_RS30610 - adenylate/guanylate cyclase domain-containing protein, at 812,918 to 814,138
_RS30610
ABIE40_RS30615: ABIE40_RS30615 - DUF3618 domain-containing protein, at 814,407 to 815,396
_RS30615
ABIE40_RS30620: ABIE40_RS30620 - phage holin family protein, at 815,396 to 815,812
_RS30620
ABIE40_RS30625: ABIE40_RS30625 - nutrient deprivation-induced protein, at 815,805 to 816,359
_RS30625
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 813.434 kb on + strand, within ABIE40_RS30610 at 813.434 kb on + strand, within ABIE40_RS30610 at 813.518 kb on + strand, within ABIE40_RS30610 at 813.518 kb on + strand, within ABIE40_RS30610 at 813.519 kb on - strand, within ABIE40_RS30610 at 813.519 kb on - strand, within ABIE40_RS30610 at 813.523 kb on - strand, within ABIE40_RS30610 at 813.523 kb on - strand, within ABIE40_RS30610 at 813.523 kb on - strand, within ABIE40_RS30610 at 813.656 kb on - strand, within ABIE40_RS30610 at 813.657 kb on + strand, within ABIE40_RS30610 at 813.677 kb on + strand, within ABIE40_RS30610 at 813.723 kb on + strand, within ABIE40_RS30610 at 813.723 kb on + strand, within ABIE40_RS30610 at 813.724 kb on - strand, within ABIE40_RS30610 at 813.724 kb on - strand, within ABIE40_RS30610 at 813.724 kb on - strand, within ABIE40_RS30610 at 813.733 kb on + strand, within ABIE40_RS30610 at 813.889 kb on - strand, within ABIE40_RS30610 at 813.889 kb on - strand, within ABIE40_RS30610 at 813.908 kb on + strand, within ABIE40_RS30610 at 813.908 kb on + strand, within ABIE40_RS30610 at 813.908 kb on + strand, within ABIE40_RS30610 at 813.908 kb on + strand, within ABIE40_RS30610 at 813.909 kb on - strand, within ABIE40_RS30610 at 813.909 kb on - strand, within ABIE40_RS30610 at 813.918 kb on + strand, within ABIE40_RS30610 at 813.919 kb on - strand, within ABIE40_RS30610 at 813.919 kb on - strand, within ABIE40_RS30610 at 813.919 kb on - strand, within ABIE40_RS30610 at 813.919 kb on - strand, within ABIE40_RS30610 at 813.920 kb on - strand, within ABIE40_RS30610 at 814.035 kb on + strand at 814.036 kb on - strand at 814.065 kb on + strand at 814.065 kb on + strand at 814.065 kb on + strand at 814.066 kb on - strand at 814.066 kb on - strand at 814.066 kb on - strand at 814.113 kb on + strand at 814.114 kb on - strand at 814.123 kb on - strand at 814.288 kb on - strand at 814.409 kb on - strand at 814.409 kb on - strand at 814.432 kb on + strand at 814.463 kb on + strand at 814.507 kb on + strand, within ABIE40_RS30615 at 814.508 kb on - strand, within ABIE40_RS30615 at 814.508 kb on - strand, within ABIE40_RS30615 at 814.508 kb on - strand, within ABIE40_RS30615 at 814.508 kb on - strand, within ABIE40_RS30615 at 814.508 kb on - strand, within ABIE40_RS30615 at 814.575 kb on - strand, within ABIE40_RS30615 at 814.629 kb on - strand, within ABIE40_RS30615 at 814.639 kb on - strand, within ABIE40_RS30615 at 814.701 kb on + strand, within ABIE40_RS30615 at 814.702 kb on - strand, within ABIE40_RS30615 at 814.790 kb on + strand, within ABIE40_RS30615 at 814.790 kb on + strand, within ABIE40_RS30615 at 814.790 kb on + strand, within ABIE40_RS30615 at 814.791 kb on - strand, within ABIE40_RS30615 at 814.998 kb on - strand, within ABIE40_RS30615 at 815.032 kb on + strand, within ABIE40_RS30615 at 815.032 kb on + strand, within ABIE40_RS30615 at 815.033 kb on - strand, within ABIE40_RS30615 at 815.092 kb on + strand, within ABIE40_RS30615 at 815.092 kb on + strand, within ABIE40_RS30615 at 815.093 kb on - strand, within ABIE40_RS30615 at 815.102 kb on - strand, within ABIE40_RS30615 at 815.233 kb on + strand, within ABIE40_RS30615 at 815.233 kb on + strand, within ABIE40_RS30615 at 815.233 kb on + strand, within ABIE40_RS30615 at 815.397 kb on + strand at 815.397 kb on + strand at 815.397 kb on + strand at 815.397 kb on + strand at 815.397 kb on + strand at 815.397 kb on + strand at 815.398 kb on - strand at 815.398 kb on - strand at 815.398 kb on - strand at 815.398 kb on - strand at 815.398 kb on - strand at 815.648 kb on + strand, within ABIE40_RS30620 at 815.649 kb on - strand, within ABIE40_RS30620 at 815.664 kb on - strand, within ABIE40_RS30620 at 815.664 kb on - strand, within ABIE40_RS30620 at 815.664 kb on - strand, within ABIE40_RS30620 at 815.816 kb on + strand at 815.816 kb on + strand at 815.817 kb on - strand at 815.817 kb on - strand at 815.894 kb on + strand, within ABIE40_RS30625 at 815.894 kb on + strand, within ABIE40_RS30625 at 815.895 kb on - strand, within ABIE40_RS30625 at 815.901 kb on - strand, within ABIE40_RS30625 at 815.976 kb on - strand, within ABIE40_RS30625 at 816.041 kb on + strand, within ABIE40_RS30625 at 816.042 kb on - strand, within ABIE40_RS30625 at 816.237 kb on - strand, within ABIE40_RS30625 at 816.258 kb on + strand, within ABIE40_RS30625 at 816.382 kb on + strand at 816.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 813,434 + ABIE40_RS30610 0.42 -0.5 813,434 + ABIE40_RS30610 0.42 -0.3 813,518 + ABIE40_RS30610 0.49 +1.2 813,518 + ABIE40_RS30610 0.49 -0.2 813,519 - ABIE40_RS30610 0.49 +0.5 813,519 - ABIE40_RS30610 0.49 +0.2 813,523 - ABIE40_RS30610 0.50 +0.2 813,523 - ABIE40_RS30610 0.50 -0.1 813,523 - ABIE40_RS30610 0.50 +0.1 813,656 - ABIE40_RS30610 0.60 -0.4 813,657 + ABIE40_RS30610 0.61 +0.1 813,677 + ABIE40_RS30610 0.62 -0.6 813,723 + ABIE40_RS30610 0.66 -0.9 813,723 + ABIE40_RS30610 0.66 +1.0 813,724 - ABIE40_RS30610 0.66 -0.6 813,724 - ABIE40_RS30610 0.66 +0.5 813,724 - ABIE40_RS30610 0.66 +0.2 813,733 + ABIE40_RS30610 0.67 -0.7 813,889 - ABIE40_RS30610 0.80 +1.4 813,889 - ABIE40_RS30610 0.80 +0.4 813,908 + ABIE40_RS30610 0.81 +0.5 813,908 + ABIE40_RS30610 0.81 -0.6 813,908 + ABIE40_RS30610 0.81 +0.8 813,908 + ABIE40_RS30610 0.81 +0.6 813,909 - ABIE40_RS30610 0.81 -1.0 813,909 - ABIE40_RS30610 0.81 -2.5 813,918 + ABIE40_RS30610 0.82 +0.5 813,919 - ABIE40_RS30610 0.82 -0.5 813,919 - ABIE40_RS30610 0.82 +0.3 813,919 - ABIE40_RS30610 0.82 +1.1 813,919 - ABIE40_RS30610 0.82 -1.9 813,920 - ABIE40_RS30610 0.82 +0.5 814,035 + -0.7 814,036 - -2.0 814,065 + -0.3 814,065 + -2.9 814,065 + -1.9 814,066 - -0.0 814,066 - +2.8 814,066 - -0.4 814,113 + +0.1 814,114 - +2.1 814,123 - -0.7 814,288 - -0.5 814,409 - -0.0 814,409 - +1.0 814,432 + +0.6 814,463 + -0.4 814,507 + ABIE40_RS30615 0.10 +0.2 814,508 - ABIE40_RS30615 0.10 -0.9 814,508 - ABIE40_RS30615 0.10 -1.6 814,508 - ABIE40_RS30615 0.10 +0.2 814,508 - ABIE40_RS30615 0.10 +1.0 814,508 - ABIE40_RS30615 0.10 +0.1 814,575 - ABIE40_RS30615 0.17 -0.6 814,629 - ABIE40_RS30615 0.22 +0.0 814,639 - ABIE40_RS30615 0.23 -0.5 814,701 + ABIE40_RS30615 0.30 -0.3 814,702 - ABIE40_RS30615 0.30 -0.7 814,790 + ABIE40_RS30615 0.39 -1.5 814,790 + ABIE40_RS30615 0.39 -0.5 814,790 + ABIE40_RS30615 0.39 -0.9 814,791 - ABIE40_RS30615 0.39 -0.7 814,998 - ABIE40_RS30615 0.60 -1.6 815,032 + ABIE40_RS30615 0.63 +0.2 815,032 + ABIE40_RS30615 0.63 +0.4 815,033 - ABIE40_RS30615 0.63 -1.9 815,092 + ABIE40_RS30615 0.69 -1.7 815,092 + ABIE40_RS30615 0.69 -0.5 815,093 - ABIE40_RS30615 0.69 +0.6 815,102 - ABIE40_RS30615 0.70 -1.3 815,233 + ABIE40_RS30615 0.83 -1.2 815,233 + ABIE40_RS30615 0.83 +1.1 815,233 + ABIE40_RS30615 0.83 -1.4 815,397 + +1.3 815,397 + +0.5 815,397 + -0.3 815,397 + +1.8 815,397 + +0.4 815,397 + -0.9 815,398 - -0.3 815,398 - -0.8 815,398 - -0.2 815,398 - +0.5 815,398 - +1.0 815,648 + ABIE40_RS30620 0.60 +0.6 815,649 - ABIE40_RS30620 0.61 -0.2 815,664 - ABIE40_RS30620 0.64 -0.7 815,664 - ABIE40_RS30620 0.64 -1.3 815,664 - ABIE40_RS30620 0.64 -1.0 815,816 + -0.7 815,816 + +0.7 815,817 - -0.4 815,817 - -1.0 815,894 + ABIE40_RS30625 0.16 -0.3 815,894 + ABIE40_RS30625 0.16 -0.2 815,895 - ABIE40_RS30625 0.16 -2.9 815,901 - ABIE40_RS30625 0.17 +0.8 815,976 - ABIE40_RS30625 0.31 +0.1 816,041 + ABIE40_RS30625 0.43 -1.9 816,042 - ABIE40_RS30625 0.43 -0.2 816,237 - ABIE40_RS30625 0.78 -1.5 816,258 + ABIE40_RS30625 0.82 -0.8 816,382 + +1.3 816,382 + +0.8
Or see this region's nucleotide sequence