Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25180

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS25175 and ABIE40_RS25180 are separated by 95 nucleotidesABIE40_RS25180 and ABIE40_RS25185 are separated by 59 nucleotides ABIE40_RS25175: ABIE40_RS25175 - substrate-binding domain-containing protein, at 1,204,560 to 1,205,603 _RS25175 ABIE40_RS25180: ABIE40_RS25180 - bifunctional aldolase/short-chain dehydrogenase, at 1,205,699 to 1,207,753 _RS25180 ABIE40_RS25185: ABIE40_RS25185 - sugar-binding transcriptional regulator, at 1,207,813 to 1,208,790 _RS25185 Position (kb) 1205 1206 1207 1208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1204.699 kb on - strand, within ABIE40_RS25175at 1204.699 kb on - strand, within ABIE40_RS25175at 1204.699 kb on - strand, within ABIE40_RS25175at 1204.699 kb on - strand, within ABIE40_RS25175at 1204.699 kb on - strand, within ABIE40_RS25175at 1204.728 kb on + strand, within ABIE40_RS25175at 1204.729 kb on - strand, within ABIE40_RS25175at 1204.817 kb on + strand, within ABIE40_RS25175at 1204.818 kb on - strand, within ABIE40_RS25175at 1205.053 kb on - strand, within ABIE40_RS25175at 1205.058 kb on + strand, within ABIE40_RS25175at 1205.058 kb on + strand, within ABIE40_RS25175at 1205.059 kb on - strand, within ABIE40_RS25175at 1205.059 kb on - strand, within ABIE40_RS25175at 1205.059 kb on - strand, within ABIE40_RS25175at 1205.059 kb on - strand, within ABIE40_RS25175at 1205.122 kb on - strand, within ABIE40_RS25175at 1205.221 kb on - strand, within ABIE40_RS25175at 1205.223 kb on - strand, within ABIE40_RS25175at 1205.244 kb on + strand, within ABIE40_RS25175at 1205.324 kb on + strand, within ABIE40_RS25175at 1205.324 kb on + strand, within ABIE40_RS25175at 1205.324 kb on + strand, within ABIE40_RS25175at 1205.325 kb on - strand, within ABIE40_RS25175at 1205.325 kb on - strand, within ABIE40_RS25175at 1205.325 kb on - strand, within ABIE40_RS25175at 1205.326 kb on + strand, within ABIE40_RS25175at 1205.326 kb on + strand, within ABIE40_RS25175at 1205.327 kb on - strand, within ABIE40_RS25175at 1205.327 kb on - strand, within ABIE40_RS25175at 1205.327 kb on - strand, within ABIE40_RS25175at 1205.327 kb on - strand, within ABIE40_RS25175at 1205.327 kb on - strand, within ABIE40_RS25175at 1205.617 kb on - strandat 1205.690 kb on + strandat 1205.719 kb on + strandat 1205.720 kb on - strandat 1205.807 kb on + strandat 1205.808 kb on - strandat 1205.838 kb on + strandat 1205.838 kb on + strandat 1205.838 kb on + strandat 1205.839 kb on - strandat 1205.912 kb on - strand, within ABIE40_RS25180at 1205.912 kb on - strand, within ABIE40_RS25180at 1205.912 kb on - strand, within ABIE40_RS25180at 1205.968 kb on - strand, within ABIE40_RS25180at 1205.968 kb on - strand, within ABIE40_RS25180at 1205.968 kb on - strand, within ABIE40_RS25180at 1206.221 kb on - strand, within ABIE40_RS25180at 1206.286 kb on + strand, within ABIE40_RS25180at 1206.310 kb on + strand, within ABIE40_RS25180at 1206.311 kb on - strand, within ABIE40_RS25180at 1206.415 kb on + strand, within ABIE40_RS25180at 1206.415 kb on + strand, within ABIE40_RS25180at 1206.416 kb on - strand, within ABIE40_RS25180at 1206.729 kb on + strand, within ABIE40_RS25180at 1206.773 kb on + strand, within ABIE40_RS25180at 1206.773 kb on + strand, within ABIE40_RS25180at 1206.773 kb on + strand, within ABIE40_RS25180at 1206.773 kb on + strand, within ABIE40_RS25180at 1206.774 kb on - strand, within ABIE40_RS25180at 1206.783 kb on + strand, within ABIE40_RS25180at 1206.783 kb on + strand, within ABIE40_RS25180at 1206.784 kb on - strand, within ABIE40_RS25180at 1206.784 kb on - strand, within ABIE40_RS25180at 1206.880 kb on + strand, within ABIE40_RS25180at 1206.954 kb on + strand, within ABIE40_RS25180at 1206.954 kb on + strand, within ABIE40_RS25180at 1207.077 kb on + strand, within ABIE40_RS25180at 1207.077 kb on + strand, within ABIE40_RS25180at 1207.077 kb on + strand, within ABIE40_RS25180at 1207.077 kb on + strand, within ABIE40_RS25180at 1207.077 kb on + strand, within ABIE40_RS25180at 1207.077 kb on + strand, within ABIE40_RS25180at 1207.077 kb on + strand, within ABIE40_RS25180at 1207.078 kb on - strand, within ABIE40_RS25180at 1207.078 kb on - strand, within ABIE40_RS25180at 1207.098 kb on + strand, within ABIE40_RS25180at 1207.098 kb on + strand, within ABIE40_RS25180at 1207.099 kb on - strand, within ABIE40_RS25180at 1207.240 kb on + strand, within ABIE40_RS25180at 1207.240 kb on + strand, within ABIE40_RS25180at 1207.240 kb on + strand, within ABIE40_RS25180at 1207.240 kb on + strand, within ABIE40_RS25180at 1207.241 kb on - strand, within ABIE40_RS25180at 1207.241 kb on - strand, within ABIE40_RS25180at 1207.241 kb on - strand, within ABIE40_RS25180at 1207.241 kb on - strand, within ABIE40_RS25180at 1207.241 kb on - strand, within ABIE40_RS25180at 1207.241 kb on - strand, within ABIE40_RS25180at 1207.242 kb on + strand, within ABIE40_RS25180at 1207.242 kb on + strand, within ABIE40_RS25180at 1207.243 kb on - strand, within ABIE40_RS25180at 1207.243 kb on - strand, within ABIE40_RS25180at 1207.661 kb on - strandat 1207.662 kb on + strandat 1207.662 kb on + strandat 1207.662 kb on + strandat 1207.662 kb on + strandat 1207.662 kb on + strandat 1207.662 kb on + strandat 1207.663 kb on - strandat 1207.663 kb on - strandat 1207.663 kb on - strandat 1207.704 kb on + strandat 1207.704 kb on + strandat 1207.754 kb on + strandat 1207.755 kb on - strandat 1207.755 kb on - strandat 1207.755 kb on - strandat 1207.755 kb on - strandat 1207.770 kb on + strandat 1208.279 kb on + strand, within ABIE40_RS25185at 1208.279 kb on + strand, within ABIE40_RS25185at 1208.280 kb on - strand, within ABIE40_RS25185at 1208.349 kb on - strand, within ABIE40_RS25185at 1208.429 kb on + strand, within ABIE40_RS25185at 1208.429 kb on + strand, within ABIE40_RS25185at 1208.429 kb on + strand, within ABIE40_RS25185at 1208.430 kb on - strand, within ABIE40_RS25185at 1208.430 kb on - strand, within ABIE40_RS25185at 1208.430 kb on - strand, within ABIE40_RS25185at 1208.489 kb on - strand, within ABIE40_RS25185at 1208.489 kb on - strand, within ABIE40_RS25185at 1208.489 kb on - strand, within ABIE40_RS25185at 1208.563 kb on - strand, within ABIE40_RS25185at 1208.669 kb on + strand, within ABIE40_RS25185at 1208.670 kb on - strand, within ABIE40_RS25185at 1208.738 kb on + strandat 1208.739 kb on - strandat 1208.742 kb on - strandat 1208.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,204,699 - ABIE40_RS25175 0.13 +0.9
1,204,699 - ABIE40_RS25175 0.13 +0.1
1,204,699 - ABIE40_RS25175 0.13 +1.1
1,204,699 - ABIE40_RS25175 0.13 +0.7
1,204,699 - ABIE40_RS25175 0.13 +0.0
1,204,728 + ABIE40_RS25175 0.16 +0.2
1,204,729 - ABIE40_RS25175 0.16 -1.2
1,204,817 + ABIE40_RS25175 0.25 -0.2
1,204,818 - ABIE40_RS25175 0.25 -0.1
1,205,053 - ABIE40_RS25175 0.47 -0.6
1,205,058 + ABIE40_RS25175 0.48 -0.3
1,205,058 + ABIE40_RS25175 0.48 -0.4
1,205,059 - ABIE40_RS25175 0.48 -0.1
1,205,059 - ABIE40_RS25175 0.48 +0.1
1,205,059 - ABIE40_RS25175 0.48 -0.3
1,205,059 - ABIE40_RS25175 0.48 -1.6
1,205,122 - ABIE40_RS25175 0.54 -0.9
1,205,221 - ABIE40_RS25175 0.63 +0.0
1,205,223 - ABIE40_RS25175 0.64 -0.8
1,205,244 + ABIE40_RS25175 0.66 -0.1
1,205,324 + ABIE40_RS25175 0.73 +0.0
1,205,324 + ABIE40_RS25175 0.73 -1.7
1,205,324 + ABIE40_RS25175 0.73 -0.7
1,205,325 - ABIE40_RS25175 0.73 -1.6
1,205,325 - ABIE40_RS25175 0.73 -0.3
1,205,325 - ABIE40_RS25175 0.73 +0.0
1,205,326 + ABIE40_RS25175 0.73 +1.0
1,205,326 + ABIE40_RS25175 0.73 -0.4
1,205,327 - ABIE40_RS25175 0.73 -1.2
1,205,327 - ABIE40_RS25175 0.73 +0.2
1,205,327 - ABIE40_RS25175 0.73 -0.2
1,205,327 - ABIE40_RS25175 0.73 -0.2
1,205,327 - ABIE40_RS25175 0.73 -2.0
1,205,617 - +1.6
1,205,690 + -1.4
1,205,719 + +0.3
1,205,720 - +0.8
1,205,807 + -0.7
1,205,808 - +0.9
1,205,838 + +1.9
1,205,838 + -1.3
1,205,838 + +1.5
1,205,839 - +0.3
1,205,912 - ABIE40_RS25180 0.10 +0.9
1,205,912 - ABIE40_RS25180 0.10 +1.3
1,205,912 - ABIE40_RS25180 0.10 +1.1
1,205,968 - ABIE40_RS25180 0.13 +0.3
1,205,968 - ABIE40_RS25180 0.13 +1.3
1,205,968 - ABIE40_RS25180 0.13 +0.7
1,206,221 - ABIE40_RS25180 0.25 -1.8
1,206,286 + ABIE40_RS25180 0.29 +0.5
1,206,310 + ABIE40_RS25180 0.30 +0.8
1,206,311 - ABIE40_RS25180 0.30 +0.8
1,206,415 + ABIE40_RS25180 0.35 +0.9
1,206,415 + ABIE40_RS25180 0.35 +1.2
1,206,416 - ABIE40_RS25180 0.35 +0.9
1,206,729 + ABIE40_RS25180 0.50 +0.5
1,206,773 + ABIE40_RS25180 0.52 +1.9
1,206,773 + ABIE40_RS25180 0.52 +1.9
1,206,773 + ABIE40_RS25180 0.52 +1.2
1,206,773 + ABIE40_RS25180 0.52 +1.2
1,206,774 - ABIE40_RS25180 0.52 -1.8
1,206,783 + ABIE40_RS25180 0.53 +0.7
1,206,783 + ABIE40_RS25180 0.53 +0.1
1,206,784 - ABIE40_RS25180 0.53 +1.2
1,206,784 - ABIE40_RS25180 0.53 +1.6
1,206,880 + ABIE40_RS25180 0.57 +1.2
1,206,954 + ABIE40_RS25180 0.61 +2.0
1,206,954 + ABIE40_RS25180 0.61 +1.5
1,207,077 + ABIE40_RS25180 0.67 +0.9
1,207,077 + ABIE40_RS25180 0.67 +1.7
1,207,077 + ABIE40_RS25180 0.67 +0.9
1,207,077 + ABIE40_RS25180 0.67 +1.5
1,207,077 + ABIE40_RS25180 0.67 +0.5
1,207,077 + ABIE40_RS25180 0.67 +1.7
1,207,077 + ABIE40_RS25180 0.67 +0.6
1,207,078 - ABIE40_RS25180 0.67 +1.3
1,207,078 - ABIE40_RS25180 0.67 +0.5
1,207,098 + ABIE40_RS25180 0.68 +1.2
1,207,098 + ABIE40_RS25180 0.68 -1.9
1,207,099 - ABIE40_RS25180 0.68 +0.4
1,207,240 + ABIE40_RS25180 0.75 +0.3
1,207,240 + ABIE40_RS25180 0.75 +1.2
1,207,240 + ABIE40_RS25180 0.75 +0.6
1,207,240 + ABIE40_RS25180 0.75 +1.7
1,207,241 - ABIE40_RS25180 0.75 +0.2
1,207,241 - ABIE40_RS25180 0.75 +0.8
1,207,241 - ABIE40_RS25180 0.75 +0.8
1,207,241 - ABIE40_RS25180 0.75 +0.3
1,207,241 - ABIE40_RS25180 0.75 +1.4
1,207,241 - ABIE40_RS25180 0.75 -0.0
1,207,242 + ABIE40_RS25180 0.75 +0.4
1,207,242 + ABIE40_RS25180 0.75 +2.0
1,207,243 - ABIE40_RS25180 0.75 +1.4
1,207,243 - ABIE40_RS25180 0.75 +0.2
1,207,661 - +1.2
1,207,662 + +0.8
1,207,662 + +2.1
1,207,662 + +1.2
1,207,662 + +1.5
1,207,662 + -1.4
1,207,662 + +1.4
1,207,663 - +0.6
1,207,663 - +1.3
1,207,663 - +1.1
1,207,704 + +1.8
1,207,704 + +1.0
1,207,754 + +1.5
1,207,755 - +0.4
1,207,755 - +0.4
1,207,755 - +1.1
1,207,755 - -0.7
1,207,770 + -0.4
1,208,279 + ABIE40_RS25185 0.48 +1.8
1,208,279 + ABIE40_RS25185 0.48 +2.9
1,208,280 - ABIE40_RS25185 0.48 +1.3
1,208,349 - ABIE40_RS25185 0.55 -0.1
1,208,429 + ABIE40_RS25185 0.63 +1.5
1,208,429 + ABIE40_RS25185 0.63 +2.2
1,208,429 + ABIE40_RS25185 0.63 +2.7
1,208,430 - ABIE40_RS25185 0.63 +2.4
1,208,430 - ABIE40_RS25185 0.63 +1.2
1,208,430 - ABIE40_RS25185 0.63 +1.8
1,208,489 - ABIE40_RS25185 0.69 +0.2
1,208,489 - ABIE40_RS25185 0.69 +1.4
1,208,489 - ABIE40_RS25185 0.69 +1.9
1,208,563 - ABIE40_RS25185 0.77 +0.5
1,208,669 + ABIE40_RS25185 0.88 +3.3
1,208,670 - ABIE40_RS25185 0.88 +1.6
1,208,738 + +2.6
1,208,739 - +2.1
1,208,742 - +1.6
1,208,742 - +2.3

Or see this region's nucleotide sequence