Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21600 and ABIE40_RS21605 are separated by 10 nucleotides ABIE40_RS21605 and ABIE40_RS21610 are separated by 62 nucleotides ABIE40_RS21610 and ABIE40_RS21615 are separated by 161 nucleotides
ABIE40_RS21600: ABIE40_RS21600 - sugar ABC transporter ATP-binding protein, at 440,783 to 442,285
_RS21600
ABIE40_RS21605: ABIE40_RS21605 - ABC transporter permease, at 442,296 to 443,258
_RS21605
ABIE40_RS21610: ABIE40_RS21610 - lactoylglutathione lyase, at 443,321 to 443,734
_RS21610
ABIE40_RS21615: ABIE40_RS21615 - FAD-binding oxidoreductase, at 443,896 to 445,341
_RS21615
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 441.423 kb on - strand, within ABIE40_RS21600 at 441.423 kb on - strand, within ABIE40_RS21600 at 441.473 kb on - strand, within ABIE40_RS21600 at 441.524 kb on + strand, within ABIE40_RS21600 at 441.524 kb on + strand, within ABIE40_RS21600 at 441.524 kb on + strand, within ABIE40_RS21600 at 441.524 kb on + strand, within ABIE40_RS21600 at 441.524 kb on + strand, within ABIE40_RS21600 at 441.524 kb on + strand, within ABIE40_RS21600 at 441.525 kb on - strand, within ABIE40_RS21600 at 441.525 kb on - strand, within ABIE40_RS21600 at 441.525 kb on - strand, within ABIE40_RS21600 at 441.525 kb on - strand, within ABIE40_RS21600 at 441.525 kb on - strand, within ABIE40_RS21600 at 441.525 kb on - strand, within ABIE40_RS21600 at 441.525 kb on - strand, within ABIE40_RS21600 at 441.525 kb on - strand, within ABIE40_RS21600 at 441.527 kb on + strand, within ABIE40_RS21600 at 441.527 kb on + strand, within ABIE40_RS21600 at 441.527 kb on + strand, within ABIE40_RS21600 at 441.527 kb on + strand, within ABIE40_RS21600 at 441.528 kb on - strand, within ABIE40_RS21600 at 441.713 kb on - strand, within ABIE40_RS21600 at 441.791 kb on + strand, within ABIE40_RS21600 at 441.791 kb on + strand, within ABIE40_RS21600 at 441.791 kb on + strand, within ABIE40_RS21600 at 441.791 kb on + strand, within ABIE40_RS21600 at 441.792 kb on - strand, within ABIE40_RS21600 at 441.792 kb on - strand, within ABIE40_RS21600 at 441.792 kb on - strand, within ABIE40_RS21600 at 441.792 kb on - strand, within ABIE40_RS21600 at 441.793 kb on + strand, within ABIE40_RS21600 at 441.946 kb on + strand, within ABIE40_RS21600 at 441.947 kb on - strand, within ABIE40_RS21600 at 441.947 kb on - strand, within ABIE40_RS21600 at 441.980 kb on - strand, within ABIE40_RS21600 at 442.008 kb on + strand, within ABIE40_RS21600 at 442.100 kb on + strand, within ABIE40_RS21600 at 442.101 kb on - strand, within ABIE40_RS21600 at 442.101 kb on - strand, within ABIE40_RS21600 at 442.101 kb on - strand, within ABIE40_RS21600 at 442.150 kb on - strand at 442.419 kb on - strand, within ABIE40_RS21605 at 442.419 kb on - strand, within ABIE40_RS21605 at 442.439 kb on + strand, within ABIE40_RS21605 at 442.439 kb on + strand, within ABIE40_RS21605 at 442.439 kb on + strand, within ABIE40_RS21605 at 442.440 kb on - strand, within ABIE40_RS21605 at 442.475 kb on + strand, within ABIE40_RS21605 at 442.475 kb on + strand, within ABIE40_RS21605 at 442.476 kb on - strand, within ABIE40_RS21605 at 442.629 kb on + strand, within ABIE40_RS21605 at 442.629 kb on + strand, within ABIE40_RS21605 at 442.629 kb on + strand, within ABIE40_RS21605 at 442.667 kb on + strand, within ABIE40_RS21605 at 442.667 kb on + strand, within ABIE40_RS21605 at 442.668 kb on - strand, within ABIE40_RS21605 at 442.668 kb on - strand, within ABIE40_RS21605 at 442.668 kb on - strand, within ABIE40_RS21605 at 442.668 kb on - strand, within ABIE40_RS21605 at 442.698 kb on - strand, within ABIE40_RS21605 at 442.698 kb on - strand, within ABIE40_RS21605 at 442.799 kb on + strand, within ABIE40_RS21605 at 442.799 kb on + strand, within ABIE40_RS21605 at 442.799 kb on + strand, within ABIE40_RS21605 at 442.799 kb on + strand, within ABIE40_RS21605 at 442.800 kb on - strand, within ABIE40_RS21605 at 442.800 kb on - strand, within ABIE40_RS21605 at 442.800 kb on - strand, within ABIE40_RS21605 at 442.849 kb on - strand, within ABIE40_RS21605 at 442.849 kb on - strand, within ABIE40_RS21605 at 442.851 kb on - strand, within ABIE40_RS21605 at 442.963 kb on + strand, within ABIE40_RS21605 at 442.964 kb on - strand, within ABIE40_RS21605 at 443.168 kb on + strand at 443.168 kb on + strand at 443.168 kb on + strand at 443.168 kb on + strand at 443.168 kb on + strand at 443.168 kb on + strand at 443.168 kb on + strand at 443.169 kb on - strand at 443.169 kb on - strand at 443.169 kb on - strand at 443.169 kb on - strand at 443.169 kb on - strand at 443.322 kb on + strand at 443.322 kb on + strand at 443.322 kb on + strand at 443.323 kb on - strand at 443.323 kb on - strand at 443.323 kb on - strand at 443.355 kb on + strand at 443.356 kb on - strand at 443.356 kb on - strand at 443.384 kb on - strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.463 kb on + strand, within ABIE40_RS21610 at 443.464 kb on - strand, within ABIE40_RS21610 at 443.464 kb on - strand, within ABIE40_RS21610 at 443.464 kb on - strand, within ABIE40_RS21610 at 443.464 kb on - strand, within ABIE40_RS21610 at 443.464 kb on - strand, within ABIE40_RS21610 at 443.464 kb on - strand, within ABIE40_RS21610 at 443.538 kb on + strand, within ABIE40_RS21610 at 443.539 kb on - strand, within ABIE40_RS21610 at 443.656 kb on - strand, within ABIE40_RS21610 at 443.704 kb on + strand at 443.704 kb on + strand at 443.704 kb on + strand at 443.705 kb on - strand at 443.705 kb on - strand at 443.705 kb on - strand at 443.705 kb on - strand at 443.735 kb on - strand at 443.735 kb on - strand at 443.738 kb on - strand at 443.738 kb on - strand at 443.765 kb on + strand at 443.802 kb on - strand at 443.994 kb on + strand at 443.996 kb on - strand at 443.996 kb on - strand at 443.997 kb on + strand at 443.998 kb on - strand at 443.998 kb on - strand at 444.022 kb on + strand at 444.160 kb on + strand, within ABIE40_RS21615 at 444.161 kb on - strand, within ABIE40_RS21615 at 444.229 kb on + strand, within ABIE40_RS21615 at 444.230 kb on - strand, within ABIE40_RS21615 at 444.230 kb on - strand, within ABIE40_RS21615 at 444.230 kb on - strand, within ABIE40_RS21615
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 441,423 - ABIE40_RS21600 0.43 +0.4 441,423 - ABIE40_RS21600 0.43 +0.1 441,473 - ABIE40_RS21600 0.46 -0.2 441,524 + ABIE40_RS21600 0.49 -0.3 441,524 + ABIE40_RS21600 0.49 -0.3 441,524 + ABIE40_RS21600 0.49 -1.1 441,524 + ABIE40_RS21600 0.49 +0.2 441,524 + ABIE40_RS21600 0.49 -0.0 441,524 + ABIE40_RS21600 0.49 -0.4 441,525 - ABIE40_RS21600 0.49 +0.5 441,525 - ABIE40_RS21600 0.49 +1.6 441,525 - ABIE40_RS21600 0.49 -0.6 441,525 - ABIE40_RS21600 0.49 +2.3 441,525 - ABIE40_RS21600 0.49 +0.1 441,525 - ABIE40_RS21600 0.49 +0.1 441,525 - ABIE40_RS21600 0.49 -0.5 441,525 - ABIE40_RS21600 0.49 +0.2 441,527 + ABIE40_RS21600 0.50 +0.3 441,527 + ABIE40_RS21600 0.50 -0.7 441,527 + ABIE40_RS21600 0.50 -0.6 441,527 + ABIE40_RS21600 0.50 -0.4 441,528 - ABIE40_RS21600 0.50 -2.8 441,713 - ABIE40_RS21600 0.62 -0.7 441,791 + ABIE40_RS21600 0.67 -0.4 441,791 + ABIE40_RS21600 0.67 +0.3 441,791 + ABIE40_RS21600 0.67 -1.0 441,791 + ABIE40_RS21600 0.67 -1.1 441,792 - ABIE40_RS21600 0.67 +0.1 441,792 - ABIE40_RS21600 0.67 -0.7 441,792 - ABIE40_RS21600 0.67 -2.0 441,792 - ABIE40_RS21600 0.67 -0.8 441,793 + ABIE40_RS21600 0.67 +0.8 441,946 + ABIE40_RS21600 0.77 +0.2 441,947 - ABIE40_RS21600 0.77 -0.3 441,947 - ABIE40_RS21600 0.77 +0.2 441,980 - ABIE40_RS21600 0.80 -0.8 442,008 + ABIE40_RS21600 0.82 -0.9 442,100 + ABIE40_RS21600 0.88 -0.7 442,101 - ABIE40_RS21600 0.88 -0.3 442,101 - ABIE40_RS21600 0.88 -0.4 442,101 - ABIE40_RS21600 0.88 -0.1 442,150 - -1.2 442,419 - ABIE40_RS21605 0.13 +0.4 442,419 - ABIE40_RS21605 0.13 -1.0 442,439 + ABIE40_RS21605 0.15 -1.0 442,439 + ABIE40_RS21605 0.15 +0.2 442,439 + ABIE40_RS21605 0.15 -1.7 442,440 - ABIE40_RS21605 0.15 +0.4 442,475 + ABIE40_RS21605 0.19 +0.4 442,475 + ABIE40_RS21605 0.19 -2.1 442,476 - ABIE40_RS21605 0.19 +0.7 442,629 + ABIE40_RS21605 0.35 -0.8 442,629 + ABIE40_RS21605 0.35 +0.8 442,629 + ABIE40_RS21605 0.35 +1.5 442,667 + ABIE40_RS21605 0.39 -0.4 442,667 + ABIE40_RS21605 0.39 -0.7 442,668 - ABIE40_RS21605 0.39 -0.1 442,668 - ABIE40_RS21605 0.39 -0.3 442,668 - ABIE40_RS21605 0.39 +0.4 442,668 - ABIE40_RS21605 0.39 -1.1 442,698 - ABIE40_RS21605 0.42 -1.2 442,698 - ABIE40_RS21605 0.42 -1.9 442,799 + ABIE40_RS21605 0.52 -0.1 442,799 + ABIE40_RS21605 0.52 -0.4 442,799 + ABIE40_RS21605 0.52 +0.1 442,799 + ABIE40_RS21605 0.52 +0.2 442,800 - ABIE40_RS21605 0.52 -0.5 442,800 - ABIE40_RS21605 0.52 +1.2 442,800 - ABIE40_RS21605 0.52 +0.2 442,849 - ABIE40_RS21605 0.57 -1.8 442,849 - ABIE40_RS21605 0.57 -0.2 442,851 - ABIE40_RS21605 0.58 -0.8 442,963 + ABIE40_RS21605 0.69 +0.2 442,964 - ABIE40_RS21605 0.69 -0.3 443,168 + -0.3 443,168 + -1.6 443,168 + -0.5 443,168 + -0.2 443,168 + -1.1 443,168 + -0.3 443,168 + +0.9 443,169 - -0.2 443,169 - +0.4 443,169 - +0.3 443,169 - +0.2 443,169 - -1.2 443,322 + +0.5 443,322 + +0.9 443,322 + +2.3 443,323 - -0.6 443,323 - -0.7 443,323 - +1.7 443,355 + -0.2 443,356 - +0.5 443,356 - +0.6 443,384 - ABIE40_RS21610 0.15 +0.8 443,463 + ABIE40_RS21610 0.34 -0.2 443,463 + ABIE40_RS21610 0.34 -0.3 443,463 + ABIE40_RS21610 0.34 -0.5 443,463 + ABIE40_RS21610 0.34 -1.8 443,463 + ABIE40_RS21610 0.34 -0.5 443,463 + ABIE40_RS21610 0.34 -0.8 443,463 + ABIE40_RS21610 0.34 -0.3 443,463 + ABIE40_RS21610 0.34 +0.1 443,463 + ABIE40_RS21610 0.34 +1.5 443,463 + ABIE40_RS21610 0.34 +0.3 443,463 + ABIE40_RS21610 0.34 -0.1 443,463 + ABIE40_RS21610 0.34 -1.9 443,463 + ABIE40_RS21610 0.34 +0.5 443,463 + ABIE40_RS21610 0.34 +1.0 443,464 - ABIE40_RS21610 0.35 +0.9 443,464 - ABIE40_RS21610 0.35 -0.6 443,464 - ABIE40_RS21610 0.35 -0.2 443,464 - ABIE40_RS21610 0.35 +3.4 443,464 - ABIE40_RS21610 0.35 -1.8 443,464 - ABIE40_RS21610 0.35 +0.5 443,538 + ABIE40_RS21610 0.52 +1.4 443,539 - ABIE40_RS21610 0.53 +1.6 443,656 - ABIE40_RS21610 0.81 -0.6 443,704 + +0.1 443,704 + -0.5 443,704 + -1.6 443,705 - +0.2 443,705 - -0.2 443,705 - +0.5 443,705 - -1.2 443,735 - -0.3 443,735 - -0.2 443,738 - +0.3 443,738 - -0.5 443,765 + +0.5 443,802 - +2.3 443,994 + -1.0 443,996 - +0.7 443,996 - +2.1 443,997 + -0.5 443,998 - +0.9 443,998 - -0.5 444,022 + -2.0 444,160 + ABIE40_RS21615 0.18 +0.9 444,161 - ABIE40_RS21615 0.18 +0.6 444,229 + ABIE40_RS21615 0.23 -0.6 444,230 - ABIE40_RS21615 0.23 +1.4 444,230 - ABIE40_RS21615 0.23 -0.2 444,230 - ABIE40_RS21615 0.23 +1.2
Or see this region's nucleotide sequence