Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20405 and ABIE40_RS20410 are separated by 10 nucleotides ABIE40_RS20410 and ABIE40_RS20415 are separated by 26 nucleotides ABIE40_RS20415 and ABIE40_RS20420 are separated by 135 nucleotides
ABIE40_RS20405: ABIE40_RS20405 - FAD-dependent oxidoreductase, at 185,648 to 186,872
_RS20405
ABIE40_RS20410: ABIE40_RS20410 - MocE family 2Fe-2S type ferredoxin, at 186,883 to 187,197
_RS20410
ABIE40_RS20415: ABIE40_RS20415 - fatty acid desaturase family protein, at 187,224 to 188,309
_RS20415
ABIE40_RS20420: ABIE40_RS20420 - LacI family DNA-binding transcriptional regulator, at 188,445 to 189,473
_RS20420
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.579 kb on + strand, within ABIE40_RS20405 at 186.579 kb on + strand, within ABIE40_RS20405 at 186.580 kb on - strand, within ABIE40_RS20405 at 186.679 kb on - strand, within ABIE40_RS20405 at 186.927 kb on - strand, within ABIE40_RS20410 at 186.927 kb on - strand, within ABIE40_RS20410 at 186.978 kb on - strand, within ABIE40_RS20410 at 186.978 kb on - strand, within ABIE40_RS20410 at 186.978 kb on - strand, within ABIE40_RS20410 at 186.978 kb on - strand, within ABIE40_RS20410 at 186.993 kb on + strand, within ABIE40_RS20410 at 187.103 kb on + strand, within ABIE40_RS20410 at 187.158 kb on + strand, within ABIE40_RS20410 at 187.159 kb on - strand, within ABIE40_RS20410 at 187.197 kb on + strand at 187.197 kb on + strand at 187.197 kb on + strand at 187.198 kb on - strand at 187.198 kb on - strand at 187.198 kb on - strand at 187.214 kb on + strand at 187.215 kb on - strand at 187.225 kb on + strand at 187.267 kb on + strand at 187.268 kb on - strand at 187.306 kb on + strand at 187.306 kb on + strand at 187.306 kb on + strand at 187.306 kb on + strand at 187.307 kb on - strand at 187.354 kb on + strand, within ABIE40_RS20415 at 187.355 kb on - strand, within ABIE40_RS20415 at 187.430 kb on - strand, within ABIE40_RS20415 at 187.430 kb on - strand, within ABIE40_RS20415 at 187.465 kb on + strand, within ABIE40_RS20415 at 187.466 kb on - strand, within ABIE40_RS20415 at 187.466 kb on - strand, within ABIE40_RS20415 at 187.480 kb on + strand, within ABIE40_RS20415 at 187.480 kb on + strand, within ABIE40_RS20415 at 187.481 kb on - strand, within ABIE40_RS20415 at 187.507 kb on + strand, within ABIE40_RS20415 at 187.507 kb on + strand, within ABIE40_RS20415 at 187.508 kb on - strand, within ABIE40_RS20415 at 187.508 kb on - strand, within ABIE40_RS20415 at 187.508 kb on - strand, within ABIE40_RS20415 at 187.647 kb on - strand, within ABIE40_RS20415 at 187.647 kb on - strand, within ABIE40_RS20415 at 187.647 kb on - strand, within ABIE40_RS20415 at 187.647 kb on - strand, within ABIE40_RS20415 at 187.648 kb on + strand, within ABIE40_RS20415 at 187.648 kb on + strand, within ABIE40_RS20415 at 187.649 kb on - strand, within ABIE40_RS20415 at 187.649 kb on - strand, within ABIE40_RS20415 at 187.675 kb on + strand, within ABIE40_RS20415 at 187.675 kb on + strand, within ABIE40_RS20415 at 187.675 kb on + strand, within ABIE40_RS20415 at 187.675 kb on + strand, within ABIE40_RS20415 at 187.676 kb on - strand, within ABIE40_RS20415 at 187.796 kb on - strand, within ABIE40_RS20415 at 187.796 kb on - strand, within ABIE40_RS20415 at 187.967 kb on - strand, within ABIE40_RS20415 at 188.047 kb on + strand, within ABIE40_RS20415 at 188.059 kb on + strand, within ABIE40_RS20415 at 188.060 kb on - strand, within ABIE40_RS20415 at 188.101 kb on + strand, within ABIE40_RS20415 at 188.101 kb on + strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.209 kb on - strand at 188.209 kb on - strand at 188.221 kb on + strand at 188.221 kb on + strand at 188.284 kb on + strand at 188.346 kb on + strand at 188.347 kb on - strand at 188.347 kb on - strand at 188.384 kb on + strand at 188.385 kb on - strand at 188.462 kb on - strand at 188.559 kb on + strand, within ABIE40_RS20420 at 188.676 kb on + strand, within ABIE40_RS20420 at 188.676 kb on + strand, within ABIE40_RS20420 at 188.676 kb on + strand, within ABIE40_RS20420 at 188.676 kb on + strand, within ABIE40_RS20420 at 188.677 kb on - strand, within ABIE40_RS20420 at 188.687 kb on + strand, within ABIE40_RS20420 at 188.937 kb on + strand, within ABIE40_RS20420 at 188.938 kb on - strand, within ABIE40_RS20420 at 188.939 kb on + strand, within ABIE40_RS20420 at 189.012 kb on - strand, within ABIE40_RS20420 at 189.081 kb on + strand, within ABIE40_RS20420 at 189.081 kb on + strand, within ABIE40_RS20420 at 189.081 kb on + strand, within ABIE40_RS20420 at 189.082 kb on - strand, within ABIE40_RS20420 at 189.204 kb on + strand, within ABIE40_RS20420 at 189.204 kb on + strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 186,579 + ABIE40_RS20405 0.76 -0.0 186,579 + ABIE40_RS20405 0.76 -2.6 186,580 - ABIE40_RS20405 0.76 -1.0 186,679 - ABIE40_RS20405 0.84 +1.2 186,927 - ABIE40_RS20410 0.14 -1.4 186,927 - ABIE40_RS20410 0.14 +0.1 186,978 - ABIE40_RS20410 0.30 -2.2 186,978 - ABIE40_RS20410 0.30 +0.3 186,978 - ABIE40_RS20410 0.30 +0.7 186,978 - ABIE40_RS20410 0.30 +0.6 186,993 + ABIE40_RS20410 0.35 +0.3 187,103 + ABIE40_RS20410 0.70 -0.4 187,158 + ABIE40_RS20410 0.87 -1.6 187,159 - ABIE40_RS20410 0.88 -0.1 187,197 + +0.5 187,197 + +0.2 187,197 + -0.5 187,198 - +0.1 187,198 - +0.5 187,198 - -1.2 187,214 + +0.7 187,215 - +0.2 187,225 + +0.5 187,267 + -0.9 187,268 - +0.1 187,306 + -1.7 187,306 + +0.7 187,306 + -2.0 187,306 + +0.4 187,307 - +0.3 187,354 + ABIE40_RS20415 0.12 +0.0 187,355 - ABIE40_RS20415 0.12 +0.7 187,430 - ABIE40_RS20415 0.19 +0.2 187,430 - ABIE40_RS20415 0.19 -0.5 187,465 + ABIE40_RS20415 0.22 +0.7 187,466 - ABIE40_RS20415 0.22 +1.2 187,466 - ABIE40_RS20415 0.22 +0.3 187,480 + ABIE40_RS20415 0.24 -0.0 187,480 + ABIE40_RS20415 0.24 -0.2 187,481 - ABIE40_RS20415 0.24 +0.5 187,507 + ABIE40_RS20415 0.26 +0.6 187,507 + ABIE40_RS20415 0.26 +0.8 187,508 - ABIE40_RS20415 0.26 -1.8 187,508 - ABIE40_RS20415 0.26 -0.6 187,508 - ABIE40_RS20415 0.26 +1.5 187,647 - ABIE40_RS20415 0.39 -0.3 187,647 - ABIE40_RS20415 0.39 -0.8 187,647 - ABIE40_RS20415 0.39 -2.8 187,647 - ABIE40_RS20415 0.39 -0.0 187,648 + ABIE40_RS20415 0.39 +0.1 187,648 + ABIE40_RS20415 0.39 -0.0 187,649 - ABIE40_RS20415 0.39 +0.0 187,649 - ABIE40_RS20415 0.39 -0.4 187,675 + ABIE40_RS20415 0.42 +0.2 187,675 + ABIE40_RS20415 0.42 -0.6 187,675 + ABIE40_RS20415 0.42 +1.2 187,675 + ABIE40_RS20415 0.42 -0.2 187,676 - ABIE40_RS20415 0.42 -0.5 187,796 - ABIE40_RS20415 0.53 -0.5 187,796 - ABIE40_RS20415 0.53 +0.9 187,967 - ABIE40_RS20415 0.68 -0.3 188,047 + ABIE40_RS20415 0.76 -0.7 188,059 + ABIE40_RS20415 0.77 +0.6 188,060 - ABIE40_RS20415 0.77 -1.2 188,101 + ABIE40_RS20415 0.81 +0.4 188,101 + ABIE40_RS20415 0.81 +1.0 188,102 - ABIE40_RS20415 0.81 +0.6 188,102 - ABIE40_RS20415 0.81 +3.1 188,102 - ABIE40_RS20415 0.81 +0.4 188,102 - ABIE40_RS20415 0.81 +0.6 188,102 - ABIE40_RS20415 0.81 -1.5 188,209 - +0.5 188,209 - -0.8 188,221 + -0.8 188,221 + -0.6 188,284 + +0.5 188,346 + -1.1 188,347 - +0.5 188,347 - +0.4 188,384 + -1.2 188,385 - -0.2 188,462 - -0.0 188,559 + ABIE40_RS20420 0.11 -0.0 188,676 + ABIE40_RS20420 0.22 +0.3 188,676 + ABIE40_RS20420 0.22 +1.0 188,676 + ABIE40_RS20420 0.22 -0.4 188,676 + ABIE40_RS20420 0.22 -0.4 188,677 - ABIE40_RS20420 0.23 -1.0 188,687 + ABIE40_RS20420 0.24 -0.2 188,937 + ABIE40_RS20420 0.48 +0.3 188,938 - ABIE40_RS20420 0.48 +0.3 188,939 + ABIE40_RS20420 0.48 -0.4 189,012 - ABIE40_RS20420 0.55 -0.1 189,081 + ABIE40_RS20420 0.62 +0.8 189,081 + ABIE40_RS20420 0.62 +0.2 189,081 + ABIE40_RS20420 0.62 -1.0 189,082 - ABIE40_RS20420 0.62 +1.7 189,204 + ABIE40_RS20420 0.74 -0.4 189,204 + ABIE40_RS20420 0.74 +0.1 189,205 - ABIE40_RS20420 0.74 -2.7 189,205 - ABIE40_RS20420 0.74 +0.2 189,205 - ABIE40_RS20420 0.74 -0.3 189,205 - ABIE40_RS20420 0.74 -1.0 189,205 - ABIE40_RS20420 0.74 +0.6 189,205 - ABIE40_RS20420 0.74 -0.1 189,205 - ABIE40_RS20420 0.74 +0.0
Or see this region's nucleotide sequence