Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08660

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS08655 and ABIE40_RS08660 are separated by 1 nucleotidesABIE40_RS08660 and ABIE40_RS08665 are separated by 10 nucleotidesABIE40_RS08665 and ABIE40_RS08670 are separated by 2 nucleotides ABIE40_RS08655: ABIE40_RS08655 - single-stranded-DNA-specific exonuclease RecJ, at 1,671,539 to 1,673,344 _RS08655 ABIE40_RS08660: ABIE40_RS08660 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,673,346 to 1,674,215 _RS08660 ABIE40_RS08665: ABIE40_RS08665 - dTDP-4-dehydrorhamnose reductase, at 1,674,226 to 1,675,113 _RS08665 ABIE40_RS08670: ABIE40_RS08670 - dTDP-glucose 4,6-dehydratase, at 1,675,116 to 1,676,171 _RS08670 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1673.347 kb on + strandat 1673.347 kb on + strandat 1673.347 kb on + strandat 1673.374 kb on + strandat 1673.375 kb on - strandat 1673.383 kb on + strandat 1673.437 kb on + strand, within ABIE40_RS08660at 1673.437 kb on + strand, within ABIE40_RS08660at 1673.437 kb on + strand, within ABIE40_RS08660at 1673.437 kb on + strand, within ABIE40_RS08660at 1673.437 kb on + strand, within ABIE40_RS08660at 1673.437 kb on + strand, within ABIE40_RS08660at 1673.438 kb on - strand, within ABIE40_RS08660at 1673.438 kb on - strand, within ABIE40_RS08660at 1673.438 kb on - strand, within ABIE40_RS08660at 1673.438 kb on - strand, within ABIE40_RS08660at 1673.438 kb on - strand, within ABIE40_RS08660at 1673.546 kb on + strand, within ABIE40_RS08660at 1673.561 kb on - strand, within ABIE40_RS08660at 1673.605 kb on + strand, within ABIE40_RS08660at 1673.605 kb on + strand, within ABIE40_RS08660at 1673.606 kb on - strand, within ABIE40_RS08660at 1673.606 kb on - strand, within ABIE40_RS08660at 1673.690 kb on - strand, within ABIE40_RS08660at 1673.696 kb on - strand, within ABIE40_RS08660at 1673.696 kb on - strand, within ABIE40_RS08660at 1673.884 kb on + strand, within ABIE40_RS08660at 1673.884 kb on + strand, within ABIE40_RS08660at 1673.884 kb on + strand, within ABIE40_RS08660at 1673.884 kb on + strand, within ABIE40_RS08660at 1673.884 kb on + strand, within ABIE40_RS08660at 1673.885 kb on - strand, within ABIE40_RS08660at 1673.885 kb on - strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.986 kb on + strand, within ABIE40_RS08660at 1673.987 kb on - strand, within ABIE40_RS08660at 1673.987 kb on - strand, within ABIE40_RS08660at 1673.987 kb on - strand, within ABIE40_RS08660at 1673.987 kb on - strand, within ABIE40_RS08660at 1673.987 kb on - strand, within ABIE40_RS08660at 1673.987 kb on - strand, within ABIE40_RS08660at 1673.987 kb on - strand, within ABIE40_RS08660at 1673.987 kb on - strand, within ABIE40_RS08660at 1674.109 kb on + strand, within ABIE40_RS08660at 1674.112 kb on + strand, within ABIE40_RS08660at 1674.112 kb on + strand, within ABIE40_RS08660at 1674.112 kb on + strand, within ABIE40_RS08660at 1674.112 kb on + strand, within ABIE40_RS08660at 1674.112 kb on + strand, within ABIE40_RS08660at 1674.112 kb on + strand, within ABIE40_RS08660at 1674.112 kb on + strand, within ABIE40_RS08660at 1674.113 kb on - strand, within ABIE40_RS08660at 1674.113 kb on - strand, within ABIE40_RS08660at 1674.113 kb on - strand, within ABIE40_RS08660at 1674.113 kb on - strand, within ABIE40_RS08660at 1674.113 kb on - strand, within ABIE40_RS08660at 1674.113 kb on - strand, within ABIE40_RS08660at 1674.113 kb on - strand, within ABIE40_RS08660at 1674.113 kb on - strand, within ABIE40_RS08660at 1674.299 kb on + strandat 1674.299 kb on + strandat 1674.299 kb on + strandat 1674.299 kb on + strandat 1674.299 kb on + strandat 1674.299 kb on + strandat 1674.299 kb on + strandat 1674.300 kb on - strandat 1674.300 kb on - strandat 1674.300 kb on - strandat 1674.362 kb on + strand, within ABIE40_RS08665at 1674.362 kb on + strand, within ABIE40_RS08665at 1674.523 kb on - strand, within ABIE40_RS08665at 1674.659 kb on + strand, within ABIE40_RS08665at 1674.660 kb on - strand, within ABIE40_RS08665at 1674.660 kb on - strand, within ABIE40_RS08665at 1674.660 kb on - strand, within ABIE40_RS08665at 1674.660 kb on - strand, within ABIE40_RS08665at 1674.733 kb on - strand, within ABIE40_RS08665at 1674.733 kb on - strand, within ABIE40_RS08665at 1674.733 kb on - strand, within ABIE40_RS08665at 1674.740 kb on + strand, within ABIE40_RS08665at 1674.746 kb on + strand, within ABIE40_RS08665at 1674.776 kb on + strand, within ABIE40_RS08665at 1674.777 kb on - strand, within ABIE40_RS08665at 1674.777 kb on - strand, within ABIE40_RS08665at 1674.789 kb on + strand, within ABIE40_RS08665at 1674.802 kb on + strand, within ABIE40_RS08665at 1674.802 kb on + strand, within ABIE40_RS08665at 1674.802 kb on + strand, within ABIE40_RS08665at 1674.802 kb on + strand, within ABIE40_RS08665at 1674.802 kb on + strand, within ABIE40_RS08665at 1674.802 kb on + strand, within ABIE40_RS08665at 1674.803 kb on - strand, within ABIE40_RS08665at 1674.803 kb on - strand, within ABIE40_RS08665at 1674.803 kb on - strand, within ABIE40_RS08665at 1674.803 kb on - strand, within ABIE40_RS08665at 1674.806 kb on + strand, within ABIE40_RS08665at 1674.806 kb on + strand, within ABIE40_RS08665at 1674.806 kb on + strand, within ABIE40_RS08665at 1674.807 kb on - strand, within ABIE40_RS08665at 1674.807 kb on - strand, within ABIE40_RS08665at 1674.931 kb on - strand, within ABIE40_RS08665at 1674.933 kb on - strand, within ABIE40_RS08665at 1674.973 kb on + strand, within ABIE40_RS08665at 1675.002 kb on + strand, within ABIE40_RS08665at 1675.002 kb on + strand, within ABIE40_RS08665at 1675.153 kb on + strandat 1675.153 kb on + strandat 1675.153 kb on + strandat 1675.154 kb on - strandat 1675.154 kb on - strandat 1675.154 kb on - strandat 1675.154 kb on - strandat 1675.155 kb on + strandat 1675.198 kb on + strandat 1675.198 kb on + strandat 1675.198 kb on + strandat 1675.199 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,673,347 + +0.8
1,673,347 + -1.5
1,673,347 + +0.2
1,673,374 + -0.0
1,673,375 - +0.5
1,673,383 + +1.3
1,673,437 + ABIE40_RS08660 0.10 -0.3
1,673,437 + ABIE40_RS08660 0.10 -0.1
1,673,437 + ABIE40_RS08660 0.10 +0.0
1,673,437 + ABIE40_RS08660 0.10 -0.1
1,673,437 + ABIE40_RS08660 0.10 -1.2
1,673,437 + ABIE40_RS08660 0.10 -0.5
1,673,438 - ABIE40_RS08660 0.11 -0.2
1,673,438 - ABIE40_RS08660 0.11 +0.6
1,673,438 - ABIE40_RS08660 0.11 -0.7
1,673,438 - ABIE40_RS08660 0.11 +1.8
1,673,438 - ABIE40_RS08660 0.11 +0.1
1,673,546 + ABIE40_RS08660 0.23 -0.2
1,673,561 - ABIE40_RS08660 0.25 +0.5
1,673,605 + ABIE40_RS08660 0.30 -0.1
1,673,605 + ABIE40_RS08660 0.30 +0.5
1,673,606 - ABIE40_RS08660 0.30 -0.9
1,673,606 - ABIE40_RS08660 0.30 -0.2
1,673,690 - ABIE40_RS08660 0.40 +2.4
1,673,696 - ABIE40_RS08660 0.40 -1.2
1,673,696 - ABIE40_RS08660 0.40 +0.4
1,673,884 + ABIE40_RS08660 0.62 -0.9
1,673,884 + ABIE40_RS08660 0.62 -1.9
1,673,884 + ABIE40_RS08660 0.62 -0.7
1,673,884 + ABIE40_RS08660 0.62 -0.7
1,673,884 + ABIE40_RS08660 0.62 -0.2
1,673,885 - ABIE40_RS08660 0.62 +0.2
1,673,885 - ABIE40_RS08660 0.62 +0.1
1,673,986 + ABIE40_RS08660 0.74 -0.1
1,673,986 + ABIE40_RS08660 0.74 -0.5
1,673,986 + ABIE40_RS08660 0.74 -0.4
1,673,986 + ABIE40_RS08660 0.74 +0.0
1,673,986 + ABIE40_RS08660 0.74 -0.8
1,673,986 + ABIE40_RS08660 0.74 -2.0
1,673,986 + ABIE40_RS08660 0.74 -0.8
1,673,986 + ABIE40_RS08660 0.74 -0.4
1,673,986 + ABIE40_RS08660 0.74 -0.9
1,673,986 + ABIE40_RS08660 0.74 -1.2
1,673,986 + ABIE40_RS08660 0.74 -0.3
1,673,987 - ABIE40_RS08660 0.74 +0.7
1,673,987 - ABIE40_RS08660 0.74 -0.7
1,673,987 - ABIE40_RS08660 0.74 +0.1
1,673,987 - ABIE40_RS08660 0.74 +0.5
1,673,987 - ABIE40_RS08660 0.74 -0.4
1,673,987 - ABIE40_RS08660 0.74 +3.1
1,673,987 - ABIE40_RS08660 0.74 -1.9
1,673,987 - ABIE40_RS08660 0.74 +0.4
1,674,109 + ABIE40_RS08660 0.88 +0.6
1,674,112 + ABIE40_RS08660 0.88 +0.5
1,674,112 + ABIE40_RS08660 0.88 +0.8
1,674,112 + ABIE40_RS08660 0.88 +0.1
1,674,112 + ABIE40_RS08660 0.88 +1.9
1,674,112 + ABIE40_RS08660 0.88 -0.0
1,674,112 + ABIE40_RS08660 0.88 +0.0
1,674,112 + ABIE40_RS08660 0.88 +1.2
1,674,113 - ABIE40_RS08660 0.88 -0.9
1,674,113 - ABIE40_RS08660 0.88 -0.0
1,674,113 - ABIE40_RS08660 0.88 +1.1
1,674,113 - ABIE40_RS08660 0.88 +0.3
1,674,113 - ABIE40_RS08660 0.88 +0.3
1,674,113 - ABIE40_RS08660 0.88 -1.2
1,674,113 - ABIE40_RS08660 0.88 -1.0
1,674,113 - ABIE40_RS08660 0.88 +0.1
1,674,299 + -3.5
1,674,299 + -0.8
1,674,299 + -0.1
1,674,299 + -1.0
1,674,299 + +0.3
1,674,299 + +0.9
1,674,299 + +0.1
1,674,300 - +0.8
1,674,300 - -0.2
1,674,300 - +0.3
1,674,362 + ABIE40_RS08665 0.15 -1.8
1,674,362 + ABIE40_RS08665 0.15 -0.4
1,674,523 - ABIE40_RS08665 0.33 -1.0
1,674,659 + ABIE40_RS08665 0.49 -0.7
1,674,660 - ABIE40_RS08665 0.49 +0.0
1,674,660 - ABIE40_RS08665 0.49 +0.5
1,674,660 - ABIE40_RS08665 0.49 -1.3
1,674,660 - ABIE40_RS08665 0.49 +2.8
1,674,733 - ABIE40_RS08665 0.57 -1.2
1,674,733 - ABIE40_RS08665 0.57 -0.8
1,674,733 - ABIE40_RS08665 0.57 +0.2
1,674,740 + ABIE40_RS08665 0.58 +0.6
1,674,746 + ABIE40_RS08665 0.59 +2.4
1,674,776 + ABIE40_RS08665 0.62 +0.6
1,674,777 - ABIE40_RS08665 0.62 -0.5
1,674,777 - ABIE40_RS08665 0.62 -0.7
1,674,789 + ABIE40_RS08665 0.63 -2.6
1,674,802 + ABIE40_RS08665 0.65 -0.6
1,674,802 + ABIE40_RS08665 0.65 +0.8
1,674,802 + ABIE40_RS08665 0.65 +0.3
1,674,802 + ABIE40_RS08665 0.65 +0.5
1,674,802 + ABIE40_RS08665 0.65 +1.2
1,674,802 + ABIE40_RS08665 0.65 -0.2
1,674,803 - ABIE40_RS08665 0.65 -3.6
1,674,803 - ABIE40_RS08665 0.65 -1.3
1,674,803 - ABIE40_RS08665 0.65 -0.8
1,674,803 - ABIE40_RS08665 0.65 -0.5
1,674,806 + ABIE40_RS08665 0.65 -1.1
1,674,806 + ABIE40_RS08665 0.65 -0.3
1,674,806 + ABIE40_RS08665 0.65 +0.4
1,674,807 - ABIE40_RS08665 0.65 -1.0
1,674,807 - ABIE40_RS08665 0.65 -0.9
1,674,931 - ABIE40_RS08665 0.79 -1.3
1,674,933 - ABIE40_RS08665 0.80 -0.0
1,674,973 + ABIE40_RS08665 0.84 -0.2
1,675,002 + ABIE40_RS08665 0.87 +0.6
1,675,002 + ABIE40_RS08665 0.87 +0.3
1,675,153 + -2.7
1,675,153 + +0.2
1,675,153 + +0.8
1,675,154 - -0.8
1,675,154 - -0.9
1,675,154 - -0.2
1,675,154 - -0.5
1,675,155 + -0.2
1,675,198 + -0.5
1,675,198 + -0.5
1,675,198 + -1.0
1,675,199 - +0.1

Or see this region's nucleotide sequence