Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00280 and ABIE40_RS00285 are separated by 22 nucleotides ABIE40_RS00285 and ABIE40_RS00290 are separated by 37 nucleotides ABIE40_RS00290 and ABIE40_RS00295 overlap by 11 nucleotides ABIE40_RS00295 and ABIE40_RS00300 are separated by 57 nucleotides
ABIE40_RS00280: ABIE40_RS00280 - DNA polymerase III subunit gamma/tau, at 56,547 to 58,415
_RS00280
ABIE40_RS00285: ABIE40_RS00285 - YbaB/EbfC family nucleoid-associated protein, at 58,438 to 58,761
_RS00285
ABIE40_RS00290: ABIE40_RS00290 - LysE family translocator, at 58,799 to 59,410
_RS00290
ABIE40_RS00295: ABIE40_RS00295 - MOSC domain-containing protein, at 59,400 to 60,029
_RS00295
ABIE40_RS00300: ABIE40_RS00300 - recombination mediator RecR, at 60,087 to 60,692
_RS00300
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 58.405 kb on + strand at 58.405 kb on + strand at 58.406 kb on - strand at 59.004 kb on - strand, within ABIE40_RS00290 at 59.004 kb on - strand, within ABIE40_RS00290 at 59.004 kb on - strand, within ABIE40_RS00290 at 59.004 kb on - strand, within ABIE40_RS00290 at 59.040 kb on + strand, within ABIE40_RS00290 at 59.042 kb on + strand, within ABIE40_RS00290 at 59.042 kb on + strand, within ABIE40_RS00290 at 59.043 kb on - strand, within ABIE40_RS00290 at 59.043 kb on - strand, within ABIE40_RS00290 at 59.183 kb on + strand, within ABIE40_RS00290 at 59.183 kb on + strand, within ABIE40_RS00290 at 59.183 kb on + strand, within ABIE40_RS00290 at 59.184 kb on - strand, within ABIE40_RS00290 at 59.446 kb on + strand at 59.446 kb on + strand at 59.446 kb on + strand at 59.446 kb on + strand at 59.447 kb on - strand at 59.447 kb on - strand at 59.447 kb on - strand at 59.447 kb on - strand at 59.467 kb on + strand, within ABIE40_RS00295 at 59.577 kb on + strand, within ABIE40_RS00295 at 59.577 kb on + strand, within ABIE40_RS00295 at 59.577 kb on + strand, within ABIE40_RS00295 at 59.578 kb on - strand, within ABIE40_RS00295 at 59.578 kb on - strand, within ABIE40_RS00295 at 59.578 kb on - strand, within ABIE40_RS00295 at 59.578 kb on - strand, within ABIE40_RS00295 at 59.578 kb on - strand, within ABIE40_RS00295 at 59.578 kb on - strand, within ABIE40_RS00295 at 59.605 kb on + strand, within ABIE40_RS00295 at 59.606 kb on - strand, within ABIE40_RS00295 at 59.606 kb on - strand, within ABIE40_RS00295 at 59.633 kb on - strand, within ABIE40_RS00295 at 59.727 kb on - strand, within ABIE40_RS00295 at 59.807 kb on - strand, within ABIE40_RS00295 at 59.856 kb on - strand, within ABIE40_RS00295 at 59.857 kb on + strand, within ABIE40_RS00295 at 59.857 kb on + strand, within ABIE40_RS00295 at 59.857 kb on + strand, within ABIE40_RS00295 at 59.857 kb on + strand, within ABIE40_RS00295 at 59.857 kb on + strand, within ABIE40_RS00295 at 59.857 kb on + strand, within ABIE40_RS00295 at 59.857 kb on + strand, within ABIE40_RS00295 at 59.858 kb on - strand, within ABIE40_RS00295 at 59.858 kb on - strand, within ABIE40_RS00295 at 59.858 kb on - strand, within ABIE40_RS00295 at 59.858 kb on - strand, within ABIE40_RS00295 at 59.884 kb on + strand, within ABIE40_RS00295 at 59.884 kb on + strand, within ABIE40_RS00295 at 59.885 kb on - strand, within ABIE40_RS00295 at 59.974 kb on + strand at 59.974 kb on + strand at 59.974 kb on + strand at 59.975 kb on - strand at 60.022 kb on - strand at 60.068 kb on + strand at 60.069 kb on - strand at 60.069 kb on - strand at 60.069 kb on - strand at 60.069 kb on - strand at 60.069 kb on - strand at 60.069 kb on - strand at 60.069 kb on - strand at 60.075 kb on + strand at 60.075 kb on + strand at 60.076 kb on - strand at 60.246 kb on + strand, within ABIE40_RS00300 at 60.246 kb on + strand, within ABIE40_RS00300 at 60.246 kb on + strand, within ABIE40_RS00300 at 60.246 kb on + strand, within ABIE40_RS00300 at 60.247 kb on - strand, within ABIE40_RS00300 at 60.247 kb on - strand, within ABIE40_RS00300 at 60.247 kb on - strand, within ABIE40_RS00300 at 60.247 kb on - strand, within ABIE40_RS00300 at 60.405 kb on + strand, within ABIE40_RS00300 at 60.406 kb on - strand, within ABIE40_RS00300
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 58,405 + +0.4 58,405 + +0.8 58,406 - -0.8 59,004 - ABIE40_RS00290 0.33 +0.4 59,004 - ABIE40_RS00290 0.33 -0.3 59,004 - ABIE40_RS00290 0.33 +0.0 59,004 - ABIE40_RS00290 0.33 +0.9 59,040 + ABIE40_RS00290 0.39 +1.0 59,042 + ABIE40_RS00290 0.40 -0.2 59,042 + ABIE40_RS00290 0.40 +0.6 59,043 - ABIE40_RS00290 0.40 +0.2 59,043 - ABIE40_RS00290 0.40 +0.6 59,183 + ABIE40_RS00290 0.63 -0.3 59,183 + ABIE40_RS00290 0.63 +1.0 59,183 + ABIE40_RS00290 0.63 -0.6 59,184 - ABIE40_RS00290 0.63 -0.7 59,446 + -1.6 59,446 + +0.1 59,446 + -0.6 59,446 + +0.2 59,447 - -0.3 59,447 - -0.1 59,447 - +2.1 59,447 - +0.4 59,467 + ABIE40_RS00295 0.11 -0.1 59,577 + ABIE40_RS00295 0.28 -2.5 59,577 + ABIE40_RS00295 0.28 -0.0 59,577 + ABIE40_RS00295 0.28 +1.0 59,578 - ABIE40_RS00295 0.28 -0.6 59,578 - ABIE40_RS00295 0.28 +1.0 59,578 - ABIE40_RS00295 0.28 +0.6 59,578 - ABIE40_RS00295 0.28 +0.1 59,578 - ABIE40_RS00295 0.28 +0.3 59,578 - ABIE40_RS00295 0.28 +0.3 59,605 + ABIE40_RS00295 0.33 -0.6 59,606 - ABIE40_RS00295 0.33 +1.2 59,606 - ABIE40_RS00295 0.33 -0.3 59,633 - ABIE40_RS00295 0.37 -0.1 59,727 - ABIE40_RS00295 0.52 +0.2 59,807 - ABIE40_RS00295 0.65 +0.3 59,856 - ABIE40_RS00295 0.72 -0.8 59,857 + ABIE40_RS00295 0.73 +0.2 59,857 + ABIE40_RS00295 0.73 +0.8 59,857 + ABIE40_RS00295 0.73 -1.8 59,857 + ABIE40_RS00295 0.73 -3.0 59,857 + ABIE40_RS00295 0.73 -0.6 59,857 + ABIE40_RS00295 0.73 -0.6 59,857 + ABIE40_RS00295 0.73 +0.0 59,858 - ABIE40_RS00295 0.73 +0.1 59,858 - ABIE40_RS00295 0.73 +0.5 59,858 - ABIE40_RS00295 0.73 +0.2 59,858 - ABIE40_RS00295 0.73 +0.3 59,884 + ABIE40_RS00295 0.77 +1.2 59,884 + ABIE40_RS00295 0.77 +0.3 59,885 - ABIE40_RS00295 0.77 -0.8 59,974 + +0.7 59,974 + -2.0 59,974 + -0.2 59,975 - -0.5 60,022 - +0.6 60,068 + +1.2 60,069 - +1.1 60,069 - -0.0 60,069 - +0.5 60,069 - -0.0 60,069 - -0.3 60,069 - -1.3 60,069 - +0.2 60,075 + -0.3 60,075 + +0.4 60,076 - -0.1 60,246 + ABIE40_RS00300 0.26 -0.9 60,246 + ABIE40_RS00300 0.26 +0.2 60,246 + ABIE40_RS00300 0.26 +1.4 60,246 + ABIE40_RS00300 0.26 -0.3 60,247 - ABIE40_RS00300 0.26 -1.0 60,247 - ABIE40_RS00300 0.26 -0.5 60,247 - ABIE40_RS00300 0.26 +0.2 60,247 - ABIE40_RS00300 0.26 -0.8 60,405 + ABIE40_RS00300 0.52 +0.3 60,406 - ABIE40_RS00300 0.53 +0.3
Or see this region's nucleotide sequence