Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00215

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00205 and ABIE40_RS00210 overlap by 1 nucleotidesABIE40_RS00210 and ABIE40_RS00215 overlap by 4 nucleotidesABIE40_RS00215 and ABIE40_RS00220 are separated by 184 nucleotidesABIE40_RS00220 and ABIE40_RS00225 overlap by 8 nucleotides ABIE40_RS00205: ABIE40_RS00205 - molybdopterin-synthase adenylyltransferase MoeB, at 45,677 to 46,486 _RS00205 ABIE40_RS00210: ABIE40_RS00210 - GNAT family N-acetyltransferase, at 46,486 to 46,956 _RS00210 ABIE40_RS00215: ABIE40_RS00215 - D-glycerate dehydrogenase, at 46,953 to 47,954 _RS00215 ABIE40_RS00220: ABIE40_RS00220 - SH3 domain-containing protein, at 48,139 to 48,678 _RS00220 ABIE40_RS00225: ABIE40_RS00225 - adenosine kinase, at 48,671 to 49,663 _RS00225 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.029 kb on + strand, within ABIE40_RS00205at 46.030 kb on - strand, within ABIE40_RS00205at 46.030 kb on - strand, within ABIE40_RS00205at 46.030 kb on - strand, within ABIE40_RS00205at 46.030 kb on - strand, within ABIE40_RS00205at 46.030 kb on - strand, within ABIE40_RS00205at 46.038 kb on + strand, within ABIE40_RS00205at 46.038 kb on + strand, within ABIE40_RS00205at 46.038 kb on + strand, within ABIE40_RS00205at 46.038 kb on + strand, within ABIE40_RS00205at 46.038 kb on + strand, within ABIE40_RS00205at 46.039 kb on - strand, within ABIE40_RS00205at 46.039 kb on - strand, within ABIE40_RS00205at 46.039 kb on - strand, within ABIE40_RS00205at 46.039 kb on - strand, within ABIE40_RS00205at 46.134 kb on - strand, within ABIE40_RS00205at 46.165 kb on + strand, within ABIE40_RS00205at 46.177 kb on - strand, within ABIE40_RS00205at 46.226 kb on + strand, within ABIE40_RS00205at 46.227 kb on - strand, within ABIE40_RS00205at 46.262 kb on + strand, within ABIE40_RS00205at 46.262 kb on + strand, within ABIE40_RS00205at 46.262 kb on + strand, within ABIE40_RS00205at 46.263 kb on - strand, within ABIE40_RS00205at 46.263 kb on - strand, within ABIE40_RS00205at 46.427 kb on + strandat 46.427 kb on + strandat 46.427 kb on + strandat 46.428 kb on - strandat 46.428 kb on - strandat 46.428 kb on - strandat 46.458 kb on + strandat 46.458 kb on + strandat 46.458 kb on + strandat 46.458 kb on + strandat 46.458 kb on + strandat 46.459 kb on - strandat 46.459 kb on - strandat 46.459 kb on - strandat 46.459 kb on - strandat 46.459 kb on - strandat 46.463 kb on + strandat 46.463 kb on + strandat 46.463 kb on + strandat 46.463 kb on + strandat 46.463 kb on + strandat 46.464 kb on - strandat 46.561 kb on + strand, within ABIE40_RS00210at 46.562 kb on - strand, within ABIE40_RS00210at 46.562 kb on - strand, within ABIE40_RS00210at 46.562 kb on - strand, within ABIE40_RS00210at 46.562 kb on - strand, within ABIE40_RS00210at 46.563 kb on + strand, within ABIE40_RS00210at 46.563 kb on + strand, within ABIE40_RS00210at 46.563 kb on + strand, within ABIE40_RS00210at 46.563 kb on + strand, within ABIE40_RS00210at 46.563 kb on + strand, within ABIE40_RS00210at 46.563 kb on + strand, within ABIE40_RS00210at 46.564 kb on - strand, within ABIE40_RS00210at 46.564 kb on - strand, within ABIE40_RS00210at 46.564 kb on - strand, within ABIE40_RS00210at 46.564 kb on - strand, within ABIE40_RS00210at 46.564 kb on - strand, within ABIE40_RS00210at 46.564 kb on - strand, within ABIE40_RS00210at 46.649 kb on - strand, within ABIE40_RS00210at 46.649 kb on - strand, within ABIE40_RS00210at 46.714 kb on + strand, within ABIE40_RS00210at 46.927 kb on + strandat 46.927 kb on + strandat 46.927 kb on + strandat 46.927 kb on + strandat 46.928 kb on - strandat 46.928 kb on - strandat 47.040 kb on - strandat 47.066 kb on + strand, within ABIE40_RS00215at 47.067 kb on - strand, within ABIE40_RS00215at 47.067 kb on - strand, within ABIE40_RS00215at 47.236 kb on + strand, within ABIE40_RS00215at 47.359 kb on + strand, within ABIE40_RS00215at 47.359 kb on + strand, within ABIE40_RS00215at 47.359 kb on + strand, within ABIE40_RS00215at 47.360 kb on - strand, within ABIE40_RS00215at 47.360 kb on - strand, within ABIE40_RS00215at 47.414 kb on - strand, within ABIE40_RS00215at 47.414 kb on - strand, within ABIE40_RS00215at 47.562 kb on - strand, within ABIE40_RS00215at 47.661 kb on - strand, within ABIE40_RS00215at 47.661 kb on - strand, within ABIE40_RS00215at 47.700 kb on - strand, within ABIE40_RS00215at 47.700 kb on - strand, within ABIE40_RS00215at 47.700 kb on - strand, within ABIE40_RS00215at 47.708 kb on + strand, within ABIE40_RS00215at 47.926 kb on + strandat 47.926 kb on + strandat 47.926 kb on + strandat 47.926 kb on + strandat 47.927 kb on - strandat 47.927 kb on - strandat 47.927 kb on - strandat 47.927 kb on - strandat 47.927 kb on - strandat 48.113 kb on + strandat 48.113 kb on + strandat 48.113 kb on + strandat 48.676 kb on + strandat 48.676 kb on + strandat 48.677 kb on - strandat 48.677 kb on - strandat 48.677 kb on - strandat 48.802 kb on - strand, within ABIE40_RS00225at 48.802 kb on - strand, within ABIE40_RS00225at 48.802 kb on - strand, within ABIE40_RS00225at 48.802 kb on - strand, within ABIE40_RS00225at 48.807 kb on + strand, within ABIE40_RS00225at 48.808 kb on - strand, within ABIE40_RS00225at 48.808 kb on - strand, within ABIE40_RS00225at 48.847 kb on + strand, within ABIE40_RS00225at 48.882 kb on + strand, within ABIE40_RS00225at 48.882 kb on + strand, within ABIE40_RS00225at 48.882 kb on + strand, within ABIE40_RS00225at 48.882 kb on + strand, within ABIE40_RS00225at 48.882 kb on + strand, within ABIE40_RS00225at 48.882 kb on + strand, within ABIE40_RS00225at 48.882 kb on + strand, within ABIE40_RS00225at 48.883 kb on - strand, within ABIE40_RS00225

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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46,029 + ABIE40_RS00205 0.43 -0.1
46,029 + ABIE40_RS00205 0.43 -0.2
46,029 + ABIE40_RS00205 0.43 +0.3
46,029 + ABIE40_RS00205 0.43 -0.3
46,029 + ABIE40_RS00205 0.43 +0.4
46,029 + ABIE40_RS00205 0.43 +0.6
46,029 + ABIE40_RS00205 0.43 +0.5
46,029 + ABIE40_RS00205 0.43 -1.2
46,029 + ABIE40_RS00205 0.43 +0.1
46,029 + ABIE40_RS00205 0.43 +0.3
46,029 + ABIE40_RS00205 0.43 +0.5
46,030 - ABIE40_RS00205 0.44 -1.0
46,030 - ABIE40_RS00205 0.44 +2.1
46,030 - ABIE40_RS00205 0.44 +0.4
46,030 - ABIE40_RS00205 0.44 -0.4
46,030 - ABIE40_RS00205 0.44 +0.3
46,038 + ABIE40_RS00205 0.45 +2.9
46,038 + ABIE40_RS00205 0.45 +1.5
46,038 + ABIE40_RS00205 0.45 +1.0
46,038 + ABIE40_RS00205 0.45 -0.0
46,038 + ABIE40_RS00205 0.45 +0.9
46,039 - ABIE40_RS00205 0.45 -1.3
46,039 - ABIE40_RS00205 0.45 +0.1
46,039 - ABIE40_RS00205 0.45 -0.4
46,039 - ABIE40_RS00205 0.45 +2.2
46,134 - ABIE40_RS00205 0.56 +1.3
46,165 + ABIE40_RS00205 0.60 -0.2
46,177 - ABIE40_RS00205 0.62 +0.2
46,226 + ABIE40_RS00205 0.68 -0.3
46,227 - ABIE40_RS00205 0.68 -0.5
46,262 + ABIE40_RS00205 0.72 +0.7
46,262 + ABIE40_RS00205 0.72 -0.3
46,262 + ABIE40_RS00205 0.72 +0.3
46,263 - ABIE40_RS00205 0.72 +0.1
46,263 - ABIE40_RS00205 0.72 +1.5
46,427 + +0.1
46,427 + +1.3
46,427 + -0.0
46,428 - -2.5
46,428 - -0.6
46,428 - +2.5
46,458 + +0.7
46,458 + -0.5
46,458 + -0.7
46,458 + +0.5
46,458 + +0.1
46,459 - +0.3
46,459 - -0.3
46,459 - +0.3
46,459 - -0.1
46,459 - -0.5
46,463 + +0.4
46,463 + -0.1
46,463 + -0.6
46,463 + +0.5
46,463 + +1.5
46,464 - -0.3
46,561 + ABIE40_RS00210 0.16 +1.0
46,562 - ABIE40_RS00210 0.16 -0.4
46,562 - ABIE40_RS00210 0.16 +1.4
46,562 - ABIE40_RS00210 0.16 -1.2
46,562 - ABIE40_RS00210 0.16 +0.0
46,563 + ABIE40_RS00210 0.16 -1.4
46,563 + ABIE40_RS00210 0.16 -0.4
46,563 + ABIE40_RS00210 0.16 -1.3
46,563 + ABIE40_RS00210 0.16 -0.8
46,563 + ABIE40_RS00210 0.16 -2.5
46,563 + ABIE40_RS00210 0.16 +0.1
46,564 - ABIE40_RS00210 0.17 +1.0
46,564 - ABIE40_RS00210 0.17 +0.1
46,564 - ABIE40_RS00210 0.17 +1.0
46,564 - ABIE40_RS00210 0.17 -0.8
46,564 - ABIE40_RS00210 0.17 -1.0
46,564 - ABIE40_RS00210 0.17 -1.9
46,649 - ABIE40_RS00210 0.35 +0.0
46,649 - ABIE40_RS00210 0.35 -0.9
46,714 + ABIE40_RS00210 0.48 -1.8
46,927 + -0.5
46,927 + -0.3
46,927 + -1.6
46,927 + -1.3
46,928 - -0.7
46,928 - -0.7
47,040 - -1.5
47,066 + ABIE40_RS00215 0.11 -0.1
47,067 - ABIE40_RS00215 0.11 -0.8
47,067 - ABIE40_RS00215 0.11 +0.1
47,236 + ABIE40_RS00215 0.28 -0.2
47,359 + ABIE40_RS00215 0.41 -0.7
47,359 + ABIE40_RS00215 0.41 +0.2
47,359 + ABIE40_RS00215 0.41 -0.1
47,360 - ABIE40_RS00215 0.41 +1.0
47,360 - ABIE40_RS00215 0.41 +2.7
47,414 - ABIE40_RS00215 0.46 +0.0
47,414 - ABIE40_RS00215 0.46 +0.1
47,562 - ABIE40_RS00215 0.61 +0.6
47,661 - ABIE40_RS00215 0.71 -1.0
47,661 - ABIE40_RS00215 0.71 -0.5
47,700 - ABIE40_RS00215 0.75 -0.5
47,700 - ABIE40_RS00215 0.75 +3.4
47,700 - ABIE40_RS00215 0.75 +2.1
47,708 + ABIE40_RS00215 0.75 -2.5
47,926 + +0.0
47,926 + -0.5
47,926 + -0.3
47,926 + +0.4
47,927 - -1.1
47,927 - -0.2
47,927 - +0.1
47,927 - -0.0
47,927 - +0.4
48,113 + +0.9
48,113 + -0.7
48,113 + +0.1
48,676 + -2.2
48,676 + +0.8
48,677 - +0.4
48,677 - -0.0
48,677 - +0.2
48,802 - ABIE40_RS00225 0.13 -1.5
48,802 - ABIE40_RS00225 0.13 -1.6
48,802 - ABIE40_RS00225 0.13 +0.8
48,802 - ABIE40_RS00225 0.13 -0.2
48,807 + ABIE40_RS00225 0.14 -0.5
48,808 - ABIE40_RS00225 0.14 +0.5
48,808 - ABIE40_RS00225 0.14 -2.8
48,847 + ABIE40_RS00225 0.18 +0.4
48,882 + ABIE40_RS00225 0.21 -0.5
48,882 + ABIE40_RS00225 0.21 +0.5
48,882 + ABIE40_RS00225 0.21 +0.5
48,882 + ABIE40_RS00225 0.21 +2.5
48,882 + ABIE40_RS00225 0.21 -0.6
48,882 + ABIE40_RS00225 0.21 +0.3
48,882 + ABIE40_RS00225 0.21 +0.6
48,883 - ABIE40_RS00225 0.21 -0.7

Or see this region's nucleotide sequence