Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00130 and ABIE40_RS00135 are separated by 159 nucleotides ABIE40_RS00135 and ABIE40_RS00140 are separated by 40 nucleotides ABIE40_RS00140 and ABIE40_RS00145 are separated by 22 nucleotides
ABIE40_RS00130: ABIE40_RS00130 - glucuronate isomerase, at 30,077 to 31,492
_RS00130
ABIE40_RS00135: ABIE40_RS00135 - SlyX family protein, at 31,652 to 31,861
_RS00135
ABIE40_RS00140: ABIE40_RS00140 - NAD-dependent succinate-semialdehyde dehydrogenase, at 31,902 to 33,383
_RS00140
ABIE40_RS00145: ABIE40_RS00145 - 4-aminobutyrate--2-oxoglutarate transaminase, at 33,406 to 34,686
_RS00145
Position (kb) 31
32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.906 kb on + strand, within ABIE40_RS00130 at 30.907 kb on - strand, within ABIE40_RS00130 at 30.907 kb on - strand, within ABIE40_RS00130 at 30.907 kb on - strand, within ABIE40_RS00130 at 30.907 kb on - strand, within ABIE40_RS00130 at 31.061 kb on - strand, within ABIE40_RS00130 at 31.063 kb on + strand, within ABIE40_RS00130 at 31.063 kb on + strand, within ABIE40_RS00130 at 31.063 kb on + strand, within ABIE40_RS00130 at 31.063 kb on + strand, within ABIE40_RS00130 at 31.064 kb on - strand, within ABIE40_RS00130 at 31.071 kb on + strand, within ABIE40_RS00130 at 31.071 kb on + strand, within ABIE40_RS00130 at 31.071 kb on + strand, within ABIE40_RS00130 at 31.071 kb on + strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.072 kb on - strand, within ABIE40_RS00130 at 31.073 kb on + strand, within ABIE40_RS00130 at 31.073 kb on + strand, within ABIE40_RS00130 at 31.073 kb on + strand, within ABIE40_RS00130 at 31.074 kb on - strand, within ABIE40_RS00130 at 31.074 kb on - strand, within ABIE40_RS00130 at 31.176 kb on + strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.177 kb on - strand, within ABIE40_RS00130 at 31.282 kb on + strand, within ABIE40_RS00130 at 31.283 kb on - strand, within ABIE40_RS00130 at 31.283 kb on - strand, within ABIE40_RS00130 at 31.283 kb on - strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.293 kb on + strand, within ABIE40_RS00130 at 31.294 kb on - strand, within ABIE40_RS00130 at 31.294 kb on - strand, within ABIE40_RS00130 at 31.294 kb on - strand, within ABIE40_RS00130 at 31.366 kb on + strand at 31.410 kb on + strand at 31.410 kb on + strand at 31.411 kb on - strand at 31.484 kb on + strand at 31.484 kb on + strand at 31.484 kb on + strand at 31.485 kb on - strand at 31.485 kb on - strand at 31.485 kb on - strand at 31.514 kb on + strand at 31.521 kb on + strand at 31.521 kb on + strand at 31.522 kb on - strand at 31.522 kb on - strand at 31.579 kb on + strand at 31.580 kb on - strand at 31.584 kb on + strand at 31.584 kb on + strand at 31.585 kb on - strand at 31.586 kb on + strand at 31.651 kb on + strand at 31.651 kb on + strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.652 kb on - strand at 31.857 kb on - strand at 31.857 kb on - strand at 31.924 kb on + strand at 31.924 kb on + strand at 31.924 kb on + strand at 31.924 kb on + strand at 31.925 kb on - strand at 31.925 kb on - strand at 31.939 kb on + strand at 31.940 kb on - strand at 32.030 kb on + strand at 32.051 kb on - strand, within ABIE40_RS00140 at 32.051 kb on - strand, within ABIE40_RS00140 at 32.104 kb on + strand, within ABIE40_RS00140 at 32.105 kb on - strand, within ABIE40_RS00140 at 32.105 kb on - strand, within ABIE40_RS00140 at 32.105 kb on - strand, within ABIE40_RS00140 at 32.105 kb on - strand, within ABIE40_RS00140 at 32.450 kb on - strand, within ABIE40_RS00140 at 32.467 kb on + strand, within ABIE40_RS00140 at 32.467 kb on + strand, within ABIE40_RS00140 at 32.467 kb on + strand, within ABIE40_RS00140 at 32.468 kb on - strand, within ABIE40_RS00140 at 32.468 kb on - strand, within ABIE40_RS00140 at 32.468 kb on - strand, within ABIE40_RS00140 at 32.468 kb on - strand, within ABIE40_RS00140 at 32.509 kb on + strand, within ABIE40_RS00140 at 32.509 kb on + strand, within ABIE40_RS00140 at 32.510 kb on - strand, within ABIE40_RS00140 at 32.510 kb on - strand, within ABIE40_RS00140 at 32.977 kb on + strand, within ABIE40_RS00140 at 32.977 kb on + strand, within ABIE40_RS00140 at 32.978 kb on - strand, within ABIE40_RS00140 at 32.978 kb on - strand, within ABIE40_RS00140 at 33.001 kb on + strand, within ABIE40_RS00140 at 33.002 kb on - strand, within ABIE40_RS00140 at 33.002 kb on - strand, within ABIE40_RS00140 at 33.012 kb on - strand, within ABIE40_RS00140 at 33.013 kb on + strand, within ABIE40_RS00140 at 33.013 kb on + strand, within ABIE40_RS00140 at 33.013 kb on + strand, within ABIE40_RS00140 at 33.013 kb on + strand, within ABIE40_RS00140 at 33.014 kb on - strand, within ABIE40_RS00140 at 33.014 kb on - strand, within ABIE40_RS00140 at 33.184 kb on + strand, within ABIE40_RS00140 at 33.185 kb on - strand, within ABIE40_RS00140 at 33.185 kb on - strand, within ABIE40_RS00140 at 33.314 kb on + strand at 33.314 kb on + strand at 33.314 kb on + strand at 33.314 kb on + strand at 33.315 kb on - strand at 33.315 kb on - strand at 33.315 kb on - strand at 33.315 kb on - strand at 33.316 kb on + strand at 33.316 kb on + strand at 33.390 kb on + strand at 33.391 kb on - strand at 33.407 kb on + strand at 33.407 kb on + strand at 33.408 kb on - strand at 33.408 kb on - strand at 33.408 kb on - strand at 33.408 kb on - strand at 33.408 kb on - strand at 33.408 kb on - strand at 33.408 kb on - strand at 33.448 kb on - strand at 33.468 kb on + strand at 33.468 kb on + strand at 33.468 kb on + strand at 33.469 kb on - strand at 33.469 kb on - strand at 33.469 kb on - strand at 33.797 kb on + strand, within ABIE40_RS00145 at 33.797 kb on + strand, within ABIE40_RS00145 at 33.797 kb on + strand, within ABIE40_RS00145 at 33.797 kb on + strand, within ABIE40_RS00145 at 33.797 kb on + strand, within ABIE40_RS00145 at 33.797 kb on + strand, within ABIE40_RS00145 at 33.798 kb on - strand, within ABIE40_RS00145 at 33.798 kb on - strand, within ABIE40_RS00145 at 33.798 kb on - strand, within ABIE40_RS00145 at 33.798 kb on - strand, within ABIE40_RS00145 at 34.047 kb on - strand, within ABIE40_RS00145 at 34.226 kb on + strand, within ABIE40_RS00145 at 34.226 kb on + strand, within ABIE40_RS00145 at 34.226 kb on + strand, within ABIE40_RS00145 at 34.226 kb on + strand, within ABIE40_RS00145 at 34.226 kb on + strand, within ABIE40_RS00145 at 34.227 kb on - strand, within ABIE40_RS00145 at 34.227 kb on - strand, within ABIE40_RS00145 at 34.227 kb on - strand, within ABIE40_RS00145
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 30,906 + ABIE40_RS00130 0.59 +0.2 30,906 + ABIE40_RS00130 0.59 +0.1 30,906 + ABIE40_RS00130 0.59 -0.3 30,906 + ABIE40_RS00130 0.59 +0.3 30,906 + ABIE40_RS00130 0.59 -2.2 30,906 + ABIE40_RS00130 0.59 +0.3 30,906 + ABIE40_RS00130 0.59 -0.6 30,907 - ABIE40_RS00130 0.59 +0.1 30,907 - ABIE40_RS00130 0.59 +2.5 30,907 - ABIE40_RS00130 0.59 +0.5 30,907 - ABIE40_RS00130 0.59 +1.5 31,061 - ABIE40_RS00130 0.69 -0.3 31,063 + ABIE40_RS00130 0.70 -0.1 31,063 + ABIE40_RS00130 0.70 +1.3 31,063 + ABIE40_RS00130 0.70 -1.5 31,063 + ABIE40_RS00130 0.70 +2.8 31,064 - ABIE40_RS00130 0.70 -0.3 31,071 + ABIE40_RS00130 0.70 +2.2 31,071 + ABIE40_RS00130 0.70 +0.7 31,071 + ABIE40_RS00130 0.70 -0.5 31,071 + ABIE40_RS00130 0.70 +0.4 31,072 - ABIE40_RS00130 0.70 -1.0 31,072 - ABIE40_RS00130 0.70 -1.0 31,072 - ABIE40_RS00130 0.70 +0.1 31,072 - ABIE40_RS00130 0.70 -0.3 31,072 - ABIE40_RS00130 0.70 -0.3 31,073 + ABIE40_RS00130 0.70 +0.3 31,073 + ABIE40_RS00130 0.70 -0.4 31,073 + ABIE40_RS00130 0.70 +0.2 31,074 - ABIE40_RS00130 0.70 +0.0 31,074 - ABIE40_RS00130 0.70 +1.1 31,176 + ABIE40_RS00130 0.78 -0.5 31,177 - ABIE40_RS00130 0.78 +1.5 31,177 - ABIE40_RS00130 0.78 +1.0 31,177 - ABIE40_RS00130 0.78 +0.3 31,177 - ABIE40_RS00130 0.78 +0.3 31,177 - ABIE40_RS00130 0.78 +0.3 31,282 + ABIE40_RS00130 0.85 -1.6 31,283 - ABIE40_RS00130 0.85 +1.1 31,283 - ABIE40_RS00130 0.85 -0.4 31,283 - ABIE40_RS00130 0.85 +2.4 31,293 + ABIE40_RS00130 0.86 +1.7 31,293 + ABIE40_RS00130 0.86 -0.3 31,293 + ABIE40_RS00130 0.86 -0.1 31,293 + ABIE40_RS00130 0.86 -0.9 31,293 + ABIE40_RS00130 0.86 -1.0 31,293 + ABIE40_RS00130 0.86 +0.2 31,294 - ABIE40_RS00130 0.86 +0.8 31,294 - ABIE40_RS00130 0.86 +0.4 31,294 - ABIE40_RS00130 0.86 -0.7 31,366 + -1.4 31,410 + -0.2 31,410 + -1.0 31,411 - +0.3 31,484 + -0.6 31,484 + -0.6 31,484 + +1.8 31,485 - +0.2 31,485 - +0.9 31,485 - +1.3 31,514 + +0.2 31,521 + +0.6 31,521 + +0.5 31,522 - -0.7 31,522 - +0.2 31,579 + +0.6 31,580 - +1.2 31,584 + +0.1 31,584 + -1.6 31,585 - -0.8 31,586 + +1.0 31,651 + -0.5 31,651 + +0.4 31,652 - +0.3 31,652 - +1.5 31,652 - -1.8 31,652 - +0.1 31,857 - -0.0 31,857 - -0.1 31,924 + +0.9 31,924 + +0.6 31,924 + +0.4 31,924 + -0.5 31,925 - -1.5 31,925 - +0.5 31,939 + +0.4 31,940 - -0.4 32,030 + +0.3 32,051 - ABIE40_RS00140 0.10 +0.5 32,051 - ABIE40_RS00140 0.10 +1.2 32,104 + ABIE40_RS00140 0.14 -0.6 32,105 - ABIE40_RS00140 0.14 +1.5 32,105 - ABIE40_RS00140 0.14 -0.5 32,105 - ABIE40_RS00140 0.14 +0.7 32,105 - ABIE40_RS00140 0.14 +0.0 32,450 - ABIE40_RS00140 0.37 +1.0 32,467 + ABIE40_RS00140 0.38 -0.6 32,467 + ABIE40_RS00140 0.38 +0.0 32,467 + ABIE40_RS00140 0.38 -0.9 32,468 - ABIE40_RS00140 0.38 -0.2 32,468 - ABIE40_RS00140 0.38 +1.3 32,468 - ABIE40_RS00140 0.38 +1.7 32,468 - ABIE40_RS00140 0.38 -1.3 32,509 + ABIE40_RS00140 0.41 -0.5 32,509 + ABIE40_RS00140 0.41 +0.2 32,510 - ABIE40_RS00140 0.41 -1.2 32,510 - ABIE40_RS00140 0.41 +1.5 32,977 + ABIE40_RS00140 0.73 +0.2 32,977 + ABIE40_RS00140 0.73 +0.4 32,978 - ABIE40_RS00140 0.73 -0.2 32,978 - ABIE40_RS00140 0.73 -0.1 33,001 + ABIE40_RS00140 0.74 +0.7 33,002 - ABIE40_RS00140 0.74 -0.8 33,002 - ABIE40_RS00140 0.74 +0.1 33,012 - ABIE40_RS00140 0.75 +0.4 33,013 + ABIE40_RS00140 0.75 -0.7 33,013 + ABIE40_RS00140 0.75 +0.5 33,013 + ABIE40_RS00140 0.75 +2.0 33,013 + ABIE40_RS00140 0.75 -0.0 33,014 - ABIE40_RS00140 0.75 -1.1 33,014 - ABIE40_RS00140 0.75 +0.2 33,184 + ABIE40_RS00140 0.87 -1.6 33,185 - ABIE40_RS00140 0.87 +0.5 33,185 - ABIE40_RS00140 0.87 +0.3 33,314 + +0.7 33,314 + +0.6 33,314 + -0.0 33,314 + -2.5 33,315 - +0.1 33,315 - +0.4 33,315 - +0.2 33,315 - -2.3 33,316 + -0.6 33,316 + -2.3 33,390 + -0.4 33,391 - -0.2 33,407 + +1.7 33,407 + -0.1 33,408 - -0.4 33,408 - +0.7 33,408 - +1.5 33,408 - -0.2 33,408 - -1.2 33,408 - -0.7 33,408 - +0.8 33,448 - -0.6 33,468 + +1.2 33,468 + -0.3 33,468 + -0.6 33,469 - -0.1 33,469 - +0.7 33,469 - +0.2 33,797 + ABIE40_RS00145 0.31 -0.1 33,797 + ABIE40_RS00145 0.31 -0.2 33,797 + ABIE40_RS00145 0.31 -1.6 33,797 + ABIE40_RS00145 0.31 +2.5 33,797 + ABIE40_RS00145 0.31 +0.3 33,797 + ABIE40_RS00145 0.31 +0.7 33,798 - ABIE40_RS00145 0.31 +0.9 33,798 - ABIE40_RS00145 0.31 -0.8 33,798 - ABIE40_RS00145 0.31 -1.0 33,798 - ABIE40_RS00145 0.31 +1.0 34,047 - ABIE40_RS00145 0.50 -1.6 34,226 + ABIE40_RS00145 0.64 +1.5 34,226 + ABIE40_RS00145 0.64 +0.1 34,226 + ABIE40_RS00145 0.64 -0.6 34,226 + ABIE40_RS00145 0.64 -0.0 34,226 + ABIE40_RS00145 0.64 -0.0 34,227 - ABIE40_RS00145 0.64 +0.8 34,227 - ABIE40_RS00145 0.64 +0.2 34,227 - ABIE40_RS00145 0.64 +0.8
Or see this region's nucleotide sequence