Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28680 and ABID97_RS28685 are separated by 141 nucleotides ABID97_RS28685 and ABID97_RS28690 are separated by 220 nucleotides ABID97_RS28690 and ABID97_RS28695 are separated by 15 nucleotides ABID97_RS28695 and ABID97_RS28700 overlap by 4 nucleotides ABID97_RS28700 and ABID97_RS28705 are separated by 25 nucleotides
ABID97_RS28680: ABID97_RS28680 - LysR family transcriptional regulator, at 654,051 to 654,965
_RS28680
ABID97_RS28685: ABID97_RS28685 - RidA family protein, at 655,107 to 655,508
_RS28685
ABID97_RS28690: ABID97_RS28690 - hypothetical protein, at 655,729 to 656,067
_RS28690
ABID97_RS28695: ABID97_RS28695 - VOC family protein, at 656,083 to 656,490
_RS28695
ABID97_RS28700: ABID97_RS28700 - AraC family transcriptional regulator, at 656,487 to 656,972
_RS28700
ABID97_RS28705: ABID97_RS28705 - aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 656,998 to 659,208
_RS28705
Position (kb) 655
656
657 Strain fitness (log2 ratio) -1
0
1 at 654.770 kb on - strand, within ABID97_RS28680 at 654.772 kb on + strand, within ABID97_RS28680 at 654.772 kb on + strand, within ABID97_RS28680 at 655.012 kb on + strand at 655.029 kb on + strand at 655.030 kb on - strand at 655.153 kb on - strand, within ABID97_RS28685 at 655.398 kb on + strand, within ABID97_RS28685 at 655.399 kb on - strand, within ABID97_RS28685 at 655.452 kb on + strand, within ABID97_RS28685 at 655.453 kb on - strand, within ABID97_RS28685 at 655.585 kb on - strand at 655.697 kb on + strand at 655.698 kb on - strand at 655.781 kb on - strand, within ABID97_RS28690 at 655.790 kb on - strand, within ABID97_RS28690 at 655.876 kb on + strand, within ABID97_RS28690 at 655.876 kb on + strand, within ABID97_RS28690 at 655.876 kb on + strand, within ABID97_RS28690 at 655.877 kb on - strand, within ABID97_RS28690 at 655.877 kb on - strand, within ABID97_RS28690 at 655.877 kb on - strand, within ABID97_RS28690 at 655.877 kb on - strand, within ABID97_RS28690 at 655.877 kb on - strand, within ABID97_RS28690 at 655.877 kb on - strand, within ABID97_RS28690 at 655.877 kb on - strand, within ABID97_RS28690 at 655.881 kb on + strand, within ABID97_RS28690 at 656.398 kb on - strand, within ABID97_RS28695 at 656.426 kb on + strand, within ABID97_RS28695 at 656.426 kb on + strand, within ABID97_RS28695 at 656.426 kb on + strand, within ABID97_RS28695 at 656.426 kb on + strand, within ABID97_RS28695 at 656.459 kb on + strand at 656.459 kb on + strand at 656.459 kb on + strand at 656.460 kb on - strand at 656.519 kb on + strand at 656.520 kb on - strand at 656.520 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 654,770 - ABID97_RS28680 0.79 -0.1 654,772 + ABID97_RS28680 0.79 -0.1 654,772 + ABID97_RS28680 0.79 +0.2 655,012 + +0.8 655,029 + +1.2 655,030 - -0.4 655,153 - ABID97_RS28685 0.11 +0.1 655,398 + ABID97_RS28685 0.72 -0.2 655,399 - ABID97_RS28685 0.73 +0.6 655,452 + ABID97_RS28685 0.86 -0.0 655,453 - ABID97_RS28685 0.86 +0.7 655,585 - -0.2 655,697 + +0.7 655,698 - +0.1 655,781 - ABID97_RS28690 0.15 -0.1 655,790 - ABID97_RS28690 0.18 +0.6 655,876 + ABID97_RS28690 0.43 -0.0 655,876 + ABID97_RS28690 0.43 -0.6 655,876 + ABID97_RS28690 0.43 -0.6 655,877 - ABID97_RS28690 0.44 +0.5 655,877 - ABID97_RS28690 0.44 +0.9 655,877 - ABID97_RS28690 0.44 -0.8 655,877 - ABID97_RS28690 0.44 +0.4 655,877 - ABID97_RS28690 0.44 +0.2 655,877 - ABID97_RS28690 0.44 +0.3 655,877 - ABID97_RS28690 0.44 -0.1 655,881 + ABID97_RS28690 0.45 -0.4 656,398 - ABID97_RS28695 0.77 -0.7 656,426 + ABID97_RS28695 0.84 -0.4 656,426 + ABID97_RS28695 0.84 +0.6 656,426 + ABID97_RS28695 0.84 +0.9 656,426 + ABID97_RS28695 0.84 -0.2 656,459 + -0.4 656,459 + -0.3 656,459 + +0.0 656,460 - -0.0 656,519 + -0.6 656,520 - +0.6 656,520 - +0.6
Or see this region's nucleotide sequence