Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27890 and ABID97_RS27895 overlap by 4 nucleotides ABID97_RS27895 and ABID97_RS27900 are separated by 133 nucleotides ABID97_RS27900 and ABID97_RS27905 are separated by 123 nucleotides ABID97_RS27905 and ABID97_RS27910 are separated by 50 nucleotides
ABID97_RS27890: ABID97_RS27890 - AMP-binding protein, at 498,638 to 500,302
_RS27890
ABID97_RS27895: ABID97_RS27895 - AraC family transcriptional regulator, at 500,299 to 501,252
_RS27895
ABID97_RS27900: ABID97_RS27900 - DUF4242 domain-containing protein, at 501,386 to 501,658
_RS27900
ABID97_RS27905: ABID97_RS27905 - hypothetical protein, at 501,782 to 502,123
_RS27905
ABID97_RS27910: ABID97_RS27910 - DUF3422 domain-containing protein, at 502,174 to 503,454
_RS27910
Position (kb) 500
501
502 Strain fitness (log2 ratio) -1
0
1 at 499.398 kb on - strand, within ABID97_RS27890 at 499.804 kb on - strand, within ABID97_RS27890 at 499.956 kb on - strand, within ABID97_RS27890 at 499.956 kb on - strand, within ABID97_RS27890 at 500.864 kb on + strand, within ABID97_RS27895 at 501.314 kb on - strand at 501.366 kb on + strand at 501.367 kb on - strand at 501.540 kb on - strand, within ABID97_RS27900 at 501.540 kb on - strand, within ABID97_RS27900 at 501.549 kb on - strand, within ABID97_RS27900 at 501.627 kb on - strand, within ABID97_RS27900 at 501.799 kb on + strand at 501.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 499,398 - ABID97_RS27890 0.46 +0.3 499,804 - ABID97_RS27890 0.70 -0.7 499,956 - ABID97_RS27890 0.79 -0.1 499,956 - ABID97_RS27890 0.79 -0.1 500,864 + ABID97_RS27895 0.59 -0.3 501,314 - +0.5 501,366 + -0.3 501,367 - +0.3 501,540 - ABID97_RS27900 0.56 -0.6 501,540 - ABID97_RS27900 0.56 -0.4 501,549 - ABID97_RS27900 0.60 +0.2 501,627 - ABID97_RS27900 0.88 -0.1 501,799 + -0.0 501,800 - -0.7
Or see this region's nucleotide sequence