Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25780 and ABID97_RS25785 are separated by 10 nucleotides ABID97_RS25785 and ABID97_RS25790 are separated by 119 nucleotides
ABID97_RS25780: ABID97_RS25780 - NAD-dependent succinate-semialdehyde dehydrogenase, at 76,331 to 77,800
_RS25780
ABID97_RS25785: ABID97_RS25785 - LysR substrate-binding domain-containing protein, at 77,811 to 78,722
_RS25785
ABID97_RS25790: ABID97_RS25790 - alkaline phosphatase family protein, at 78,842 to 80,545
_RS25790
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1 at 77.447 kb on + strand, within ABID97_RS25780 at 77.447 kb on + strand, within ABID97_RS25780 at 77.447 kb on + strand, within ABID97_RS25780 at 77.448 kb on - strand, within ABID97_RS25780 at 77.450 kb on + strand, within ABID97_RS25780 at 77.777 kb on + strand at 77.777 kb on + strand at 78.802 kb on + strand at 79.022 kb on + strand, within ABID97_RS25790 at 79.022 kb on + strand, within ABID97_RS25790 at 79.299 kb on - strand, within ABID97_RS25790 at 79.307 kb on + strand, within ABID97_RS25790 at 79.307 kb on + strand, within ABID97_RS25790 at 79.457 kb on + strand, within ABID97_RS25790 at 79.457 kb on + strand, within ABID97_RS25790 at 79.458 kb on - strand, within ABID97_RS25790 at 79.526 kb on + strand, within ABID97_RS25790 at 79.527 kb on - strand, within ABID97_RS25790 at 79.548 kb on - strand, within ABID97_RS25790 at 79.578 kb on - strand, within ABID97_RS25790 at 79.644 kb on - strand, within ABID97_RS25790 at 79.718 kb on + strand, within ABID97_RS25790 at 79.719 kb on - strand, within ABID97_RS25790
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 77,447 + ABID97_RS25780 0.76 -0.3 77,447 + ABID97_RS25780 0.76 -0.1 77,447 + ABID97_RS25780 0.76 -1.8 77,448 - ABID97_RS25780 0.76 -0.2 77,450 + ABID97_RS25780 0.76 -0.5 77,777 + +0.9 77,777 + -0.3 78,802 + +0.4 79,022 + ABID97_RS25790 0.11 -0.2 79,022 + ABID97_RS25790 0.11 -0.1 79,299 - ABID97_RS25790 0.27 -0.5 79,307 + ABID97_RS25790 0.27 -0.3 79,307 + ABID97_RS25790 0.27 +1.3 79,457 + ABID97_RS25790 0.36 -0.4 79,457 + ABID97_RS25790 0.36 -0.1 79,458 - ABID97_RS25790 0.36 -0.3 79,526 + ABID97_RS25790 0.40 -0.3 79,527 - ABID97_RS25790 0.40 +0.5 79,548 - ABID97_RS25790 0.41 -0.6 79,578 - ABID97_RS25790 0.43 -1.0 79,644 - ABID97_RS25790 0.47 +0.9 79,718 + ABID97_RS25790 0.51 +0.6 79,719 - ABID97_RS25790 0.51 -0.7
Or see this region's nucleotide sequence