Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25665

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25655 and ABID97_RS25660 are separated by 47 nucleotidesABID97_RS25660 and ABID97_RS25665 overlap by 4 nucleotidesABID97_RS25665 and ABID97_RS25670 are separated by 103 nucleotides ABID97_RS25655: ABID97_RS25655 - tripartite tricarboxylate transporter substrate binding protein, at 50,316 to 51,311 _RS25655 ABID97_RS25660: ABID97_RS25660 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 51,359 to 52,276 _RS25660 ABID97_RS25665: ABID97_RS25665 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 52,273 to 53,016 _RS25665 ABID97_RS25670: ABID97_RS25670 - sulfite exporter TauE/SafE family protein, at 53,120 to 53,902 _RS25670 Position (kb) 52 53 54Strain fitness (log2 ratio) -1 0 1at 51.346 kb on - strandat 51.766 kb on - strand, within ABID97_RS25660at 51.835 kb on - strand, within ABID97_RS25660at 53.070 kb on - strandat 53.835 kb on + strandat 53.836 kb on - strandat 53.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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51,346 - +0.5
51,766 - ABID97_RS25660 0.44 -1.6
51,835 - ABID97_RS25660 0.52 -0.5
53,070 - -0.1
53,835 + -1.0
53,836 - +0.9
53,836 - +0.0

Or see this region's nucleotide sequence