Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18545 and ABID97_RS18550 are separated by 293 nucleotides ABID97_RS18550 and ABID97_RS18555 overlap by 4 nucleotides ABID97_RS18555 and ABID97_RS18560 are separated by 82 nucleotides
ABID97_RS18545: ABID97_RS18545 - ABC transporter ATP-binding protein, at 3,822,433 to 3,823,264
_RS18545
ABID97_RS18550: ABID97_RS18550 - acyl-CoA thioesterase domain-containing protein, at 3,823,558 to 3,824,439
_RS18550
ABID97_RS18555: ABID97_RS18555 - NAD(P)H-dependent oxidoreductase, at 3,824,436 to 3,825,188
_RS18555
ABID97_RS18560: ABID97_RS18560 - FAD-dependent oxidoreductase, at 3,825,271 to 3,826,551
_RS18560
Position (kb) 3823
3824
3825 Strain fitness (log2 ratio) -1
0
1 at 3822.593 kb on + strand, within ABID97_RS18545 at 3823.265 kb on - strand at 3823.354 kb on - strand at 3824.618 kb on - strand, within ABID97_RS18555 at 3824.618 kb on - strand, within ABID97_RS18555 at 3824.766 kb on + strand, within ABID97_RS18555 at 3825.169 kb on + strand at 3825.180 kb on + strand at 3825.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 3,822,593 + ABID97_RS18545 0.19 -0.5 3,823,265 - -0.1 3,823,354 - -0.6 3,824,618 - ABID97_RS18555 0.24 -1.1 3,824,618 - ABID97_RS18555 0.24 +0.1 3,824,766 + ABID97_RS18555 0.44 -0.6 3,825,169 + +0.5 3,825,180 + +0.4 3,825,189 - -0.1
Or see this region's nucleotide sequence