Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11515

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11510 and ABID97_RS11515 overlap by 4 nucleotidesABID97_RS11515 and ABID97_RS11520 are separated by 41 nucleotides ABID97_RS11510: ABID97_RS11510 - ATP-binding cassette domain-containing protein, at 2,375,758 to 2,377,446 _RS11510 ABID97_RS11515: ABID97_RS11515 - ATP-binding cassette domain-containing protein, at 2,377,443 to 2,378,138 _RS11515 ABID97_RS11520: ABID97_RS11520 - LysR family transcriptional regulator, at 2,378,180 to 2,379,076 _RS11520 Position (kb) 2377 2378 2379Strain fitness (log2 ratio) -1 0 1at 2377.693 kb on - strand, within ABID97_RS11515at 2378.682 kb on - strand, within ABID97_RS11520at 2378.928 kb on - strand, within ABID97_RS11520

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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2,377,693 - ABID97_RS11515 0.36 -0.4
2,378,682 - ABID97_RS11520 0.56 -0.0
2,378,928 - ABID97_RS11520 0.83 -0.3

Or see this region's nucleotide sequence