Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06150

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06140 and ABID97_RS06145 are separated by 26 nucleotidesABID97_RS06145 and ABID97_RS06150 overlap by 17 nucleotidesABID97_RS06150 and ABID97_RS06155 overlap by 4 nucleotides ABID97_RS06140: ABID97_RS06140 - DUF484 family protein, at 1,294,845 to 1,295,546 _RS06140 ABID97_RS06145: ABID97_RS06145 - YdcF family protein, at 1,295,573 to 1,296,178 _RS06145 ABID97_RS06150: ABID97_RS06150 - tyrosine recombinase XerC, at 1,296,162 to 1,297,187 _RS06150 ABID97_RS06155: ABID97_RS06155 - class I SAM-dependent methyltransferase, at 1,297,184 to 1,298,404 _RS06155 Position (kb) 1296 1297 1298Strain fitness (log2 ratio) -2 -1 0 1 2at 1295.227 kb on + strand, within ABID97_RS06140at 1295.227 kb on + strand, within ABID97_RS06140at 1295.228 kb on - strand, within ABID97_RS06140at 1295.248 kb on - strand, within ABID97_RS06140at 1295.248 kb on - strand, within ABID97_RS06140at 1295.262 kb on + strand, within ABID97_RS06140at 1295.495 kb on - strandat 1295.618 kb on + strandat 1295.619 kb on - strandat 1295.720 kb on + strand, within ABID97_RS06145at 1295.720 kb on + strand, within ABID97_RS06145at 1295.721 kb on - strand, within ABID97_RS06145at 1295.721 kb on - strand, within ABID97_RS06145at 1295.885 kb on + strand, within ABID97_RS06145at 1295.885 kb on + strand, within ABID97_RS06145at 1295.886 kb on - strand, within ABID97_RS06145at 1295.886 kb on - strand, within ABID97_RS06145at 1296.001 kb on + strand, within ABID97_RS06145at 1296.002 kb on + strand, within ABID97_RS06145at 1296.002 kb on + strand, within ABID97_RS06145at 1296.003 kb on - strand, within ABID97_RS06145at 1296.068 kb on + strand, within ABID97_RS06145at 1296.068 kb on + strand, within ABID97_RS06145at 1296.069 kb on - strand, within ABID97_RS06145at 1296.069 kb on - strand, within ABID97_RS06145at 1296.167 kb on + strandat 1296.219 kb on + strandat 1296.228 kb on + strandat 1296.229 kb on - strandat 1296.229 kb on - strandat 1296.273 kb on + strand, within ABID97_RS06150at 1296.273 kb on + strand, within ABID97_RS06150at 1296.274 kb on - strand, within ABID97_RS06150at 1296.435 kb on + strand, within ABID97_RS06150at 1296.435 kb on + strand, within ABID97_RS06150at 1296.436 kb on - strand, within ABID97_RS06150at 1296.561 kb on + strand, within ABID97_RS06150at 1296.562 kb on - strand, within ABID97_RS06150at 1296.562 kb on - strand, within ABID97_RS06150at 1296.621 kb on + strand, within ABID97_RS06150at 1296.622 kb on - strand, within ABID97_RS06150at 1296.622 kb on - strand, within ABID97_RS06150at 1296.622 kb on - strand, within ABID97_RS06150at 1297.068 kb on + strand, within ABID97_RS06150at 1297.068 kb on + strand, within ABID97_RS06150at 1297.068 kb on + strand, within ABID97_RS06150at 1297.068 kb on + strand, within ABID97_RS06150at 1297.068 kb on + strand, within ABID97_RS06150at 1297.069 kb on - strand, within ABID97_RS06150at 1297.069 kb on - strand, within ABID97_RS06150at 1297.069 kb on - strand, within ABID97_RS06150at 1297.069 kb on - strand, within ABID97_RS06150at 1297.069 kb on - strand, within ABID97_RS06150at 1297.104 kb on + strandat 1297.105 kb on - strandat 1297.105 kb on - strandat 1297.105 kb on - strandat 1297.628 kb on + strand, within ABID97_RS06155at 1297.629 kb on - strand, within ABID97_RS06155at 1297.629 kb on - strand, within ABID97_RS06155at 1297.629 kb on - strand, within ABID97_RS06155at 1297.862 kb on + strand, within ABID97_RS06155at 1297.862 kb on + strand, within ABID97_RS06155at 1298.159 kb on + strand, within ABID97_RS06155at 1298.159 kb on + strand, within ABID97_RS06155at 1298.159 kb on + strand, within ABID97_RS06155at 1298.160 kb on - strand, within ABID97_RS06155at 1298.160 kb on - strand, within ABID97_RS06155

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,295,227 + ABID97_RS06140 0.54 +1.1
1,295,227 + ABID97_RS06140 0.54 +2.6
1,295,228 - ABID97_RS06140 0.55 +0.6
1,295,248 - ABID97_RS06140 0.57 -0.2
1,295,248 - ABID97_RS06140 0.57 +0.8
1,295,262 + ABID97_RS06140 0.59 +1.2
1,295,495 - +1.3
1,295,618 + -0.2
1,295,619 - +0.4
1,295,720 + ABID97_RS06145 0.24 -0.3
1,295,720 + ABID97_RS06145 0.24 -0.0
1,295,721 - ABID97_RS06145 0.24 +0.5
1,295,721 - ABID97_RS06145 0.24 +0.3
1,295,885 + ABID97_RS06145 0.51 +0.2
1,295,885 + ABID97_RS06145 0.51 +0.4
1,295,886 - ABID97_RS06145 0.52 +0.8
1,295,886 - ABID97_RS06145 0.52 +0.3
1,296,001 + ABID97_RS06145 0.71 -0.3
1,296,002 + ABID97_RS06145 0.71 -2.5
1,296,002 + ABID97_RS06145 0.71 +0.0
1,296,003 - ABID97_RS06145 0.71 +0.0
1,296,068 + ABID97_RS06145 0.82 +0.4
1,296,068 + ABID97_RS06145 0.82 +0.9
1,296,069 - ABID97_RS06145 0.82 +0.9
1,296,069 - ABID97_RS06145 0.82 -0.3
1,296,167 + +1.0
1,296,219 + -1.1
1,296,228 + +0.5
1,296,229 - -0.3
1,296,229 - -1.7
1,296,273 + ABID97_RS06150 0.11 +0.2
1,296,273 + ABID97_RS06150 0.11 +0.1
1,296,274 - ABID97_RS06150 0.11 -1.0
1,296,435 + ABID97_RS06150 0.27 +0.8
1,296,435 + ABID97_RS06150 0.27 -0.2
1,296,436 - ABID97_RS06150 0.27 -0.4
1,296,561 + ABID97_RS06150 0.39 +0.4
1,296,562 - ABID97_RS06150 0.39 -1.1
1,296,562 - ABID97_RS06150 0.39 -0.5
1,296,621 + ABID97_RS06150 0.45 -0.0
1,296,622 - ABID97_RS06150 0.45 -1.2
1,296,622 - ABID97_RS06150 0.45 -0.2
1,296,622 - ABID97_RS06150 0.45 -1.0
1,297,068 + ABID97_RS06150 0.88 +0.8
1,297,068 + ABID97_RS06150 0.88 -2.4
1,297,068 + ABID97_RS06150 0.88 -0.8
1,297,068 + ABID97_RS06150 0.88 +0.6
1,297,068 + ABID97_RS06150 0.88 +0.2
1,297,069 - ABID97_RS06150 0.88 -1.9
1,297,069 - ABID97_RS06150 0.88 +0.2
1,297,069 - ABID97_RS06150 0.88 +0.6
1,297,069 - ABID97_RS06150 0.88 +0.5
1,297,069 - ABID97_RS06150 0.88 -0.8
1,297,104 + +0.1
1,297,105 - +0.2
1,297,105 - +0.5
1,297,105 - -0.3
1,297,628 + ABID97_RS06155 0.36 +0.6
1,297,629 - ABID97_RS06155 0.36 +1.0
1,297,629 - ABID97_RS06155 0.36 +0.6
1,297,629 - ABID97_RS06155 0.36 +0.3
1,297,862 + ABID97_RS06155 0.56 +0.1
1,297,862 + ABID97_RS06155 0.56 +0.2
1,298,159 + ABID97_RS06155 0.80 +0.5
1,298,159 + ABID97_RS06155 0.80 +0.3
1,298,159 + ABID97_RS06155 0.80 +0.1
1,298,160 - ABID97_RS06155 0.80 +0.1
1,298,160 - ABID97_RS06155 0.80 +0.1

Or see this region's nucleotide sequence