Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02750

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02745 and ABID97_RS02750 are separated by 95 nucleotidesABID97_RS02750 and ABID97_RS02755 are separated by 67 nucleotidesABID97_RS02755 and ABID97_RS02760 overlap by 4 nucleotides ABID97_RS02745: ABID97_RS02745 - flavodoxin family protein, at 559,094 to 560,185 _RS02745 ABID97_RS02750: ABID97_RS02750 - pirin family protein, at 560,281 to 561,180 _RS02750 ABID97_RS02755: ABID97_RS02755 - GNAT family N-acetyltransferase, at 561,248 to 562,000 _RS02755 ABID97_RS02760: ABID97_RS02760 - biosynthetic peptidoglycan transglycosylase, at 561,997 to 563,265 _RS02760 Position (kb) 560 561 562Strain fitness (log2 ratio) -2 -1 0 1at 559.384 kb on - strand, within ABID97_RS02745at 559.596 kb on + strand, within ABID97_RS02745at 559.596 kb on + strand, within ABID97_RS02745at 559.596 kb on + strand, within ABID97_RS02745at 559.597 kb on - strand, within ABID97_RS02745at 559.597 kb on - strand, within ABID97_RS02745at 559.597 kb on - strand, within ABID97_RS02745at 559.709 kb on - strand, within ABID97_RS02745at 559.709 kb on - strand, within ABID97_RS02745at 559.972 kb on - strand, within ABID97_RS02745at 560.019 kb on + strand, within ABID97_RS02745at 560.019 kb on + strand, within ABID97_RS02745at 560.020 kb on - strand, within ABID97_RS02745at 560.197 kb on + strandat 560.197 kb on + strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.257 kb on + strandat 560.257 kb on + strandat 560.258 kb on - strandat 560.360 kb on + strandat 560.537 kb on + strand, within ABID97_RS02750at 560.537 kb on + strand, within ABID97_RS02750at 560.538 kb on - strand, within ABID97_RS02750at 560.736 kb on - strand, within ABID97_RS02750at 560.930 kb on + strand, within ABID97_RS02750at 560.930 kb on + strand, within ABID97_RS02750at 560.930 kb on + strand, within ABID97_RS02750at 560.930 kb on + strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.931 kb on - strand, within ABID97_RS02750at 560.981 kb on + strand, within ABID97_RS02750at 560.982 kb on - strand, within ABID97_RS02750at 560.982 kb on - strand, within ABID97_RS02750at 561.197 kb on + strandat 561.276 kb on + strandat 561.282 kb on + strandat 561.534 kb on + strand, within ABID97_RS02755at 561.534 kb on + strand, within ABID97_RS02755at 561.535 kb on - strand, within ABID97_RS02755at 561.732 kb on + strand, within ABID97_RS02755at 561.732 kb on + strand, within ABID97_RS02755at 561.732 kb on + strand, within ABID97_RS02755at 561.732 kb on + strand, within ABID97_RS02755at 561.732 kb on + strand, within ABID97_RS02755at 561.733 kb on - strand, within ABID97_RS02755at 561.733 kb on - strand, within ABID97_RS02755at 561.733 kb on - strand, within ABID97_RS02755at 561.733 kb on - strand, within ABID97_RS02755at 561.733 kb on - strand, within ABID97_RS02755at 561.733 kb on - strand, within ABID97_RS02755at 561.819 kb on + strand, within ABID97_RS02755at 561.982 kb on + strandat 561.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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559,384 - ABID97_RS02745 0.27 +1.2
559,596 + ABID97_RS02745 0.46 +0.2
559,596 + ABID97_RS02745 0.46 -0.8
559,596 + ABID97_RS02745 0.46 +0.2
559,597 - ABID97_RS02745 0.46 +0.2
559,597 - ABID97_RS02745 0.46 -0.4
559,597 - ABID97_RS02745 0.46 -0.4
559,709 - ABID97_RS02745 0.56 +0.0
559,709 - ABID97_RS02745 0.56 -0.2
559,972 - ABID97_RS02745 0.80 +0.0
560,019 + ABID97_RS02745 0.85 -0.9
560,019 + ABID97_RS02745 0.85 +0.0
560,020 - ABID97_RS02745 0.85 -0.2
560,197 + +0.3
560,197 + -0.0
560,198 - -0.1
560,198 - +0.2
560,198 - -0.6
560,257 + -0.8
560,257 + -1.4
560,258 - +0.5
560,360 + +0.0
560,537 + ABID97_RS02750 0.28 -0.4
560,537 + ABID97_RS02750 0.28 +0.3
560,538 - ABID97_RS02750 0.29 -0.0
560,736 - ABID97_RS02750 0.51 -0.1
560,930 + ABID97_RS02750 0.72 +0.1
560,930 + ABID97_RS02750 0.72 +0.3
560,930 + ABID97_RS02750 0.72 -0.1
560,930 + ABID97_RS02750 0.72 -0.1
560,931 - ABID97_RS02750 0.72 -0.3
560,931 - ABID97_RS02750 0.72 -0.3
560,931 - ABID97_RS02750 0.72 -0.1
560,931 - ABID97_RS02750 0.72 +0.1
560,931 - ABID97_RS02750 0.72 -0.0
560,981 + ABID97_RS02750 0.78 -0.1
560,982 - ABID97_RS02750 0.78 +0.1
560,982 - ABID97_RS02750 0.78 -0.2
561,197 + +0.6
561,276 + -0.1
561,282 + -0.2
561,534 + ABID97_RS02755 0.38 -0.1
561,534 + ABID97_RS02755 0.38 -0.1
561,535 - ABID97_RS02755 0.38 +1.3
561,732 + ABID97_RS02755 0.64 -0.2
561,732 + ABID97_RS02755 0.64 -2.0
561,732 + ABID97_RS02755 0.64 -0.3
561,732 + ABID97_RS02755 0.64 -2.0
561,732 + ABID97_RS02755 0.64 +0.2
561,733 - ABID97_RS02755 0.64 +0.0
561,733 - ABID97_RS02755 0.64 +0.0
561,733 - ABID97_RS02755 0.64 -0.9
561,733 - ABID97_RS02755 0.64 -0.6
561,733 - ABID97_RS02755 0.64 -0.6
561,733 - ABID97_RS02755 0.64 -0.3
561,819 + ABID97_RS02755 0.76 +0.1
561,982 + -0.7
561,983 - -0.5

Or see this region's nucleotide sequence