Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01340 and ABID97_RS01345 are separated by 47 nucleotides ABID97_RS01345 and ABID97_RS01350 are separated by 7 nucleotides ABID97_RS01350 and ABID97_RS01355 are separated by 28 nucleotides ABID97_RS01355 and ABID97_RS01360 are separated by 2 nucleotides ABID97_RS01360 and ABID97_RS01365 are separated by 28 nucleotides
ABID97_RS01340: ABID97_RS01340 - RidA family protein, at 272,480 to 273,049
_RS01340
ABID97_RS01345: ABID97_RS01345 - coniferyl-alcohol dehydrogenase, at 273,097 to 273,900
_RS01345
ABID97_RS01350: ABID97_RS01350 - FAD-dependent oxidoreductase, at 273,908 to 275,296
_RS01350
ABID97_RS01355: ABID97_RS01355 - 4Fe-4S dicluster domain-containing protein, at 275,325 to 275,636
_RS01355
ABID97_RS01360: ABID97_RS01360 - rubredoxin, at 275,639 to 275,809
_RS01360
ABID97_RS01365: ABID97_RS01365 - alpha/beta hydrolase, at 275,838 to 276,776
_RS01365
Position (kb) 273
274
275
276 Strain fitness (log2 ratio) -1
0
1 at 273.318 kb on - strand, within ABID97_RS01345 at 273.419 kb on + strand, within ABID97_RS01345 at 273.420 kb on - strand, within ABID97_RS01345 at 273.913 kb on + strand at 273.913 kb on + strand at 274.228 kb on - strand, within ABID97_RS01350 at 274.228 kb on - strand, within ABID97_RS01350 at 274.926 kb on + strand, within ABID97_RS01350 at 274.953 kb on + strand, within ABID97_RS01350 at 274.953 kb on + strand, within ABID97_RS01350 at 274.954 kb on - strand, within ABID97_RS01350 at 274.954 kb on - strand, within ABID97_RS01350 at 274.954 kb on - strand, within ABID97_RS01350 at 275.170 kb on - strand at 275.256 kb on + strand at 275.257 kb on - strand at 275.470 kb on + strand, within ABID97_RS01355 at 275.470 kb on + strand, within ABID97_RS01355 at 275.470 kb on + strand, within ABID97_RS01355 at 275.471 kb on - strand, within ABID97_RS01355 at 275.471 kb on - strand, within ABID97_RS01355 at 275.536 kb on + strand, within ABID97_RS01355 at 275.536 kb on + strand, within ABID97_RS01355 at 275.766 kb on + strand, within ABID97_RS01360 at 275.767 kb on - strand, within ABID97_RS01360 at 275.791 kb on + strand, within ABID97_RS01360 at 275.791 kb on + strand, within ABID97_RS01360 at 275.793 kb on + strand at 275.793 kb on + strand at 275.793 kb on + strand at 275.793 kb on + strand at 275.793 kb on + strand at 275.793 kb on + strand at 275.793 kb on + strand at 275.794 kb on - strand at 275.794 kb on - strand at 275.794 kb on - strand at 275.794 kb on - strand at 275.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 273,318 - ABID97_RS01345 0.27 +0.3 273,419 + ABID97_RS01345 0.40 -0.8 273,420 - ABID97_RS01345 0.40 -0.3 273,913 + -1.2 273,913 + +0.5 274,228 - ABID97_RS01350 0.23 -0.6 274,228 - ABID97_RS01350 0.23 -0.2 274,926 + ABID97_RS01350 0.73 -0.1 274,953 + ABID97_RS01350 0.75 +0.1 274,953 + ABID97_RS01350 0.75 -0.7 274,954 - ABID97_RS01350 0.75 -0.6 274,954 - ABID97_RS01350 0.75 -0.2 274,954 - ABID97_RS01350 0.75 -0.4 275,170 - -0.2 275,256 + +0.0 275,257 - +0.5 275,470 + ABID97_RS01355 0.46 +0.1 275,470 + ABID97_RS01355 0.46 -0.5 275,470 + ABID97_RS01355 0.46 +0.4 275,471 - ABID97_RS01355 0.47 +0.7 275,471 - ABID97_RS01355 0.47 -0.1 275,536 + ABID97_RS01355 0.68 +0.4 275,536 + ABID97_RS01355 0.68 -0.1 275,766 + ABID97_RS01360 0.74 -0.1 275,767 - ABID97_RS01360 0.75 +0.3 275,791 + ABID97_RS01360 0.89 +0.2 275,791 + ABID97_RS01360 0.89 -0.3 275,793 + -0.3 275,793 + -0.3 275,793 + -0.8 275,793 + +0.8 275,793 + -0.2 275,793 + -0.2 275,793 + -0.2 275,794 - +1.4 275,794 - +0.5 275,794 - -0.7 275,794 - +0.3 275,794 - +0.3
Or see this region's nucleotide sequence