Strain Fitness in Pseudomonas sp. RS175 around PFR28_01193

Experiment: Cytidine carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine carbon 10 mM
1,302,659	+				-1.3
1,302,663	+				-0.1
1,302,663	+				+1.5
1,302,663	+				+0.5
1,302,663	+				-0.4
1,302,663	+				+0.8
1,302,664	-				+0.1
1,302,664	-				-0.7
1,302,664	-				-2.1
1,302,664	-				+0.1
1,302,664	-				+0.4
1,302,664	-				-0.7
1,302,664	-				-1.4
1,302,664	-				-1.7
1,302,689	+				-1.0
1,302,771	+				-1.5
1,302,772	-				+1.0
1,302,832	+				-1.5
1,302,833	-				-0.3
1,302,980	+				+1.1
1,302,988	+				+1.2
1,303,004	+				+0.8
1,303,004	+				-1.0
1,303,012	+				+0.3
1,303,016	-				+0.6
1,303,016	-				-2.2
1,303,016	-				-0.2
1,303,020	-				+0.2
1,303,020	-				+0.4
1,303,027	-				-0.5
1,303,089	-				-1.2
1,303,095	+				+0.7
1,303,096	-				+0.4
1,303,143	+				+0.9
1,303,143	+				-0.1
1,303,144	-				+1.1
1,303,149	+				-0.9
1,303,149	+				+0.5
1,303,149	+				+1.3
1,303,149	+				-1.3
1,303,149	+				+0.1
1,303,150	-				-0.4
1,303,197	+				-2.4
1,303,235	+				+1.2
1,303,235	+				+1.6
1,303,236	-				+0.5
1,303,236	-				+0.4
1,303,245	+				+0.2
1,303,408	-				-0.1
1,303,408	-				-1.7
1,303,451	+				-0.2
1,303,462	+				+0.5
1,303,548	+				-0.2
1,303,548	+				-2.5
1,303,549	-				+2.3
1,303,562	-				+0.3
1,303,592	+		PFR28_01193	0.11	+0.8
1,303,593	-		PFR28_01193	0.11	+0.8
1,303,593	-		PFR28_01193	0.11	-0.1
1,303,723	+		PFR28_01193	0.33	-0.7
1,303,723	+		PFR28_01193	0.33	+0.7
1,303,723	+		PFR28_01193	0.33	-1.2
1,303,723	+		PFR28_01193	0.33	-0.8
1,303,723	+		PFR28_01193	0.33	-0.3
1,303,723	+		PFR28_01193	0.33	+0.2
1,303,724	-		PFR28_01193	0.33	-0.4
1,303,724	-		PFR28_01193	0.33	+0.6
1,303,724	-		PFR28_01193	0.33	-1.8
1,303,724	-		PFR28_01193	0.33	+0.2
1,303,724	-		PFR28_01193	0.33	+0.8
1,303,724	-		PFR28_01193	0.33	+1.0
1,303,724	-		PFR28_01193	0.33	-1.3
1,303,724	-		PFR28_01193	0.33	+0.1
1,303,724	-		PFR28_01193	0.33	-1.3
1,303,867	-		PFR28_01193	0.57	-0.4
1,303,867	-		PFR28_01193	0.57	-0.5
1,303,867	-		PFR28_01193	0.57	-1.0
1,303,913	+		PFR28_01193	0.65	+0.4
1,303,913	+		PFR28_01193	0.65	-0.9
1,303,913	+		PFR28_01193	0.65	-0.6
1,303,913	+		PFR28_01193	0.65	-0.2
1,303,913	+		PFR28_01193	0.65	+1.3
1,303,913	+		PFR28_01193	0.65	-1.3
1,303,913	+		PFR28_01193	0.65	-0.0
1,303,913	+		PFR28_01193	0.65	+0.7
1,303,913	+		PFR28_01193	0.65	-0.5
1,303,913	+		PFR28_01193	0.65	+1.0
1,303,913	+		PFR28_01193	0.65	-0.9
1,303,913	+		PFR28_01193	0.65	-2.5
1,303,913	+		PFR28_01193	0.65	-0.6
1,303,913	+		PFR28_01193	0.65	+0.4
1,303,913	+		PFR28_01193	0.65	-0.2
1,303,913	+		PFR28_01193	0.65	-1.8
1,303,913	+		PFR28_01193	0.65	-1.4
1,303,913	+		PFR28_01193	0.65	-0.1
1,303,914	-		PFR28_01193	0.65	-1.0
1,303,914	-		PFR28_01193	0.65	+0.1
1,303,914	-		PFR28_01193	0.65	+0.5
1,303,914	-		PFR28_01193	0.65	-0.6
1,303,914	-		PFR28_01193	0.65	+1.2
1,303,914	-		PFR28_01193	0.65	+0.6
1,303,914	-		PFR28_01193	0.65	+1.4
1,303,914	-		PFR28_01193	0.65	-0.6
1,303,914	-		PFR28_01193	0.65	-0.2
1,303,914	-		PFR28_01193	0.65	-0.8
1,303,914	-		PFR28_01193	0.65	-1.0
1,303,914	-		PFR28_01193	0.65	-0.1
1,303,914	-		PFR28_01193	0.65	-0.6
1,303,914	-		PFR28_01193	0.65	-0.3
1,303,914	-		PFR28_01193	0.65	-1.2
1,303,914	-		PFR28_01193	0.65	-1.2
1,303,952	+		PFR28_01193	0.71	+0.1
1,303,953	-		PFR28_01193	0.71	-0.6
1,303,953	-		PFR28_01193	0.71	+0.2
1,304,090	+				-0.6
1,304,090	+				-1.2
1,304,090	+				-1.8
1,304,090	+				+0.1
1,304,090	+				-0.3
1,304,090	+				+0.1
1,304,091	-				-0.5
1,304,091	-				+0.3
1,304,111	+				-0.1
1,304,111	+				-0.2
1,304,111	+				-0.6
1,304,112	-				+0.4
1,304,112	-				+0.1
1,304,233	+		PFR28_01194	0.64	-2.8
1,304,243	+		PFR28_01194	0.70	-0.1
1,304,243	+		PFR28_01194	0.70	-1.4
1,304,243	+		PFR28_01194	0.70	+0.7
1,304,260	+		PFR28_01194	0.80	-2.2
1,304,260	+		PFR28_01194	0.80	-0.9
1,304,285	+				-0.2
1,304,286	-				-3.4
1,304,328	+				+1.1
1,304,328	+				-0.4
1,304,329	-				+0.5
1,304,330	+				-0.2
1,304,330	+				-0.6
1,304,331	-				+0.8
1,304,331	-				+0.4
1,304,331	-				+0.5
1,304,491	+				-0.4
1,304,491	+				+0.7
1,304,491	+				-0.4
1,304,491	+				-0.6
1,304,491	+				-0.1
1,304,491	+				-0.5
1,304,492	-				-0.3
1,304,492	-				+0.1
1,304,587	+		PFR28_01195	0.12	-1.3
1,304,587	+		PFR28_01195	0.12	+0.3
1,304,587	+		PFR28_01195	0.12	+0.9
1,304,588	-		PFR28_01195	0.12	-0.8
1,304,588	-		PFR28_01195	0.12	-0.1
1,304,588	-		PFR28_01195	0.12	+0.0
1,304,588	-		PFR28_01195	0.12	+0.5
1,304,588	-		PFR28_01195	0.12	-0.5
1,304,588	-		PFR28_01195	0.12	+0.3
1,304,647	+		PFR28_01195	0.16	+0.2
1,304,659	+		PFR28_01195	0.17	+0.1
1,304,659	+		PFR28_01195	0.17	-1.4
1,304,660	-		PFR28_01195	0.18	+1.4
1,304,660	-		PFR28_01195	0.18	-0.3
1,304,660	-		PFR28_01195	0.18	+1.2
1,304,782	-		PFR28_01195	0.28	+0.3
1,304,800	+		PFR28_01195	0.29	-1.3
1,304,801	-		PFR28_01195	0.29	+2.1
1,304,801	-		PFR28_01195	0.29	+0.5
1,304,801	-		PFR28_01195	0.29	+0.4
1,304,863	+		PFR28_01195	0.34	-0.7
1,304,863	+		PFR28_01195	0.34	+0.1
1,304,863	+		PFR28_01195	0.34	+0.8
1,304,863	+		PFR28_01195	0.34	+1.5
1,304,863	+		PFR28_01195	0.34	-1.8
1,304,863	+		PFR28_01195	0.34	-1.0
1,304,864	-		PFR28_01195	0.34	+0.5
1,304,865	+		PFR28_01195	0.34	+0.2
1,304,865	+		PFR28_01195	0.34	+1.4
1,304,865	+		PFR28_01195	0.34	-1.4
1,304,866	-		PFR28_01195	0.34	+0.4
1,304,866	-		PFR28_01195	0.34	-0.9
1,304,866	-		PFR28_01195	0.34	-0.3
1,304,866	-		PFR28_01195	0.34	-1.1
1,304,866	-		PFR28_01195	0.34	+0.5
1,304,866	-		PFR28_01195	0.34	+0.6
1,304,866	-		PFR28_01195	0.34	-0.1
1,304,866	-		PFR28_01195	0.34	-0.2
1,305,096	+		PFR28_01195	0.53	+0.5