Strain Fitness in Serratia liquefaciens MT49 around IAI46_24510

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24505 and IAI46_24510 are separated by 25 nucleotidesIAI46_24510 and IAI46_24515 are separated by 29 nucleotides IAI46_24505: IAI46_24505 - argininosuccinate synthase, at 5,230,133 to 5,231,353 _24505 IAI46_24510: IAI46_24510 - acetylglutamate kinase, at 5,231,379 to 5,232,152 _24510 IAI46_24515: IAI46_24515 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,232,182 to 5,233,186 _24515 Position (kb) 5231 5232 5233Strain fitness (log2 ratio) -2 -1 0 1at 5230.401 kb on + strand, within IAI46_24505at 5230.401 kb on + strand, within IAI46_24505at 5230.401 kb on + strand, within IAI46_24505at 5230.402 kb on - strand, within IAI46_24505at 5230.402 kb on - strand, within IAI46_24505at 5230.406 kb on + strand, within IAI46_24505at 5230.406 kb on + strand, within IAI46_24505at 5230.406 kb on + strand, within IAI46_24505at 5230.406 kb on + strand, within IAI46_24505at 5230.407 kb on - strand, within IAI46_24505at 5230.407 kb on - strand, within IAI46_24505at 5230.410 kb on + strand, within IAI46_24505at 5230.411 kb on - strand, within IAI46_24505at 5230.411 kb on - strand, within IAI46_24505at 5230.411 kb on - strand, within IAI46_24505at 5230.564 kb on + strand, within IAI46_24505at 5230.623 kb on + strand, within IAI46_24505at 5230.623 kb on + strand, within IAI46_24505at 5230.655 kb on + strand, within IAI46_24505at 5230.742 kb on - strand, within IAI46_24505at 5230.789 kb on + strand, within IAI46_24505at 5230.789 kb on + strand, within IAI46_24505at 5230.789 kb on + strand, within IAI46_24505at 5230.789 kb on + strand, within IAI46_24505at 5230.789 kb on + strand, within IAI46_24505at 5230.789 kb on + strand, within IAI46_24505at 5230.789 kb on + strand, within IAI46_24505at 5230.790 kb on - strand, within IAI46_24505at 5230.790 kb on - strand, within IAI46_24505at 5230.790 kb on - strand, within IAI46_24505at 5230.790 kb on - strand, within IAI46_24505at 5230.790 kb on - strand, within IAI46_24505at 5230.790 kb on - strand, within IAI46_24505at 5230.816 kb on - strand, within IAI46_24505at 5230.864 kb on - strand, within IAI46_24505at 5230.942 kb on + strand, within IAI46_24505at 5230.942 kb on + strand, within IAI46_24505at 5230.945 kb on - strand, within IAI46_24505at 5230.945 kb on - strand, within IAI46_24505at 5230.945 kb on - strand, within IAI46_24505at 5230.945 kb on - strand, within IAI46_24505at 5231.079 kb on + strand, within IAI46_24505at 5231.079 kb on + strand, within IAI46_24505at 5231.091 kb on + strand, within IAI46_24505at 5231.092 kb on - strand, within IAI46_24505at 5231.124 kb on + strand, within IAI46_24505at 5231.124 kb on + strand, within IAI46_24505at 5231.124 kb on + strand, within IAI46_24505at 5231.125 kb on - strand, within IAI46_24505at 5231.125 kb on - strand, within IAI46_24505at 5231.230 kb on + strand, within IAI46_24505at 5231.230 kb on + strand, within IAI46_24505at 5231.265 kb on + strandat 5231.265 kb on + strandat 5231.299 kb on + strandat 5231.300 kb on - strandat 5231.316 kb on + strandat 5231.317 kb on - strandat 5231.369 kb on - strandat 5231.375 kb on - strandat 5231.380 kb on + strandat 5231.381 kb on - strandat 5231.456 kb on + strandat 5231.457 kb on - strand, within IAI46_24510at 5231.516 kb on + strand, within IAI46_24510at 5231.516 kb on + strand, within IAI46_24510at 5231.516 kb on + strand, within IAI46_24510at 5231.516 kb on + strand, within IAI46_24510at 5231.517 kb on - strand, within IAI46_24510at 5231.517 kb on - strand, within IAI46_24510at 5231.517 kb on - strand, within IAI46_24510at 5231.517 kb on - strand, within IAI46_24510at 5231.679 kb on + strand, within IAI46_24510at 5231.705 kb on + strand, within IAI46_24510at 5231.706 kb on - strand, within IAI46_24510at 5231.708 kb on + strand, within IAI46_24510at 5231.715 kb on - strand, within IAI46_24510at 5231.753 kb on + strand, within IAI46_24510at 5231.790 kb on + strand, within IAI46_24510at 5231.790 kb on + strand, within IAI46_24510at 5231.790 kb on + strand, within IAI46_24510at 5231.790 kb on + strand, within IAI46_24510at 5231.790 kb on + strand, within IAI46_24510at 5231.791 kb on - strand, within IAI46_24510at 5231.856 kb on + strand, within IAI46_24510at 5231.856 kb on + strand, within IAI46_24510at 5231.864 kb on + strand, within IAI46_24510at 5231.865 kb on - strand, within IAI46_24510at 5231.865 kb on - strand, within IAI46_24510at 5231.930 kb on + strand, within IAI46_24510at 5231.930 kb on + strand, within IAI46_24510at 5231.930 kb on + strand, within IAI46_24510at 5231.931 kb on - strand, within IAI46_24510at 5232.115 kb on - strandat 5232.115 kb on - strandat 5232.117 kb on + strandat 5232.118 kb on - strandat 5232.118 kb on - strandat 5232.118 kb on - strandat 5232.130 kb on - strandat 5232.137 kb on + strandat 5232.137 kb on + strandat 5232.142 kb on - strandat 5232.160 kb on + strandat 5232.160 kb on + strandat 5232.160 kb on + strandat 5232.161 kb on - strandat 5232.161 kb on - strandat 5232.161 kb on - strandat 5232.161 kb on - strandat 5232.161 kb on - strandat 5232.180 kb on + strandat 5232.183 kb on + strandat 5232.183 kb on + strandat 5232.183 kb on + strandat 5232.184 kb on - strandat 5232.184 kb on - strandat 5232.189 kb on - strandat 5232.397 kb on - strand, within IAI46_24515at 5232.503 kb on - strand, within IAI46_24515at 5232.522 kb on - strand, within IAI46_24515at 5232.522 kb on - strand, within IAI46_24515at 5232.789 kb on + strand, within IAI46_24515at 5232.789 kb on + strand, within IAI46_24515at 5232.790 kb on - strand, within IAI46_24515at 5232.791 kb on + strand, within IAI46_24515at 5232.791 kb on + strand, within IAI46_24515at 5232.792 kb on - strand, within IAI46_24515at 5232.792 kb on - strand, within IAI46_24515at 5232.792 kb on - strand, within IAI46_24515at 5232.835 kb on - strand, within IAI46_24515at 5232.837 kb on + strand, within IAI46_24515at 5232.837 kb on + strand, within IAI46_24515at 5232.838 kb on - strand, within IAI46_24515at 5232.838 kb on - strand, within IAI46_24515at 5232.838 kb on - strand, within IAI46_24515at 5233.031 kb on + strand, within IAI46_24515at 5233.124 kb on - strandat 5233.124 kb on - strandat 5233.128 kb on + strandat 5233.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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5,230,401 + IAI46_24505 0.22 -0.2
5,230,401 + IAI46_24505 0.22 -1.6
5,230,401 + IAI46_24505 0.22 -0.0
5,230,402 - IAI46_24505 0.22 -0.8
5,230,402 - IAI46_24505 0.22 -0.8
5,230,406 + IAI46_24505 0.22 -0.6
5,230,406 + IAI46_24505 0.22 -0.7
5,230,406 + IAI46_24505 0.22 +0.7
5,230,406 + IAI46_24505 0.22 -0.4
5,230,407 - IAI46_24505 0.22 -0.9
5,230,407 - IAI46_24505 0.22 -1.3
5,230,410 + IAI46_24505 0.23 -1.5
5,230,411 - IAI46_24505 0.23 -0.3
5,230,411 - IAI46_24505 0.23 -0.0
5,230,411 - IAI46_24505 0.23 -0.6
5,230,564 + IAI46_24505 0.35 -1.0
5,230,623 + IAI46_24505 0.40 +0.2
5,230,623 + IAI46_24505 0.40 -0.6
5,230,655 + IAI46_24505 0.43 -2.4
5,230,742 - IAI46_24505 0.50 -1.1
5,230,789 + IAI46_24505 0.54 -1.8
5,230,789 + IAI46_24505 0.54 -1.2
5,230,789 + IAI46_24505 0.54 +0.5
5,230,789 + IAI46_24505 0.54 -2.4
5,230,789 + IAI46_24505 0.54 -1.9
5,230,789 + IAI46_24505 0.54 -0.0
5,230,789 + IAI46_24505 0.54 -1.1
5,230,790 - IAI46_24505 0.54 -0.5
5,230,790 - IAI46_24505 0.54 -1.3
5,230,790 - IAI46_24505 0.54 -0.5
5,230,790 - IAI46_24505 0.54 -0.5
5,230,790 - IAI46_24505 0.54 +0.7
5,230,790 - IAI46_24505 0.54 -0.8
5,230,816 - IAI46_24505 0.56 -1.3
5,230,864 - IAI46_24505 0.60 -1.0
5,230,942 + IAI46_24505 0.66 +0.3
5,230,942 + IAI46_24505 0.66 -0.2
5,230,945 - IAI46_24505 0.67 -2.6
5,230,945 - IAI46_24505 0.67 -2.1
5,230,945 - IAI46_24505 0.67 -2.5
5,230,945 - IAI46_24505 0.67 -0.3
5,231,079 + IAI46_24505 0.77 -1.0
5,231,079 + IAI46_24505 0.77 -0.1
5,231,091 + IAI46_24505 0.78 -1.3
5,231,092 - IAI46_24505 0.79 -1.0
5,231,124 + IAI46_24505 0.81 -0.2
5,231,124 + IAI46_24505 0.81 +0.7
5,231,124 + IAI46_24505 0.81 -0.9
5,231,125 - IAI46_24505 0.81 +0.5
5,231,125 - IAI46_24505 0.81 +0.0
5,231,230 + IAI46_24505 0.90 -0.1
5,231,230 + IAI46_24505 0.90 -0.9
5,231,265 + -1.8
5,231,265 + +0.6
5,231,299 + +0.2
5,231,300 - -0.5
5,231,316 + -0.6
5,231,317 - -0.1
5,231,369 - +0.5
5,231,375 - +0.3
5,231,380 + +0.2
5,231,381 - +0.3
5,231,456 + -0.9
5,231,457 - IAI46_24510 0.10 -0.5
5,231,516 + IAI46_24510 0.18 +0.1
5,231,516 + IAI46_24510 0.18 -1.9
5,231,516 + IAI46_24510 0.18 +0.8
5,231,516 + IAI46_24510 0.18 -2.4
5,231,517 - IAI46_24510 0.18 +0.5
5,231,517 - IAI46_24510 0.18 -0.1
5,231,517 - IAI46_24510 0.18 -1.0
5,231,517 - IAI46_24510 0.18 -0.5
5,231,679 + IAI46_24510 0.39 +0.1
5,231,705 + IAI46_24510 0.42 -0.3
5,231,706 - IAI46_24510 0.42 +0.1
5,231,708 + IAI46_24510 0.43 -0.4
5,231,715 - IAI46_24510 0.43 -0.3
5,231,753 + IAI46_24510 0.48 -0.6
5,231,790 + IAI46_24510 0.53 -0.5
5,231,790 + IAI46_24510 0.53 +0.1
5,231,790 + IAI46_24510 0.53 -0.4
5,231,790 + IAI46_24510 0.53 -1.3
5,231,790 + IAI46_24510 0.53 -0.5
5,231,791 - IAI46_24510 0.53 -0.4
5,231,856 + IAI46_24510 0.62 -1.9
5,231,856 + IAI46_24510 0.62 -0.8
5,231,864 + IAI46_24510 0.63 -1.2
5,231,865 - IAI46_24510 0.63 -2.6
5,231,865 - IAI46_24510 0.63 -0.7
5,231,930 + IAI46_24510 0.71 -0.2
5,231,930 + IAI46_24510 0.71 -0.9
5,231,930 + IAI46_24510 0.71 -1.1
5,231,931 - IAI46_24510 0.71 -0.3
5,232,115 - -1.3
5,232,115 - +0.3
5,232,117 + -0.3
5,232,118 - -0.8
5,232,118 - +0.8
5,232,118 - -0.4
5,232,130 - -1.3
5,232,137 + -0.1
5,232,137 + -0.5
5,232,142 - +0.7
5,232,160 + +0.2
5,232,160 + -0.8
5,232,160 + -1.2
5,232,161 - -0.1
5,232,161 - -0.2
5,232,161 - -0.7
5,232,161 - +0.2
5,232,161 - -0.1
5,232,180 + +0.1
5,232,183 + -2.2
5,232,183 + -0.3
5,232,183 + -1.4
5,232,184 - -0.5
5,232,184 - -0.0
5,232,189 - +0.2
5,232,397 - IAI46_24515 0.21 -0.5
5,232,503 - IAI46_24515 0.32 +0.6
5,232,522 - IAI46_24515 0.34 -0.8
5,232,522 - IAI46_24515 0.34 -2.3
5,232,789 + IAI46_24515 0.60 +0.1
5,232,789 + IAI46_24515 0.60 -0.3
5,232,790 - IAI46_24515 0.60 -0.8
5,232,791 + IAI46_24515 0.61 +0.3
5,232,791 + IAI46_24515 0.61 +1.4
5,232,792 - IAI46_24515 0.61 -1.4
5,232,792 - IAI46_24515 0.61 -0.1
5,232,792 - IAI46_24515 0.61 -0.8
5,232,835 - IAI46_24515 0.65 -0.9
5,232,837 + IAI46_24515 0.65 -1.3
5,232,837 + IAI46_24515 0.65 -1.2
5,232,838 - IAI46_24515 0.65 -1.7
5,232,838 - IAI46_24515 0.65 -0.6
5,232,838 - IAI46_24515 0.65 +0.7
5,233,031 + IAI46_24515 0.84 -0.4
5,233,124 - +0.1
5,233,124 - -0.7
5,233,128 + -0.9
5,233,129 - -1.2

Or see this region's nucleotide sequence