Strain Fitness in Serratia liquefaciens MT49 around IAI46_24215

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24210 and IAI46_24215 are separated by 120 nucleotidesIAI46_24215 and IAI46_24220 are separated by 85 nucleotides IAI46_24210: IAI46_24210 - oligopeptidase A, at 5,161,070 to 5,163,112 _24210 IAI46_24215: IAI46_24215 - HIT family protein, at 5,163,233 to 5,163,694 _24215 IAI46_24220: IAI46_24220 - amidase, at 5,163,780 to 5,165,222 _24220 Position (kb) 5163 5164Strain fitness (log2 ratio) -1 0 1 2at 5162.281 kb on - strand, within IAI46_24210at 5162.457 kb on + strand, within IAI46_24210at 5162.457 kb on + strand, within IAI46_24210at 5162.458 kb on - strand, within IAI46_24210at 5162.616 kb on + strand, within IAI46_24210at 5162.616 kb on + strand, within IAI46_24210at 5162.617 kb on - strand, within IAI46_24210at 5162.784 kb on + strand, within IAI46_24210at 5162.784 kb on + strand, within IAI46_24210at 5162.784 kb on + strand, within IAI46_24210at 5162.785 kb on - strand, within IAI46_24210at 5162.785 kb on - strand, within IAI46_24210at 5162.794 kb on - strand, within IAI46_24210at 5162.794 kb on - strand, within IAI46_24210at 5162.794 kb on - strand, within IAI46_24210at 5162.794 kb on - strand, within IAI46_24210at 5162.795 kb on + strand, within IAI46_24210at 5162.796 kb on - strand, within IAI46_24210at 5162.962 kb on + strandat 5162.971 kb on + strandat 5163.003 kb on - strandat 5163.112 kb on + strandat 5163.112 kb on + strandat 5163.113 kb on - strandat 5163.169 kb on - strandat 5163.174 kb on + strandat 5163.174 kb on + strandat 5163.175 kb on - strandat 5163.175 kb on - strandat 5163.178 kb on + strandat 5163.178 kb on + strandat 5163.179 kb on - strandat 5163.179 kb on - strandat 5163.179 kb on - strandat 5163.179 kb on - strandat 5163.222 kb on + strandat 5163.222 kb on + strandat 5163.222 kb on + strandat 5163.222 kb on + strandat 5163.222 kb on + strandat 5163.222 kb on + strandat 5163.222 kb on + strandat 5163.223 kb on - strandat 5163.223 kb on - strandat 5163.223 kb on - strandat 5163.223 kb on - strandat 5163.226 kb on + strandat 5163.226 kb on + strandat 5163.226 kb on + strandat 5163.227 kb on - strandat 5163.234 kb on + strandat 5163.235 kb on - strandat 5163.235 kb on - strandat 5163.325 kb on - strand, within IAI46_24215at 5163.437 kb on + strand, within IAI46_24215at 5163.524 kb on + strand, within IAI46_24215at 5163.525 kb on - strand, within IAI46_24215at 5163.525 kb on - strand, within IAI46_24215at 5163.549 kb on + strand, within IAI46_24215at 5163.549 kb on + strand, within IAI46_24215at 5163.549 kb on + strand, within IAI46_24215at 5163.549 kb on + strand, within IAI46_24215at 5163.549 kb on + strand, within IAI46_24215at 5163.549 kb on + strand, within IAI46_24215at 5163.549 kb on + strand, within IAI46_24215at 5163.550 kb on - strand, within IAI46_24215at 5163.550 kb on - strand, within IAI46_24215at 5163.550 kb on - strand, within IAI46_24215at 5163.558 kb on + strand, within IAI46_24215at 5163.578 kb on + strand, within IAI46_24215at 5163.579 kb on - strand, within IAI46_24215at 5163.622 kb on + strand, within IAI46_24215at 5163.622 kb on + strand, within IAI46_24215at 5163.622 kb on + strand, within IAI46_24215at 5163.622 kb on + strand, within IAI46_24215at 5163.623 kb on - strand, within IAI46_24215at 5163.755 kb on + strandat 5163.756 kb on - strandat 5163.762 kb on + strandat 5163.763 kb on - strandat 5163.781 kb on + strandat 5163.781 kb on + strandat 5163.781 kb on + strandat 5163.782 kb on - strandat 5163.782 kb on - strandat 5163.918 kb on - strandat 5163.918 kb on - strandat 5163.918 kb on - strandat 5163.918 kb on - strandat 5163.971 kb on + strand, within IAI46_24220at 5164.003 kb on - strand, within IAI46_24220at 5164.031 kb on + strand, within IAI46_24220at 5164.051 kb on + strand, within IAI46_24220at 5164.051 kb on + strand, within IAI46_24220at 5164.051 kb on + strand, within IAI46_24220at 5164.105 kb on + strand, within IAI46_24220at 5164.105 kb on + strand, within IAI46_24220at 5164.170 kb on - strand, within IAI46_24220at 5164.317 kb on + strand, within IAI46_24220at 5164.317 kb on + strand, within IAI46_24220at 5164.318 kb on - strand, within IAI46_24220at 5164.466 kb on + strand, within IAI46_24220at 5164.528 kb on + strand, within IAI46_24220at 5164.529 kb on - strand, within IAI46_24220at 5164.531 kb on + strand, within IAI46_24220at 5164.532 kb on - strand, within IAI46_24220at 5164.557 kb on + strand, within IAI46_24220at 5164.557 kb on + strand, within IAI46_24220at 5164.557 kb on + strand, within IAI46_24220at 5164.557 kb on + strand, within IAI46_24220at 5164.557 kb on + strand, within IAI46_24220at 5164.558 kb on - strand, within IAI46_24220at 5164.558 kb on - strand, within IAI46_24220at 5164.656 kb on + strand, within IAI46_24220at 5164.677 kb on - strand, within IAI46_24220at 5164.677 kb on - strand, within IAI46_24220

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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5,162,281 - IAI46_24210 0.59 -0.4
5,162,457 + IAI46_24210 0.68 +0.6
5,162,457 + IAI46_24210 0.68 -0.0
5,162,458 - IAI46_24210 0.68 -0.4
5,162,616 + IAI46_24210 0.76 +1.9
5,162,616 + IAI46_24210 0.76 +1.2
5,162,617 - IAI46_24210 0.76 -0.0
5,162,784 + IAI46_24210 0.84 -0.8
5,162,784 + IAI46_24210 0.84 +0.1
5,162,784 + IAI46_24210 0.84 +0.0
5,162,785 - IAI46_24210 0.84 +0.8
5,162,785 - IAI46_24210 0.84 -0.3
5,162,794 - IAI46_24210 0.84 -0.2
5,162,794 - IAI46_24210 0.84 -0.1
5,162,794 - IAI46_24210 0.84 -0.3
5,162,794 - IAI46_24210 0.84 +0.5
5,162,795 + IAI46_24210 0.84 +0.3
5,162,796 - IAI46_24210 0.84 +0.4
5,162,962 + +1.2
5,162,971 + +0.4
5,163,003 - +0.6
5,163,112 + +0.7
5,163,112 + +0.0
5,163,113 - -0.8
5,163,169 - +1.0
5,163,174 + +0.1
5,163,174 + +0.3
5,163,175 - -0.0
5,163,175 - +0.1
5,163,178 + +0.3
5,163,178 + +0.4
5,163,179 - +0.6
5,163,179 - +0.8
5,163,179 - +0.4
5,163,179 - -0.7
5,163,222 + -1.1
5,163,222 + +0.3
5,163,222 + -0.2
5,163,222 + +0.7
5,163,222 + -1.4
5,163,222 + -0.1
5,163,222 + +0.4
5,163,223 - +1.4
5,163,223 - -0.3
5,163,223 - -0.2
5,163,223 - +0.6
5,163,226 + +0.6
5,163,226 + -0.6
5,163,226 + +0.2
5,163,227 - +0.1
5,163,234 + -0.4
5,163,235 - +0.4
5,163,235 - +0.5
5,163,325 - IAI46_24215 0.20 +0.0
5,163,437 + IAI46_24215 0.44 +0.6
5,163,524 + IAI46_24215 0.63 -1.1
5,163,525 - IAI46_24215 0.63 +1.2
5,163,525 - IAI46_24215 0.63 -0.2
5,163,549 + IAI46_24215 0.68 +0.6
5,163,549 + IAI46_24215 0.68 -0.5
5,163,549 + IAI46_24215 0.68 +0.4
5,163,549 + IAI46_24215 0.68 +0.4
5,163,549 + IAI46_24215 0.68 -0.6
5,163,549 + IAI46_24215 0.68 -0.5
5,163,549 + IAI46_24215 0.68 +0.5
5,163,550 - IAI46_24215 0.69 +0.3
5,163,550 - IAI46_24215 0.69 +0.1
5,163,550 - IAI46_24215 0.69 -0.4
5,163,558 + IAI46_24215 0.70 +0.4
5,163,578 + IAI46_24215 0.75 +0.2
5,163,579 - IAI46_24215 0.75 -0.0
5,163,622 + IAI46_24215 0.84 +0.6
5,163,622 + IAI46_24215 0.84 -0.4
5,163,622 + IAI46_24215 0.84 +1.1
5,163,622 + IAI46_24215 0.84 +0.7
5,163,623 - IAI46_24215 0.84 -0.1
5,163,755 + -0.3
5,163,756 - -0.1
5,163,762 + -0.4
5,163,763 - +0.3
5,163,781 + +0.6
5,163,781 + +0.3
5,163,781 + +0.3
5,163,782 - +0.4
5,163,782 - +0.0
5,163,918 - +0.6
5,163,918 - +0.2
5,163,918 - -0.4
5,163,918 - -0.5
5,163,971 + IAI46_24220 0.13 -0.5
5,164,003 - IAI46_24220 0.15 +1.0
5,164,031 + IAI46_24220 0.17 +0.1
5,164,051 + IAI46_24220 0.19 +1.0
5,164,051 + IAI46_24220 0.19 +0.4
5,164,051 + IAI46_24220 0.19 -0.0
5,164,105 + IAI46_24220 0.23 +0.0
5,164,105 + IAI46_24220 0.23 +0.1
5,164,170 - IAI46_24220 0.27 -0.3
5,164,317 + IAI46_24220 0.37 +0.6
5,164,317 + IAI46_24220 0.37 +0.4
5,164,318 - IAI46_24220 0.37 +0.5
5,164,466 + IAI46_24220 0.48 -0.7
5,164,528 + IAI46_24220 0.52 +0.2
5,164,529 - IAI46_24220 0.52 +0.8
5,164,531 + IAI46_24220 0.52 -0.4
5,164,532 - IAI46_24220 0.52 +0.1
5,164,557 + IAI46_24220 0.54 +0.2
5,164,557 + IAI46_24220 0.54 -0.4
5,164,557 + IAI46_24220 0.54 +0.1
5,164,557 + IAI46_24220 0.54 +0.4
5,164,557 + IAI46_24220 0.54 -0.2
5,164,558 - IAI46_24220 0.54 -0.2
5,164,558 - IAI46_24220 0.54 +1.5
5,164,656 + IAI46_24220 0.61 -1.4
5,164,677 - IAI46_24220 0.62 +1.4
5,164,677 - IAI46_24220 0.62 +0.0

Or see this region's nucleotide sequence