Strain Fitness in Serratia liquefaciens MT49 around IAI46_23160

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23155 and IAI46_23160 are separated by 364 nucleotidesIAI46_23160 and IAI46_23165 are separated by 235 nucleotidesIAI46_23165 and IAI46_23170 overlap by 4 nucleotides IAI46_23155: IAI46_23155 - methionine synthase, at 4,945,292 to 4,948,972 _23155 IAI46_23160: IAI46_23160 - glyoxylate bypass operon transcriptional repressor IclR, at 4,949,337 to 4,950,167 _23160 IAI46_23165: IAI46_23165 - gluconokinase, at 4,950,403 to 4,950,942 _23165 IAI46_23170: IAI46_23170 - gluconate transporter, at 4,950,939 to 4,952,276 _23170 Position (kb) 4949 4950 4951Strain fitness (log2 ratio) -1 0 1 2at 4948.485 kb on + strand, within IAI46_23155at 4948.516 kb on + strand, within IAI46_23155at 4948.549 kb on + strand, within IAI46_23155at 4948.590 kb on + strand, within IAI46_23155at 4948.591 kb on - strand, within IAI46_23155at 4948.659 kb on + strandat 4948.659 kb on + strandat 4948.659 kb on + strandat 4948.660 kb on - strandat 4948.663 kb on + strandat 4948.687 kb on + strandat 4948.687 kb on + strandat 4948.687 kb on + strandat 4948.688 kb on - strandat 4948.693 kb on - strandat 4948.693 kb on - strandat 4948.693 kb on - strandat 4948.885 kb on - strandat 4948.923 kb on - strandat 4948.923 kb on - strandat 4948.923 kb on - strandat 4948.959 kb on - strandat 4948.959 kb on - strandat 4948.986 kb on + strandat 4948.986 kb on + strandat 4948.987 kb on - strandat 4949.004 kb on + strandat 4949.004 kb on + strandat 4949.004 kb on + strandat 4949.004 kb on + strandat 4949.004 kb on + strandat 4949.004 kb on + strandat 4949.005 kb on - strandat 4949.005 kb on - strandat 4949.005 kb on - strandat 4949.005 kb on - strandat 4949.005 kb on - strandat 4949.006 kb on + strandat 4949.006 kb on + strandat 4949.006 kb on + strandat 4949.006 kb on + strandat 4949.017 kb on - strandat 4949.017 kb on - strandat 4949.020 kb on + strandat 4949.037 kb on + strandat 4949.037 kb on + strandat 4949.037 kb on + strandat 4949.038 kb on - strandat 4949.038 kb on - strandat 4949.059 kb on + strandat 4949.110 kb on + strandat 4949.114 kb on + strandat 4949.114 kb on + strandat 4949.115 kb on - strandat 4949.115 kb on - strandat 4949.115 kb on - strandat 4949.115 kb on - strandat 4949.115 kb on - strandat 4949.119 kb on + strandat 4949.119 kb on + strandat 4949.119 kb on + strandat 4949.120 kb on - strandat 4949.120 kb on - strandat 4949.188 kb on + strandat 4949.189 kb on - strandat 4949.416 kb on + strandat 4949.417 kb on - strandat 4949.451 kb on + strand, within IAI46_23160at 4949.514 kb on - strand, within IAI46_23160at 4949.514 kb on - strand, within IAI46_23160at 4949.514 kb on - strand, within IAI46_23160at 4949.514 kb on - strand, within IAI46_23160at 4949.594 kb on + strand, within IAI46_23160at 4949.594 kb on + strand, within IAI46_23160at 4949.595 kb on - strand, within IAI46_23160at 4949.596 kb on + strand, within IAI46_23160at 4949.596 kb on + strand, within IAI46_23160at 4949.643 kb on - strand, within IAI46_23160at 4949.748 kb on - strand, within IAI46_23160at 4949.748 kb on - strand, within IAI46_23160at 4949.748 kb on - strand, within IAI46_23160at 4949.882 kb on + strand, within IAI46_23160at 4949.901 kb on + strand, within IAI46_23160at 4949.902 kb on - strand, within IAI46_23160at 4949.912 kb on + strand, within IAI46_23160at 4949.913 kb on - strand, within IAI46_23160at 4950.150 kb on + strandat 4950.165 kb on + strandat 4950.219 kb on - strandat 4950.219 kb on - strandat 4950.232 kb on + strandat 4950.233 kb on - strandat 4950.236 kb on + strandat 4950.236 kb on + strandat 4950.236 kb on + strandat 4950.237 kb on - strandat 4950.317 kb on - strandat 4950.366 kb on + strandat 4950.397 kb on + strandat 4950.398 kb on - strandat 4950.411 kb on + strandat 4950.412 kb on - strandat 4950.412 kb on - strandat 4950.423 kb on + strandat 4950.424 kb on - strandat 4950.427 kb on + strandat 4950.435 kb on + strandat 4950.538 kb on - strand, within IAI46_23165at 4950.636 kb on + strand, within IAI46_23165at 4950.636 kb on + strand, within IAI46_23165at 4950.636 kb on + strand, within IAI46_23165at 4950.636 kb on + strand, within IAI46_23165at 4950.637 kb on - strand, within IAI46_23165at 4950.637 kb on - strand, within IAI46_23165at 4950.637 kb on - strand, within IAI46_23165at 4950.849 kb on + strand, within IAI46_23165at 4950.849 kb on + strand, within IAI46_23165at 4950.849 kb on + strand, within IAI46_23165at 4950.849 kb on + strand, within IAI46_23165at 4950.850 kb on - strand, within IAI46_23165at 4950.857 kb on + strand, within IAI46_23165at 4950.857 kb on + strand, within IAI46_23165at 4950.857 kb on + strand, within IAI46_23165at 4950.857 kb on + strand, within IAI46_23165at 4950.857 kb on + strand, within IAI46_23165at 4950.858 kb on - strand, within IAI46_23165at 4950.858 kb on - strand, within IAI46_23165at 4950.858 kb on - strand, within IAI46_23165at 4950.861 kb on + strand, within IAI46_23165at 4950.861 kb on + strand, within IAI46_23165at 4950.906 kb on + strandat 4950.906 kb on + strandat 4950.906 kb on + strandat 4950.907 kb on - strandat 4950.944 kb on + strandat 4950.945 kb on - strandat 4950.945 kb on - strandat 4950.949 kb on + strandat 4950.949 kb on + strandat 4950.950 kb on - strandat 4950.950 kb on - strandat 4950.982 kb on + strandat 4950.982 kb on + strandat 4950.982 kb on + strandat 4950.982 kb on + strandat 4950.982 kb on + strandat 4950.982 kb on + strandat 4950.982 kb on + strandat 4950.983 kb on - strandat 4950.983 kb on - strandat 4950.983 kb on - strandat 4950.983 kb on - strandat 4950.986 kb on - strandat 4950.991 kb on + strandat 4950.992 kb on - strandat 4951.047 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,948,485 + IAI46_23155 0.87 +0.7
4,948,516 + IAI46_23155 0.88 +0.1
4,948,549 + IAI46_23155 0.88 +0.8
4,948,590 + IAI46_23155 0.90 -0.6
4,948,591 - IAI46_23155 0.90 +0.7
4,948,659 + -0.1
4,948,659 + +0.1
4,948,659 + -0.7
4,948,660 - +1.2
4,948,663 + -0.0
4,948,687 + +0.5
4,948,687 + +0.5
4,948,687 + +0.2
4,948,688 - +0.7
4,948,693 - +2.6
4,948,693 - +1.2
4,948,693 - +0.9
4,948,885 - +0.3
4,948,923 - -0.5
4,948,923 - -0.4
4,948,923 - +0.4
4,948,959 - +0.2
4,948,959 - +0.2
4,948,986 + -0.7
4,948,986 + +0.0
4,948,987 - +1.0
4,949,004 + -0.0
4,949,004 + +1.0
4,949,004 + -0.2
4,949,004 + -0.0
4,949,004 + +0.2
4,949,004 + +0.3
4,949,005 - -0.5
4,949,005 - +0.1
4,949,005 - -0.1
4,949,005 - -0.2
4,949,005 - +0.3
4,949,006 + -0.0
4,949,006 + +0.6
4,949,006 + -0.2
4,949,006 + +0.2
4,949,017 - +0.5
4,949,017 - +0.3
4,949,020 + +0.2
4,949,037 + +0.4
4,949,037 + -0.4
4,949,037 + +0.5
4,949,038 - +0.8
4,949,038 - -0.6
4,949,059 + -0.2
4,949,110 + -0.3
4,949,114 + -0.5
4,949,114 + +1.5
4,949,115 - +0.1
4,949,115 - +0.1
4,949,115 - +0.4
4,949,115 - +0.1
4,949,115 - +0.9
4,949,119 + -1.1
4,949,119 + +0.1
4,949,119 + +0.0
4,949,120 - -0.5
4,949,120 - -0.5
4,949,188 + +0.4
4,949,189 - +0.9
4,949,416 + +0.9
4,949,417 - -0.2
4,949,451 + IAI46_23160 0.14 -0.2
4,949,514 - IAI46_23160 0.21 +0.5
4,949,514 - IAI46_23160 0.21 +0.9
4,949,514 - IAI46_23160 0.21 +0.3
4,949,514 - IAI46_23160 0.21 -0.4
4,949,594 + IAI46_23160 0.31 -0.0
4,949,594 + IAI46_23160 0.31 +0.2
4,949,595 - IAI46_23160 0.31 -0.3
4,949,596 + IAI46_23160 0.31 +0.1
4,949,596 + IAI46_23160 0.31 +0.4
4,949,643 - IAI46_23160 0.37 +0.8
4,949,748 - IAI46_23160 0.49 +1.2
4,949,748 - IAI46_23160 0.49 +0.0
4,949,748 - IAI46_23160 0.49 +0.1
4,949,882 + IAI46_23160 0.66 +0.3
4,949,901 + IAI46_23160 0.68 +0.1
4,949,902 - IAI46_23160 0.68 +0.7
4,949,912 + IAI46_23160 0.69 +0.4
4,949,913 - IAI46_23160 0.69 +1.2
4,950,150 + +0.2
4,950,165 + +0.9
4,950,219 - +1.4
4,950,219 - +0.1
4,950,232 + -1.6
4,950,233 - +0.3
4,950,236 + -0.6
4,950,236 + +0.6
4,950,236 + +0.3
4,950,237 - +1.2
4,950,317 - +0.5
4,950,366 + +0.1
4,950,397 + +0.0
4,950,398 - +0.2
4,950,411 + +0.1
4,950,412 - -0.3
4,950,412 - -1.7
4,950,423 + -0.4
4,950,424 - +0.1
4,950,427 + -1.1
4,950,435 + -0.3
4,950,538 - IAI46_23165 0.25 -0.2
4,950,636 + IAI46_23165 0.43 -0.1
4,950,636 + IAI46_23165 0.43 -0.1
4,950,636 + IAI46_23165 0.43 +0.8
4,950,636 + IAI46_23165 0.43 +0.2
4,950,637 - IAI46_23165 0.43 -0.6
4,950,637 - IAI46_23165 0.43 +0.1
4,950,637 - IAI46_23165 0.43 -0.2
4,950,849 + IAI46_23165 0.83 +0.2
4,950,849 + IAI46_23165 0.83 -0.4
4,950,849 + IAI46_23165 0.83 +0.8
4,950,849 + IAI46_23165 0.83 +0.0
4,950,850 - IAI46_23165 0.83 -0.1
4,950,857 + IAI46_23165 0.84 +0.5
4,950,857 + IAI46_23165 0.84 +0.1
4,950,857 + IAI46_23165 0.84 +0.0
4,950,857 + IAI46_23165 0.84 -0.7
4,950,857 + IAI46_23165 0.84 +0.5
4,950,858 - IAI46_23165 0.84 +0.4
4,950,858 - IAI46_23165 0.84 -0.1
4,950,858 - IAI46_23165 0.84 +0.9
4,950,861 + IAI46_23165 0.85 +0.4
4,950,861 + IAI46_23165 0.85 -0.2
4,950,906 + -0.3
4,950,906 + -0.0
4,950,906 + +0.2
4,950,907 - +0.3
4,950,944 + +0.4
4,950,945 - +2.4
4,950,945 - +0.4
4,950,949 + -0.8
4,950,949 + +0.4
4,950,950 - +0.5
4,950,950 - +0.9
4,950,982 + -1.5
4,950,982 + +0.3
4,950,982 + -0.5
4,950,982 + +1.2
4,950,982 + +0.0
4,950,982 + +0.1
4,950,982 + -0.1
4,950,983 - +0.4
4,950,983 - +0.7
4,950,983 - +0.4
4,950,983 - -0.4
4,950,986 - -0.1
4,950,991 + +1.0
4,950,992 - +0.0
4,951,047 - -0.0

Or see this region's nucleotide sequence