Strain Fitness in Serratia liquefaciens MT49 around IAI46_22820

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22815 and IAI46_22820 are separated by 33 nucleotidesIAI46_22820 and IAI46_22825 overlap by 8 nucleotidesIAI46_22825 and IAI46_22830 are separated by 138 nucleotides IAI46_22815: IAI46_22815 - amino acid adenylation domain-containing protein, at 4,859,453 to 4,863,397 _22815 IAI46_22820: IAI46_22820 - LrgB family protein, at 4,863,431 to 4,864,120 _22820 IAI46_22825: IAI46_22825 - CidA/LrgA family protein, at 4,864,113 to 4,864,535 _22825 IAI46_22830: IAI46_22830 - LysR family transcriptional regulator, at 4,864,674 to 4,865,576 _22830 Position (kb) 4863 4864 4865Strain fitness (log2 ratio) -2 -1 0 1at 4862.529 kb on + strand, within IAI46_22815at 4862.614 kb on + strand, within IAI46_22815at 4862.714 kb on - strand, within IAI46_22815at 4862.750 kb on - strand, within IAI46_22815at 4862.753 kb on + strand, within IAI46_22815at 4862.753 kb on + strand, within IAI46_22815at 4862.753 kb on + strand, within IAI46_22815at 4862.754 kb on - strand, within IAI46_22815at 4862.810 kb on + strand, within IAI46_22815at 4862.810 kb on + strand, within IAI46_22815at 4862.810 kb on + strand, within IAI46_22815at 4862.811 kb on - strand, within IAI46_22815at 4862.811 kb on - strand, within IAI46_22815at 4862.811 kb on - strand, within IAI46_22815at 4862.822 kb on - strand, within IAI46_22815at 4862.861 kb on + strand, within IAI46_22815at 4862.861 kb on + strand, within IAI46_22815at 4862.861 kb on + strand, within IAI46_22815at 4862.861 kb on + strand, within IAI46_22815at 4862.861 kb on + strand, within IAI46_22815at 4862.861 kb on + strand, within IAI46_22815at 4862.862 kb on - strand, within IAI46_22815at 4862.862 kb on - strand, within IAI46_22815at 4862.862 kb on - strand, within IAI46_22815at 4862.862 kb on - strand, within IAI46_22815at 4862.862 kb on - strand, within IAI46_22815at 4862.862 kb on - strand, within IAI46_22815at 4862.864 kb on + strand, within IAI46_22815at 4862.864 kb on + strand, within IAI46_22815at 4863.001 kb on + strand, within IAI46_22815at 4863.123 kb on + strandat 4863.123 kb on + strandat 4863.123 kb on + strandat 4863.124 kb on - strandat 4863.208 kb on + strandat 4863.268 kb on + strandat 4863.268 kb on + strandat 4863.268 kb on + strandat 4863.269 kb on - strandat 4863.288 kb on + strandat 4863.289 kb on - strandat 4863.304 kb on + strandat 4863.304 kb on + strandat 4863.304 kb on + strandat 4863.317 kb on - strandat 4863.362 kb on - strandat 4863.451 kb on + strandat 4863.869 kb on - strand, within IAI46_22820at 4863.920 kb on + strand, within IAI46_22820at 4863.921 kb on - strand, within IAI46_22820at 4863.921 kb on - strand, within IAI46_22820at 4863.927 kb on - strand, within IAI46_22820at 4863.927 kb on - strand, within IAI46_22820at 4863.927 kb on - strand, within IAI46_22820at 4863.927 kb on - strand, within IAI46_22820at 4863.951 kb on + strand, within IAI46_22820at 4863.952 kb on - strand, within IAI46_22820at 4863.952 kb on - strand, within IAI46_22820at 4863.952 kb on - strand, within IAI46_22820at 4863.967 kb on + strand, within IAI46_22820at 4863.967 kb on + strand, within IAI46_22820at 4863.967 kb on + strand, within IAI46_22820at 4863.967 kb on + strand, within IAI46_22820at 4863.968 kb on - strand, within IAI46_22820at 4864.033 kb on + strand, within IAI46_22820at 4864.033 kb on + strand, within IAI46_22820at 4864.034 kb on - strand, within IAI46_22820at 4864.034 kb on - strand, within IAI46_22820at 4864.068 kb on + strandat 4864.068 kb on + strandat 4864.068 kb on + strandat 4864.109 kb on - strandat 4864.157 kb on + strand, within IAI46_22825at 4864.158 kb on - strand, within IAI46_22825at 4864.198 kb on - strand, within IAI46_22825at 4864.249 kb on - strand, within IAI46_22825at 4864.261 kb on + strand, within IAI46_22825at 4864.261 kb on + strand, within IAI46_22825at 4864.261 kb on + strand, within IAI46_22825at 4864.261 kb on + strand, within IAI46_22825at 4864.262 kb on - strand, within IAI46_22825at 4864.262 kb on - strand, within IAI46_22825at 4864.262 kb on - strand, within IAI46_22825at 4864.453 kb on - strand, within IAI46_22825at 4864.453 kb on - strand, within IAI46_22825at 4864.462 kb on + strand, within IAI46_22825at 4864.462 kb on + strand, within IAI46_22825at 4864.462 kb on + strand, within IAI46_22825at 4864.463 kb on - strand, within IAI46_22825at 4864.463 kb on - strand, within IAI46_22825at 4864.463 kb on - strand, within IAI46_22825at 4864.464 kb on + strand, within IAI46_22825at 4864.464 kb on + strand, within IAI46_22825at 4864.465 kb on - strand, within IAI46_22825at 4864.530 kb on + strandat 4864.530 kb on + strandat 4864.530 kb on + strandat 4864.548 kb on + strandat 4864.573 kb on + strandat 4864.574 kb on - strandat 4864.574 kb on - strandat 4864.575 kb on + strandat 4864.575 kb on + strandat 4864.575 kb on + strandat 4864.575 kb on + strandat 4864.576 kb on - strandat 4864.576 kb on - strandat 4864.695 kb on + strandat 4864.696 kb on - strandat 4864.696 kb on - strandat 4864.727 kb on + strandat 4864.864 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.866 kb on + strand, within IAI46_22830at 4864.867 kb on - strand, within IAI46_22830at 4865.019 kb on + strand, within IAI46_22830at 4865.020 kb on - strand, within IAI46_22830at 4865.110 kb on + strand, within IAI46_22830at 4865.110 kb on + strand, within IAI46_22830at 4865.110 kb on + strand, within IAI46_22830at 4865.111 kb on - strand, within IAI46_22830at 4865.111 kb on - strand, within IAI46_22830at 4865.111 kb on - strand, within IAI46_22830at 4865.111 kb on - strand, within IAI46_22830

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,862,529 + IAI46_22815 0.78 -0.3
4,862,614 + IAI46_22815 0.80 +0.1
4,862,714 - IAI46_22815 0.83 +0.2
4,862,750 - IAI46_22815 0.84 +0.4
4,862,753 + IAI46_22815 0.84 +0.4
4,862,753 + IAI46_22815 0.84 +0.1
4,862,753 + IAI46_22815 0.84 +0.7
4,862,754 - IAI46_22815 0.84 +0.7
4,862,810 + IAI46_22815 0.85 +0.1
4,862,810 + IAI46_22815 0.85 -0.3
4,862,810 + IAI46_22815 0.85 -0.1
4,862,811 - IAI46_22815 0.85 +0.6
4,862,811 - IAI46_22815 0.85 +0.8
4,862,811 - IAI46_22815 0.85 -0.4
4,862,822 - IAI46_22815 0.85 +0.7
4,862,861 + IAI46_22815 0.86 +0.9
4,862,861 + IAI46_22815 0.86 -0.6
4,862,861 + IAI46_22815 0.86 +0.1
4,862,861 + IAI46_22815 0.86 +0.1
4,862,861 + IAI46_22815 0.86 +0.1
4,862,861 + IAI46_22815 0.86 -0.0
4,862,862 - IAI46_22815 0.86 -0.2
4,862,862 - IAI46_22815 0.86 +0.1
4,862,862 - IAI46_22815 0.86 -0.4
4,862,862 - IAI46_22815 0.86 +1.0
4,862,862 - IAI46_22815 0.86 -0.7
4,862,862 - IAI46_22815 0.86 +0.4
4,862,864 + IAI46_22815 0.86 +0.4
4,862,864 + IAI46_22815 0.86 +0.1
4,863,001 + IAI46_22815 0.90 +1.1
4,863,123 + -0.1
4,863,123 + -0.1
4,863,123 + -0.7
4,863,124 - +1.0
4,863,208 + -0.5
4,863,268 + +0.2
4,863,268 + +0.3
4,863,268 + +1.2
4,863,269 - -1.2
4,863,288 + -0.9
4,863,289 - -0.5
4,863,304 + -0.6
4,863,304 + +0.5
4,863,304 + +0.0
4,863,317 - +0.3
4,863,362 - +0.4
4,863,451 + +0.2
4,863,869 - IAI46_22820 0.63 +0.5
4,863,920 + IAI46_22820 0.71 +0.9
4,863,921 - IAI46_22820 0.71 +0.3
4,863,921 - IAI46_22820 0.71 +0.9
4,863,927 - IAI46_22820 0.72 +0.8
4,863,927 - IAI46_22820 0.72 +1.2
4,863,927 - IAI46_22820 0.72 -0.4
4,863,927 - IAI46_22820 0.72 +0.8
4,863,951 + IAI46_22820 0.75 +0.3
4,863,952 - IAI46_22820 0.76 +1.6
4,863,952 - IAI46_22820 0.76 +0.4
4,863,952 - IAI46_22820 0.76 +1.0
4,863,967 + IAI46_22820 0.78 -0.2
4,863,967 + IAI46_22820 0.78 -0.1
4,863,967 + IAI46_22820 0.78 +0.3
4,863,967 + IAI46_22820 0.78 -0.1
4,863,968 - IAI46_22820 0.78 +1.4
4,864,033 + IAI46_22820 0.87 +0.3
4,864,033 + IAI46_22820 0.87 -1.6
4,864,034 - IAI46_22820 0.87 +1.5
4,864,034 - IAI46_22820 0.87 +0.5
4,864,068 + +0.6
4,864,068 + +1.6
4,864,068 + -0.2
4,864,109 - +0.5
4,864,157 + IAI46_22825 0.10 +0.5
4,864,158 - IAI46_22825 0.11 +0.5
4,864,198 - IAI46_22825 0.20 -0.1
4,864,249 - IAI46_22825 0.32 +0.4
4,864,261 + IAI46_22825 0.35 +0.2
4,864,261 + IAI46_22825 0.35 -0.9
4,864,261 + IAI46_22825 0.35 +0.3
4,864,261 + IAI46_22825 0.35 +0.4
4,864,262 - IAI46_22825 0.35 +0.5
4,864,262 - IAI46_22825 0.35 +0.1
4,864,262 - IAI46_22825 0.35 -2.0
4,864,453 - IAI46_22825 0.80 +0.3
4,864,453 - IAI46_22825 0.80 +0.0
4,864,462 + IAI46_22825 0.83 +0.4
4,864,462 + IAI46_22825 0.83 +0.0
4,864,462 + IAI46_22825 0.83 +0.6
4,864,463 - IAI46_22825 0.83 -0.6
4,864,463 - IAI46_22825 0.83 +1.1
4,864,463 - IAI46_22825 0.83 -0.2
4,864,464 + IAI46_22825 0.83 +0.2
4,864,464 + IAI46_22825 0.83 -0.9
4,864,465 - IAI46_22825 0.83 -0.2
4,864,530 + +0.3
4,864,530 + +0.2
4,864,530 + +0.2
4,864,548 + +1.2
4,864,573 + -0.3
4,864,574 - +0.7
4,864,574 - +0.2
4,864,575 + +0.3
4,864,575 + +0.5
4,864,575 + +0.2
4,864,575 + -0.7
4,864,576 - +0.7
4,864,576 - +0.4
4,864,695 + -0.4
4,864,696 - +0.9
4,864,696 - +0.2
4,864,727 + +1.0
4,864,864 + IAI46_22830 0.21 +0.0
4,864,866 + IAI46_22830 0.21 +0.7
4,864,866 + IAI46_22830 0.21 +0.2
4,864,866 + IAI46_22830 0.21 -0.1
4,864,866 + IAI46_22830 0.21 -0.2
4,864,866 + IAI46_22830 0.21 -0.2
4,864,867 - IAI46_22830 0.21 -0.3
4,865,019 + IAI46_22830 0.38 -0.4
4,865,020 - IAI46_22830 0.38 +0.1
4,865,110 + IAI46_22830 0.48 +0.4
4,865,110 + IAI46_22830 0.48 +0.6
4,865,110 + IAI46_22830 0.48 +0.4
4,865,111 - IAI46_22830 0.48 -0.2
4,865,111 - IAI46_22830 0.48 -0.6
4,865,111 - IAI46_22830 0.48 +0.1
4,865,111 - IAI46_22830 0.48 -0.9

Or see this region's nucleotide sequence