Strain Fitness in Serratia liquefaciens MT49 around IAI46_22765

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22755 and IAI46_22760 are separated by 390 nucleotidesIAI46_22760 and IAI46_22765 overlap by 11 nucleotidesIAI46_22765 and IAI46_22770 are separated by 11 nucleotides IAI46_22755: IAI46_22755 - acetyl-CoA carboxylase biotin carboxylase subunit, at 4,844,538 to 4,845,887 _22755 IAI46_22760: IAI46_22760 - YhdT family protein, at 4,846,278 to 4,846,520 _22760 IAI46_22765: IAI46_22765 - sodium/pantothenate symporter, at 4,846,510 to 4,847,955 _22765 IAI46_22770: IAI46_22770 - 50S ribosomal protein L11 methyltransferase, at 4,847,967 to 4,848,848 _22770 Position (kb) 4846 4847 4848Strain fitness (log2 ratio) -2 -1 0 1 2at 4845.885 kb on + strandat 4845.895 kb on + strandat 4845.895 kb on + strandat 4845.937 kb on - strandat 4845.998 kb on + strandat 4846.130 kb on - strandat 4846.132 kb on + strandat 4846.132 kb on + strandat 4846.132 kb on + strandat 4846.132 kb on + strandat 4846.132 kb on + strandat 4846.133 kb on - strandat 4846.139 kb on - strandat 4846.139 kb on - strandat 4846.139 kb on - strandat 4846.139 kb on - strandat 4846.139 kb on - strandat 4846.139 kb on - strandat 4846.139 kb on - strandat 4846.145 kb on + strandat 4846.145 kb on + strandat 4846.149 kb on + strandat 4846.150 kb on - strandat 4846.198 kb on - strandat 4846.198 kb on - strandat 4846.198 kb on - strandat 4846.198 kb on - strandat 4846.203 kb on - strandat 4846.203 kb on - strandat 4846.203 kb on - strandat 4846.203 kb on - strandat 4846.203 kb on - strandat 4846.206 kb on - strandat 4846.262 kb on + strandat 4846.262 kb on + strandat 4846.264 kb on + strandat 4846.264 kb on + strandat 4846.292 kb on + strandat 4846.293 kb on - strandat 4846.368 kb on + strand, within IAI46_22760at 4846.368 kb on + strand, within IAI46_22760at 4846.394 kb on + strand, within IAI46_22760at 4846.480 kb on + strand, within IAI46_22760at 4846.480 kb on + strand, within IAI46_22760at 4846.480 kb on + strand, within IAI46_22760at 4846.480 kb on + strand, within IAI46_22760at 4846.481 kb on - strand, within IAI46_22760at 4846.490 kb on + strand, within IAI46_22760at 4846.491 kb on - strand, within IAI46_22760at 4846.543 kb on + strandat 4846.573 kb on + strandat 4846.574 kb on - strandat 4846.579 kb on + strandat 4846.579 kb on + strandat 4846.580 kb on - strandat 4846.615 kb on + strandat 4846.675 kb on + strand, within IAI46_22765at 4846.675 kb on + strand, within IAI46_22765at 4846.675 kb on + strand, within IAI46_22765at 4846.675 kb on + strand, within IAI46_22765at 4846.675 kb on + strand, within IAI46_22765at 4846.675 kb on + strand, within IAI46_22765at 4846.675 kb on + strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.676 kb on - strand, within IAI46_22765at 4846.677 kb on + strand, within IAI46_22765at 4846.677 kb on + strand, within IAI46_22765at 4846.677 kb on + strand, within IAI46_22765at 4846.677 kb on + strand, within IAI46_22765at 4846.677 kb on + strand, within IAI46_22765at 4846.678 kb on - strand, within IAI46_22765at 4846.678 kb on - strand, within IAI46_22765at 4846.678 kb on - strand, within IAI46_22765at 4846.719 kb on + strand, within IAI46_22765at 4846.719 kb on + strand, within IAI46_22765at 4846.720 kb on - strand, within IAI46_22765at 4846.720 kb on - strand, within IAI46_22765at 4846.720 kb on - strand, within IAI46_22765at 4846.723 kb on + strand, within IAI46_22765at 4846.724 kb on - strand, within IAI46_22765at 4846.845 kb on + strand, within IAI46_22765at 4846.845 kb on + strand, within IAI46_22765at 4846.846 kb on - strand, within IAI46_22765at 4846.846 kb on - strand, within IAI46_22765at 4846.853 kb on - strand, within IAI46_22765at 4846.938 kb on + strand, within IAI46_22765at 4846.982 kb on - strand, within IAI46_22765at 4847.023 kb on + strand, within IAI46_22765at 4847.024 kb on - strand, within IAI46_22765at 4847.024 kb on - strand, within IAI46_22765at 4847.154 kb on + strand, within IAI46_22765at 4847.184 kb on - strand, within IAI46_22765at 4847.296 kb on + strand, within IAI46_22765at 4847.464 kb on + strand, within IAI46_22765at 4847.564 kb on - strand, within IAI46_22765at 4847.574 kb on - strand, within IAI46_22765at 4847.726 kb on + strand, within IAI46_22765at 4847.727 kb on - strand, within IAI46_22765at 4847.787 kb on + strand, within IAI46_22765at 4847.787 kb on + strand, within IAI46_22765at 4847.788 kb on - strand, within IAI46_22765at 4847.788 kb on - strand, within IAI46_22765at 4847.788 kb on - strand, within IAI46_22765at 4847.810 kb on + strand, within IAI46_22765at 4847.811 kb on - strandat 4847.815 kb on + strandat 4847.815 kb on + strandat 4847.815 kb on + strandat 4847.815 kb on + strandat 4847.815 kb on + strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.816 kb on - strandat 4847.817 kb on + strandat 4847.817 kb on + strandat 4847.817 kb on + strandat 4847.817 kb on + strandat 4847.818 kb on - strandat 4847.818 kb on - strandat 4847.818 kb on - strandat 4847.846 kb on + strandat 4847.862 kb on + strandat 4847.863 kb on - strandat 4847.883 kb on + strandat 4847.884 kb on - strandat 4847.899 kb on + strandat 4847.899 kb on + strandat 4847.899 kb on + strandat 4847.900 kb on - strandat 4847.902 kb on - strandat 4847.953 kb on + strandat 4847.953 kb on + strandat 4847.966 kb on + strandat 4847.966 kb on + strandat 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.144 kb on + strand, within IAI46_22770at 4848.145 kb on - strand, within IAI46_22770at 4848.145 kb on - strand, within IAI46_22770at 4848.145 kb on - strand, within IAI46_22770at 4848.452 kb on + strand, within IAI46_22770at 4848.720 kb on + strand, within IAI46_22770at 4848.774 kb on + strandat 4848.775 kb on - strandat 4848.775 kb on - strandat 4848.846 kb on + strandat 4848.847 kb on - strandat 4848.847 kb on - strandat 4848.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,845,885 + -0.3
4,845,895 + +0.4
4,845,895 + +0.7
4,845,937 - -0.6
4,845,998 + -0.2
4,846,130 - +0.1
4,846,132 + -0.1
4,846,132 + -0.0
4,846,132 + -0.2
4,846,132 + +1.0
4,846,132 + +0.2
4,846,133 - +0.6
4,846,139 - +0.7
4,846,139 - +0.9
4,846,139 - +0.4
4,846,139 - -0.8
4,846,139 - -2.1
4,846,139 - +0.1
4,846,139 - -1.4
4,846,145 + +0.5
4,846,145 + -0.4
4,846,149 + -1.3
4,846,150 - +1.2
4,846,198 - -0.7
4,846,198 - -0.5
4,846,198 - +0.9
4,846,198 - +0.8
4,846,203 - +0.1
4,846,203 - -0.5
4,846,203 - +0.2
4,846,203 - -0.3
4,846,203 - +0.1
4,846,206 - -0.1
4,846,262 + -0.4
4,846,262 + +0.4
4,846,264 + -0.1
4,846,264 + +0.3
4,846,292 + -0.9
4,846,293 - +0.7
4,846,368 + IAI46_22760 0.37 -0.1
4,846,368 + IAI46_22760 0.37 -0.3
4,846,394 + IAI46_22760 0.48 -0.2
4,846,480 + IAI46_22760 0.83 +0.4
4,846,480 + IAI46_22760 0.83 +0.2
4,846,480 + IAI46_22760 0.83 +0.6
4,846,480 + IAI46_22760 0.83 -0.0
4,846,481 - IAI46_22760 0.84 -0.8
4,846,490 + IAI46_22760 0.87 +0.4
4,846,491 - IAI46_22760 0.88 -1.5
4,846,543 + +0.3
4,846,573 + -0.6
4,846,574 - +0.3
4,846,579 + +1.1
4,846,579 + -0.8
4,846,580 - -0.5
4,846,615 + +0.9
4,846,675 + IAI46_22765 0.11 +0.1
4,846,675 + IAI46_22765 0.11 -0.4
4,846,675 + IAI46_22765 0.11 +0.7
4,846,675 + IAI46_22765 0.11 +0.2
4,846,675 + IAI46_22765 0.11 +0.4
4,846,675 + IAI46_22765 0.11 -0.5
4,846,675 + IAI46_22765 0.11 +0.4
4,846,676 - IAI46_22765 0.11 -0.4
4,846,676 - IAI46_22765 0.11 +1.6
4,846,676 - IAI46_22765 0.11 +0.3
4,846,676 - IAI46_22765 0.11 -0.2
4,846,676 - IAI46_22765 0.11 -0.3
4,846,676 - IAI46_22765 0.11 +0.8
4,846,676 - IAI46_22765 0.11 -0.2
4,846,676 - IAI46_22765 0.11 +0.1
4,846,676 - IAI46_22765 0.11 +0.6
4,846,676 - IAI46_22765 0.11 +0.3
4,846,676 - IAI46_22765 0.11 -0.6
4,846,676 - IAI46_22765 0.11 +0.6
4,846,676 - IAI46_22765 0.11 +0.4
4,846,676 - IAI46_22765 0.11 +0.4
4,846,677 + IAI46_22765 0.12 +0.1
4,846,677 + IAI46_22765 0.12 +0.2
4,846,677 + IAI46_22765 0.12 -0.5
4,846,677 + IAI46_22765 0.12 -0.3
4,846,677 + IAI46_22765 0.12 -0.5
4,846,678 - IAI46_22765 0.12 +0.6
4,846,678 - IAI46_22765 0.12 +0.9
4,846,678 - IAI46_22765 0.12 +0.6
4,846,719 + IAI46_22765 0.14 +0.4
4,846,719 + IAI46_22765 0.14 +0.2
4,846,720 - IAI46_22765 0.15 -0.0
4,846,720 - IAI46_22765 0.15 +1.7
4,846,720 - IAI46_22765 0.15 +0.4
4,846,723 + IAI46_22765 0.15 +0.8
4,846,724 - IAI46_22765 0.15 +0.2
4,846,845 + IAI46_22765 0.23 -0.6
4,846,845 + IAI46_22765 0.23 +0.8
4,846,846 - IAI46_22765 0.23 +0.6
4,846,846 - IAI46_22765 0.23 +0.6
4,846,853 - IAI46_22765 0.24 -0.8
4,846,938 + IAI46_22765 0.30 +0.2
4,846,982 - IAI46_22765 0.33 +1.2
4,847,023 + IAI46_22765 0.35 -0.5
4,847,024 - IAI46_22765 0.36 +0.7
4,847,024 - IAI46_22765 0.36 +0.2
4,847,154 + IAI46_22765 0.45 +0.5
4,847,184 - IAI46_22765 0.47 +1.1
4,847,296 + IAI46_22765 0.54 +0.9
4,847,464 + IAI46_22765 0.66 -0.8
4,847,564 - IAI46_22765 0.73 -0.5
4,847,574 - IAI46_22765 0.74 +0.2
4,847,726 + IAI46_22765 0.84 +0.2
4,847,727 - IAI46_22765 0.84 -0.2
4,847,787 + IAI46_22765 0.88 +0.5
4,847,787 + IAI46_22765 0.88 -0.4
4,847,788 - IAI46_22765 0.88 -0.8
4,847,788 - IAI46_22765 0.88 +0.0
4,847,788 - IAI46_22765 0.88 +0.4
4,847,810 + IAI46_22765 0.90 +1.3
4,847,811 - +0.8
4,847,815 + -0.1
4,847,815 + -0.9
4,847,815 + -0.1
4,847,815 + -0.4
4,847,815 + -0.1
4,847,816 - +0.8
4,847,816 - +0.1
4,847,816 - +1.1
4,847,816 - +0.5
4,847,816 - -0.4
4,847,816 - -1.0
4,847,816 - +0.3
4,847,817 + -0.2
4,847,817 + +0.1
4,847,817 + +1.6
4,847,817 + +0.2
4,847,818 - +0.4
4,847,818 - +0.7
4,847,818 - -0.2
4,847,846 + +1.8
4,847,862 + +0.5
4,847,863 - +0.8
4,847,883 + -0.0
4,847,884 - -0.1
4,847,899 + -0.0
4,847,899 + +0.6
4,847,899 + -0.5
4,847,900 - +0.9
4,847,902 - +0.5
4,847,953 + +0.2
4,847,953 + -0.6
4,847,966 + +0.4
4,847,966 + +0.0
4,848,144 + IAI46_22770 0.20 +1.0
4,848,144 + IAI46_22770 0.20 +0.1
4,848,144 + IAI46_22770 0.20 -0.3
4,848,144 + IAI46_22770 0.20 +0.3
4,848,144 + IAI46_22770 0.20 +0.6
4,848,144 + IAI46_22770 0.20 +0.7
4,848,145 - IAI46_22770 0.20 -0.3
4,848,145 - IAI46_22770 0.20 -0.5
4,848,145 - IAI46_22770 0.20 -0.3
4,848,452 + IAI46_22770 0.55 +0.0
4,848,720 + IAI46_22770 0.85 +0.3
4,848,774 + -0.2
4,848,775 - -0.5
4,848,775 - +0.4
4,848,846 + +0.8
4,848,847 - -0.1
4,848,847 - -0.8
4,848,867 - -0.5

Or see this region's nucleotide sequence